BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0019.p (612 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7Q0.1 B3K7Q0_9BACI Putative uncharacterized protein 957 0.0 C2W6S3.1 C2W6S3_BACCE Amino acid permease 937 0.0 C2Y9A1.1 C2Y9A1_BACCE Amino acid permease 908 0.0 C3B294.1 C3B294_BACMY Amino acid permease 907 0.0 C3BJ52.1 C3BJ52_9BACI Amino acid permease 906 0.0 >B3K7Q0.1 B3K7Q0_9BACI Putative uncharacterized protein Length = 608 Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/610 (77%), Positives = 522/610 (85%), Gaps = 3/610 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M+SS+KRFLIGRPLKS +LG+QKLNKTK YGPEQIL+VL+T+ AAA+ Sbjct: 1 MLSSIKRFLIGRPLKSTELGEQKLNKTKALAILSSDALSSVAYGPEQILIVLMTVGAAAY 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYSIP SYRQIIF+YPHGGGAYVVSK NLG YPGLVAGGSLLVDYIL Sbjct: 61 WYSIPIAVGVLVLLLALILSYRQIIFSYPHGGGAYVVSKRNLGMYPGLVAGGSLLVDYIL 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TV+VSVSAGTDAITSAFP LH YN+ I+I FVL +T LNLRGVTESAS LAYPVYLFVLA Sbjct: 121 TVSVSVSAGTDAITSAFPELHAYNLPISIVFVLCLTVLNLRGVTESASILAYPVYLFVLA 180 Query: 184 LFILIGLGVFRILTGSVPAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAIPN 243 LFILIG+G+F I TG ELHTPIGTP+AG+SLFLLL+AF+SGSSALTGVEAISNAIPN Sbjct: 181 LFILIGVGIFNIATGHASPELHTPIGTPVAGLSLFLLLRAFASGSSALTGVEAISNAIPN 240 Query: 244 FKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFMYY 303 FK+PAPNNAAKTL AMG+LLA+LF+GIVFLAYYYG++P E TVVS IAE FGRN +YY Sbjct: 241 FKDPAPNNAAKTLVAMGSLLALLFSGIVFLAYYYGVSPSEQVTVVSQIAEHTFGRNALYY 300 Query: 304 FVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXXXX 363 F+QGTTALIL+LAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSN Sbjct: 301 FIQGTTALILILAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNGIIILGFFSIL 360 Query: 364 XXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISFIV 423 AFEG+TEHLIPLYAVGVFIPFTLSQ+GMM+KWIR+KP GW+ K IINTTGA ISFIV Sbjct: 361 LLLAFEGKTEHLIPLYAVGVFIPFTLSQTGMMVKWIREKPEGWIVKLIINTTGACISFIV 420 Query: 424 TMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEE-EPLAIEGNIIIL 482 TM+FF TKF QVW VL+FLPLII +F RIRKHYEAVADQLRI+TCE +P IEGN+IIL Sbjct: 421 TMIFFFTKFAQVWTVLIFLPLIIWIFTRIRKHYEAVADQLRITTCEPVKP--IEGNVIIL 478 Query: 483 PVAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPYR 542 PVAGITHVVENSL YAKSLGA QIIAV+VPFERE++ F+EKWK + P++RLVTL+SPYR Sbjct: 479 PVAGITHVVENSLNYAKSLGAGQIIAVYVPFEREEEVAFQEKWKKWQPDIRLVTLHSPYR 538 Query: 543 SIIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNVI 602 SII PLTKFIDTVQRKASES+YQVTVV+PQFIP+KGWHN LHNQSSLL+RAHLLYRR+VI Sbjct: 539 SIIQPLTKFIDTVQRKASESDYQVTVVIPQFIPKKGWHNFLHNQSSLLIRAHLLYRRDVI 598 Query: 603 ITTVPYHLKK 612 ITTVPYHLKK Sbjct: 599 ITTVPYHLKK 608 >C2W6S3.1 C2W6S3_BACCE Amino acid permease Length = 608 Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/610 (75%), Positives = 517/610 (84%), Gaps = 3/610 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M+SS+KRFLIGRPLKS +LG+QKLNKTK YGPEQIL+ L +L A AF Sbjct: 1 MVSSIKRFLIGRPLKSTELGEQKLNKTKALAILSSDALSSVAYGPEQILIALASLGAIAF 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYSIP SYRQIIFAYPHGGGAYVVSKENLG PGL+AGGSLLVDYIL Sbjct: 61 WYSIPIAIGVLVLLTALILSYRQIIFAYPHGGGAYVVSKENLGVNPGLIAGGSLLVDYIL 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TVAVSVSAGTDAITSAFPSLH +NV+IAI FVL+IT LNLRGVTESAS LAYPVYLFVLA Sbjct: 121 TVAVSVSAGTDAITSAFPSLHEHNVIIAIIFVLLITILNLRGVTESASVLAYPVYLFVLA 180 Query: 184 LFILIGLGVFRILTGSVPAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAIPN 243 LFILIG+G++ I+TG V LHTPIGTP+AGISLFLLLKAF+SGSSALTGVEAISNAIPN Sbjct: 181 LFILIGVGIYNIVTGHVSPNLHTPIGTPVAGISLFLLLKAFASGSSALTGVEAISNAIPN 240 Query: 244 FKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFMYY 303 FK+PAP NAAKTL AMG+LLAVLF+GIV+LAYYYGITP ++ TVVS IAE+ FGRNFMY+ Sbjct: 241 FKDPAPKNAAKTLLAMGSLLAVLFSGIVYLAYYYGITPSKEVTVVSQIAEETFGRNFMYF 300 Query: 304 FVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXXXX 363 F+QGTTALIL+LAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSN Sbjct: 301 FIQGTTALILILAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNGIIILGIASIL 360 Query: 364 XXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISFIV 423 AF+G+TEHLIPLYAVGVFIPFTLSQSGM++KWIR+KP GW+ K IN GA+ISFIV Sbjct: 361 LIIAFQGQTEHLIPLYAVGVFIPFTLSQSGMVVKWIREKPQGWILKLTINLAGAIISFIV 420 Query: 424 TMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEEEPLA-IEGNIIIL 482 MFFLTKF QVW VL+FLP+II++F+RIRKHYEAV DQL + TC EP+ IEGN+II+ Sbjct: 421 MSMFFLTKFAQVWTVLIFLPVIIIVFHRIRKHYEAVGDQLSLKTC--EPIVPIEGNVIIV 478 Query: 483 PVAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPYR 542 PVAG+THVVENSL YAKSL +QIIAV+V FERED+ +FEEKWK + P VRLVTL+S YR Sbjct: 479 PVAGMTHVVENSLNYAKSLSPDQIIAVYVSFEREDEKMFEEKWKKWQPGVRLVTLHSHYR 538 Query: 543 SIIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNVI 602 SII PLTKFIDTVQ KASESNY+VTVV+PQFIP+KGWHNILHNQSSLL+RA LLY+RNV+ Sbjct: 539 SIIQPLTKFIDTVQYKASESNYRVTVVIPQFIPKKGWHNILHNQSSLLIRAFLLYKRNVV 598 Query: 603 ITTVPYHLKK 612 ITTVPYHLKK Sbjct: 599 ITTVPYHLKK 608 >C2Y9A1.1 C2Y9A1_BACCE Amino acid permease Length = 608 Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/610 (74%), Positives = 516/610 (84%), Gaps = 3/610 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M+SS+KRFLIGRPLKS +LG+QKLNKTK YGPEQIL+ L + A A+ Sbjct: 1 MVSSIKRFLIGRPLKSTELGEQKLNKTKALAILSSDALSSVAYGPEQILIALAGVGAIAY 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYSIP SYRQIIFAYPHGGGAYVVSKENLG PGL+AGGSLLVDYIL Sbjct: 61 WYSIPIAVGVLVLLTALILSYRQIIFAYPHGGGAYVVSKENLGMNPGLIAGGSLLVDYIL 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TVAVSVSAGTDAITSAFPSLH +NV+IA+ FV++IT LNLRGVTESAS LAYPVYLFVLA Sbjct: 121 TVAVSVSAGTDAITSAFPSLHAHNVIIAVIFVILITILNLRGVTESASVLAYPVYLFVLA 180 Query: 184 LFILIGLGVFRILTGSVPAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAIPN 243 LFILIG+G++ ILTG V LHTPIGTP+AGISLFLLL+AF+SGSSALTGVEAISNAIPN Sbjct: 181 LFILIGVGIYNILTGHVSPTLHTPIGTPVAGISLFLLLRAFASGSSALTGVEAISNAIPN 240 Query: 244 FKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFMYY 303 FK+PAPNNAAKTL AMG LLAVLF+GIVFLAYYYG+TP ++ TVVS IAEQ FGRNFMYY Sbjct: 241 FKDPAPNNAAKTLLAMGALLAVLFSGIVFLAYYYGVTPSKEVTVVSQIAEQTFGRNFMYY 300 Query: 304 FVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXXXX 363 F+QGTTALIL+LAANTGYSAFPLLAVNLAKDKFIPRMFT+RGDRLGYSN Sbjct: 301 FIQGTTALILILAANTGYSAFPLLAVNLAKDKFIPRMFTIRGDRLGYSNGIIILGVASII 360 Query: 364 XXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISFIV 423 AF+G+TEHLIPLYAVGVFIPFTLSQ+GM++KW+R+KP GWV K +N GA+ISFIV Sbjct: 361 LIVAFQGQTEHLIPLYAVGVFIPFTLSQTGMVLKWLREKPEGWVLKLTVNLIGAVISFIV 420 Query: 424 TMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEEEPL-AIEGNIIIL 482 MFFLTKF QVW +L+FLP II +F+RI+KHY+AV DQL + TC EPL IEGN+I++ Sbjct: 421 MSMFFLTKFAQVWSILIFLPAIIFLFHRIKKHYDAVGDQLSLKTC--EPLIPIEGNVIVV 478 Query: 483 PVAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPYR 542 PVAG+THVVENSL YAKSL A+Q+IAV+V F+RE++ FEEKWK + PEVRLVTL+S YR Sbjct: 479 PVAGMTHVVENSLNYAKSLSADQVIAVYVAFDREEEKKFEEKWKVWQPEVRLVTLHSHYR 538 Query: 543 SIIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNVI 602 SII PLTKFIDTVQ KASESNY+VTVV+PQFIP+KGWHNILHNQSSLL+RA+LLY+RNV+ Sbjct: 539 SIIQPLTKFIDTVQYKASESNYRVTVVIPQFIPKKGWHNILHNQSSLLIRAYLLYKRNVV 598 Query: 603 ITTVPYHLKK 612 ITTVPYHLKK Sbjct: 599 ITTVPYHLKK 608 >C3B294.1 C3B294_BACMY Amino acid permease Length = 608 Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/610 (75%), Positives = 517/610 (84%), Gaps = 3/610 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M+S++KRFLIGRPLKS +LG+QKLNKTK YGPEQIL+ L T+ A AF Sbjct: 1 MVSTIKRFLIGRPLKSTELGEQKLNKTKALAILSSDALSSVAYGPEQILIALSTVGALAF 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYSIP SYRQIIFAYPHGGGAYVVSKENLG PGL+AGGSLLVDYIL Sbjct: 61 WYSIPIAIGVLVLLTALILSYRQIIFAYPHGGGAYVVSKENLGVNPGLIAGGSLLVDYIL 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TVAVSVSAGTDAITSAFPSLH +NV+IAI FVL IT LNLRGVTESAS LAYPVYLFVLA Sbjct: 121 TVAVSVSAGTDAITSAFPSLHAHNVIIAIIFVLFITILNLRGVTESASILAYPVYLFVLA 180 Query: 184 LFILIGLGVFRILTGSVPAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAIPN 243 LFILIG+G++ I+TG V LHTPIGTP+AGISLFLLLKAF+SGSSALTGVEAISNAIPN Sbjct: 181 LFILIGVGIYNIVTGEVSPNLHTPIGTPVAGISLFLLLKAFASGSSALTGVEAISNAIPN 240 Query: 244 FKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFMYY 303 FK+PAP NAAKTL AMG+LLAVLF+GIV+LAYYYGITP + TVVS IAE+ FGRNFMY+ Sbjct: 241 FKDPAPKNAAKTLLAMGSLLAVLFSGIVYLAYYYGITPSGEVTVVSQIAEETFGRNFMYF 300 Query: 304 FVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXXXX 363 F+QGTTALIL+LAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSN Sbjct: 301 FIQGTTALILILAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNGIIILGIASIL 360 Query: 364 XXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISFIV 423 AF+G+TEHLIPLYAVGVFIPFTLSQSGM++KWIR+KP GW+ K IN TGA+ISFIV Sbjct: 361 LIIAFQGQTEHLIPLYAVGVFIPFTLSQSGMVVKWIREKPQGWILKLTINLTGAIISFIV 420 Query: 424 TMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEEEPLA-IEGNIIIL 482 MFFLTKF+QVW VL+FLP+II++F+RIRKHYEAV DQL + TC EP+ IEGN+II+ Sbjct: 421 MSMFFLTKFSQVWTVLIFLPVIIIVFHRIRKHYEAVGDQLSLKTC--EPIVPIEGNVIIV 478 Query: 483 PVAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPYR 542 PVAG+THVVENSL YAKSL +Q+IAV+V FERED+ FEEKWK + PEVRLVTL+S YR Sbjct: 479 PVAGMTHVVENSLNYAKSLSPDQVIAVYVSFEREDEKKFEEKWKKWQPEVRLVTLHSHYR 538 Query: 543 SIIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNVI 602 SII PLTKFIDTVQ KASESNY+VTVV+PQFIP+KGWHNILHNQSSLL+RA LLY+RNV+ Sbjct: 539 SIIQPLTKFIDTVQYKASESNYRVTVVIPQFIPKKGWHNILHNQSSLLIRAFLLYKRNVV 598 Query: 603 ITTVPYHLKK 612 ITTVPYHLKK Sbjct: 599 ITTVPYHLKK 608 >C3BJ52.1 C3BJ52_9BACI Amino acid permease Length = 608 Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/610 (75%), Positives = 517/610 (84%), Gaps = 3/610 (0%) Query: 4 MMSSVKRFLIGRPLKSEQLGDQKLNKTKXXXXXXXXXXXXXXYGPEQILLVLVTLSAAAF 63 M+S++KRFLIGRPLKS +LG+QKLNKTK YGPEQIL+ L T+ A AF Sbjct: 1 MVSTIKRFLIGRPLKSTELGEQKLNKTKALAILSSDALSSVAYGPEQILIALSTVGALAF 60 Query: 64 WYSIPXXXXXXXXXXXXXXSYRQIIFAYPHGGGAYVVSKENLGKYPGLVAGGSLLVDYIL 123 WYSIP SYRQIIFAYPHGGGAYVVSKENLG PGL+AGGSLLVDYIL Sbjct: 61 WYSIPIAIGVLVLLTALILSYRQIIFAYPHGGGAYVVSKENLGVNPGLIAGGSLLVDYIL 120 Query: 124 TVAVSVSAGTDAITSAFPSLHPYNVLIAIFFVLIITTLNLRGVTESASFLAYPVYLFVLA 183 TVAVSVSAGTDAITSAFPSLH +NV+IAI FVL IT LNLRGVTESAS LAYPVYLFVLA Sbjct: 121 TVAVSVSAGTDAITSAFPSLHAHNVIIAIIFVLFITILNLRGVTESASILAYPVYLFVLA 180 Query: 184 LFILIGLGVFRILTGSVPAELHTPIGTPIAGISLFLLLKAFSSGSSALTGVEAISNAIPN 243 LFILIG+G++ I+TG V LHTPIGTP+AG+SLFLLLKAF+SGSSALTGVEAISNAIPN Sbjct: 181 LFILIGVGIYNIVTGEVSPNLHTPIGTPVAGVSLFLLLKAFASGSSALTGVEAISNAIPN 240 Query: 244 FKEPAPNNAAKTLAAMGTLLAVLFTGIVFLAYYYGITPREDATVVSIIAEQVFGRNFMYY 303 FK+PAP NAAKTL AMG+LLAVLF+GIV+LAYYYGITP + TVVS IAE+ FGRNFMY+ Sbjct: 241 FKDPAPKNAAKTLLAMGSLLAVLFSGIVYLAYYYGITPSGEVTVVSQIAEETFGRNFMYF 300 Query: 304 FVQGTTALILVLAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNXXXXXXXXXXX 363 F+QGTTALIL+LAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSN Sbjct: 301 FIQGTTALILILAANTGYSAFPLLAVNLAKDKFIPRMFTVRGDRLGYSNGIIILGIASIL 360 Query: 364 XXXAFEGRTEHLIPLYAVGVFIPFTLSQSGMMIKWIRQKPPGWVTKFIINTTGALISFIV 423 AF+G+TEHLIPLYAVGVFIPFTLSQSGM++KWIR+KP GW+ K IN TGA+ISFIV Sbjct: 361 LIIAFQGQTEHLIPLYAVGVFIPFTLSQSGMVVKWIREKPQGWILKLTINLTGAIISFIV 420 Query: 424 TMMFFLTKFTQVWPVLVFLPLIILMFYRIRKHYEAVADQLRISTCEEEPLA-IEGNIIIL 482 MFFLTKF+QVW VL+FLP+II++F+RIRKHYEAV DQL + TC EP+ IEGN+II+ Sbjct: 421 MSMFFLTKFSQVWTVLIFLPVIIIVFHRIRKHYEAVGDQLSLKTC--EPIVPIEGNVIIV 478 Query: 483 PVAGITHVVENSLRYAKSLGAEQIIAVHVPFEREDDAIFEEKWKNFHPEVRLVTLYSPYR 542 PVAG+THVVENSL YAKSL +Q+IAV+V FERED+ FEEKWK + PEVRLVTL+S YR Sbjct: 479 PVAGMTHVVENSLNYAKSLSPDQVIAVYVSFEREDEKKFEEKWKKWQPEVRLVTLHSHYR 538 Query: 543 SIIHPLTKFIDTVQRKASESNYQVTVVVPQFIPRKGWHNILHNQSSLLLRAHLLYRRNVI 602 SII PLTKFIDTVQ KASESNY+VTVV+PQFIP+KGWHNILHNQSSLL+RA LLY+RNV+ Sbjct: 539 SIIQPLTKFIDTVQYKASESNYRVTVVIPQFIPKKGWHNILHNQSSLLIRAFLLYKRNVV 598 Query: 603 ITTVPYHLKK 612 ITTVPYHLKK Sbjct: 599 ITTVPYHLKK 608 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,205,527,438 Number of extensions: 125430053 Number of successful extensions: 486349 Number of sequences better than 1.0e-05: 643 Number of HSP's gapped: 485163 Number of HSP's successfully gapped: 645 Length of query: 612 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 470 Effective length of database: 1,722,912,073 Effective search space: 809768674310 Effective search space used: 809768674310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 134 (56.2 bits)