BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0560.0021.p
         (210 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K601.1 B3K601_9BACI Putative uncharacterized protein                192   1e-47
B1HMS9.1 B1HMS9_LYSSC Putative uncharacterized protein                 65   5e-09
C0ZI66.1 C0ZI66_BREBN Putative uncharacterized protein                 65   5e-09
Q2BC58.1 Q2BC58_9BACI Putative uncharacterized protein                 57   7e-07

>B3K601.1 B3K601_9BACI Putative uncharacterized protein
          Length = 397

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/186 (54%), Positives = 129/186 (69%), Gaps = 16/186 (8%)

Query: 1   MDAIERMIRESSLPRQSMSNQIIHRIGENQVSRRSGKAKSSVLKRSVVAASVTAILGAGV 60
           M+A+E+ IRESSLP +SMS+QI++RIGE +++R S K K +V+KR+++ AS  A+LG  V
Sbjct: 13  MNALEQRIRESSLPMRSMSDQIMNRIGEREMTRLSTKPKPNVIKRAILVASAAAVLGGTV 72

Query: 61  IGAGFVSPVMADALKKIPGFGVIYNGTSAEAVNAAVEQGIVSEPGLSVTHDGITLKLADL 120
           IG+GFVSPVMA  LK+IP  GV+Y GTS +AV AA+EQGI+SEP LS+THDG+TLK+ADL
Sbjct: 73  IGSGFVSPVMAATLKQIPVLGVLYEGTSEDAVKAAIEQGILSEPNLSLTHDGVTLKVADL 132

Query: 121 LYDGTRLSFTLIREGTDLENMVIPF----------------KLKDTPKEQLPKGYIVGPE 164
           LYDGTRLSF L REG DL     P+                K +   KE   KGYI  P 
Sbjct: 133 LYDGTRLSFILEREGVDLPGTASPYISEDATLIGNQDSEYVKSRKVAKEDQEKGYIEMPR 192

Query: 165 LQSAGQ 170
           +   GQ
Sbjct: 193 ILVDGQ 198


>B1HMS9.1 B1HMS9_LYSSC Putative uncharacterized protein
          Length = 365

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 62/101 (61%)

Query: 28  ENQVSRRSGKAKSSVLKRSVVAASVTAILGAGVIGAGFVSPVMADALKKIPGFGVIYNGT 87
           E ++ ++  K K S +K  +   +  A++ + +I  G +SP MA A+K++P    ++  T
Sbjct: 31  EKRILKKISKEKPSHVKIYLGVTASVAMIFSLIIVTGLISPTMAAAMKEVPLLSSVFKFT 90

Query: 88  SAEAVNAAVEQGIVSEPGLSVTHDGITLKLADLLYDGTRLS 128
               ++AA E+G+ ++   SVTH+G TL + +++YDGTR++
Sbjct: 91  RDLGLHAADEKGLSTKLNTSVTHEGFTLNVTEVVYDGTRVA 131


>C0ZI66.1 C0ZI66_BREBN Putative uncharacterized protein
          Length = 368

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 43  LKRSVVAASVTAILGAGVIGAGFVSPVMADALKKIPGFGVIYNGTSAE-AVNAAVEQGIV 101
           L+++   A+   ILGA V  +GF+SPVMA ++K+IP  G +++   A+  + AA EQG+ 
Sbjct: 48  LRKAPYVAAAAVILGATVFTSGFISPVMAQSIKQIPLVGSLFSFIEADLGLRAAGEQGLS 107

Query: 102 SEPGLSVTHDGITLKLADLLYDGTRLSFTL 131
           S+   S++H  + L++ + ++DGTR  + L
Sbjct: 108 SKVNRSISHHDMKLEVTETVFDGTRAVYLL 137


>Q2BC58.1 Q2BC58_9BACI Putative uncharacterized protein
          Length = 436

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%)

Query: 34  RSGKAKSSVLKRSVVAASVTAILGAGVIGAGFVSPVMADALKKIPGFGVIYNGTSAEAVN 93
           R  + K ++ +++    S  A   A  IG+   SP +A    +IP  G  ++G+  E + 
Sbjct: 31  RETRIKGTLRRKAFYTTSAAAAGFALFIGSAIYSPAIAKIASEIPVVGTFFSGSGDEGLE 90

Query: 94  AAVEQGIVSEPGLSVTHDGITLKLADLLYDGTRLSFTLIRE 134
            A  +G+    G S T  GITL + ++ YDGTRL+F    E
Sbjct: 91  IAGAKGLTQVVGKSATDKGITLTINEVFYDGTRLAFGFTHE 131


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,084,248,306
Number of extensions: 42988130
Number of successful extensions: 104392
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 104402
Number of HSP's successfully gapped: 4
Length of query: 210
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 80
Effective length of database: 1,835,964,253
Effective search space: 146877140240
Effective search space used: 146877140240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)