BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0560.0022.p
         (195 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K601.1 B3K601_9BACI Putative uncharacterized protein                228   2e-58
B1HMS9.1 B1HMS9_LYSSC Putative uncharacterized protein                 64   8e-09
C0ZI66.1 C0ZI66_BREBN Putative uncharacterized protein                 59   3e-07

>B3K601.1 B3K601_9BACI Putative uncharacterized protein
          Length = 397

 Score =  228 bits (581), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 139/196 (70%), Gaps = 20/196 (10%)

Query: 1   MTHGLNLPDKFELTIQTKVTNVEEPFEFKVPVKVDNNALVLKPD-VTKSDGQFSYTVKEL 59
           +  GL LPD+FELTIQ  VT V E FEFK+PV V N ++V+KPD  TKSDG FSYTVK+L
Sbjct: 221 LAKGLKLPDQFELTIQANVTQVNETFEFKIPVNVANPSIVVKPDQATKSDGPFSYTVKQL 280

Query: 60  YLSPVSTRLVVDSQGPVPQSPEQTGDYSASKVYYEIVDDQGNELDQRMLGFFNGKPATEY 119
            +SPVSTRLV+DS+G VP S EQTGDYSAS VYYE+VDDQGN L  R   +F+ +P TEY
Sbjct: 281 DISPVSTRLVLDSKGEVPASVEQTGDYSASMVYYELVDDQGNVLSPRKFEYFHSEPQTEY 340

Query: 120 HIDDLYSPFAGKPKSITIKPFTFTVKNADWSIVGEKKDSKGNYVTGKDRLGNDSWKDSMG 179
           HID LYSP  G PKSITIKPFT TV   DWS++G+                    +DS+G
Sbjct: 341 HIDQLYSPLNGTPKSITIKPFTLTVNPKDWSVIGQD-------------------QDSVG 381

Query: 180 TRTYLKDLEVTIPVNP 195
            +TYLKDLE+TIPV P
Sbjct: 382 DKTYLKDLEMTIPVKP 397


>B1HMS9.1 B1HMS9_LYSSC Putative uncharacterized protein
          Length = 365

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 37/192 (19%)

Query: 10  KFELTIQTKVTNVEEPFEFKVPVKVDNNALVLKPDVTKSDGQFSYTVKELYLSPVSTRLV 69
           KF LT+ T +T + EPF+  +PV+   N + L+P++++      +T++++ L+P++T + 
Sbjct: 201 KFNLTLSTTITGISEPFKMDIPVRDIGNYINLQPNISRKYKNNQFTIEQIILTPITTSIT 260

Query: 70  VDSQGPVPQSPEQTGDYSASKVYYEIVDDQGNELDQRMLGFFNG-------KPATEYHID 122
                 +    + T       +  E+ D+QG EL        NG       K  +++ +D
Sbjct: 261 TR----IALLDKSTSVDFREGIRIEVYDEQGRELK-----LINGNGGRETNKGNSDFIMD 311

Query: 123 DLYSPFAGKPKSITIKPFTFTVKNADWSIVGEKKDSKGNYVTGKDRLGNDSWKDSMGTRT 182
               PF   PK+ITIKP+                D +G+Y    D  G+   +       
Sbjct: 312 LRVHPFETLPKAITIKPYIHLY------------DFEGSYQL--DENGDPKIQ------- 350

Query: 183 YLKDLEVTIPVN 194
           Y+ +LE+TIP+N
Sbjct: 351 YIPELEITIPIN 362


>C0ZI66.1 C0ZI66_BREBN Putative uncharacterized protein
          Length = 368

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 7   LPDKFELTIQTKVTNVEEPFEFKVPV-KVDNNALVLKPDVTKSDGQFSYTVKELYLSPVS 65
           +PD F   +  K+  +++ F+  +P  K  NN + LKP+  +S+   S+ V E+ ++PV+
Sbjct: 214 IPDSFHAEVVVKLAGIDQAFKLDIPFQKATNNTIQLKPNAIQSNDGISFEVSEVNVTPVT 273

Query: 66  TRLVVDSQGPVPQSPEQTGDYSASKVYYEIVDDQGNELDQRMLGFFNGKPATEYHIDDLY 125
           TRL+         S +  G  S   +   + DDQG +L   + G    K  T    D  Y
Sbjct: 274 TRLLY--------SVKLDGATSDKSIRAALFDDQGRQLTS-LHGEGERKDNT-LTFDARY 323

Query: 126 SPFAGKPKSITIKPF 140
           +   G+PK   IKPF
Sbjct: 324 ASAQGQPKYFIIKPF 338


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,290,897,681
Number of extensions: 57312268
Number of successful extensions: 87088
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 87085
Number of HSP's successfully gapped: 3
Length of query: 195
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 67
Effective length of database: 1,854,806,283
Effective search space: 124272020961
Effective search space used: 124272020961
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 127 (53.5 bits)