BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0016.p (328 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9DWT5.1 B9DWT5_CLOK1 Putative uncharacterized protein 298 7e-79 A5N338.1 A5N338_CLOK5 Predicted sensory transduction histidine k... 298 7e-79 Q24R74.1 Q24R74_DESHY Putative uncharacterized protein 291 7e-77 Q97M28.1 Q97M28_CLOAB Sensor protein EC=2.7.13.3 221 1e-55 C2YAZ4.1 C2YAZ4_BACCE Putative uncharacterized protein 207 2e-51 >B9DWT5.1 B9DWT5_CLOK1 Putative uncharacterized protein Length = 336 Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 142/328 (43%), Positives = 220/328 (67%), Gaps = 1/328 (0%) Query: 1 MSLIRRIAELLHVQKGMLLVYVLNTVILVMASYVFYGVNDILYPLFVSFFILLVYLAVTA 60 M LIR + + + ++ ++ Y+ NT I+++ + + I YP +S IL+VYL V A Sbjct: 1 MYLIRLLCKTIDSERKAIVFYLANTAIMLLIFNLTFTQTVIAYPTLISLTILIVYLIVKA 60 Query: 61 VKLNQFTGKLSAAKSSPHIEVDDTNVKDKLIFGAINEIHEQYNGRLHQMNSSIKERNTLF 120 V ++ F L +AK S + + K+ +F I EIH+ YNG++ MN + RN++F Sbjct: 61 VSMHGFLTSLDSAKHSKGYKSNPETCKETYVFEIIEEIHKNYNGKITTMNDKLAGRNSMF 120 Query: 121 SQWIHNMKVSISIIGLAAEKGTEEAISDIKEENRRLTQNLEECLNLLRLDDFARDYLPEK 180 S +IHNMK S+++I LA + +A+ DI EN +L +NLE+ LN+LRLD+F+ DY+PE+ Sbjct: 121 SSFIHNMKSSLAVIELACANPSSDALGDISLENEKLKRNLEQALNILRLDEFSNDYVPER 180 Query: 181 VNLHKVVNKAVNARKREFIYKGVYPQIDIAKHLEICTDEKWCGYMLEQVLSNAVKYSDKE 240 V+LH +VN +N +KR+FIY GV+P++ + + TD+KWC Y+LEQ++SNA+KYS Sbjct: 181 VDLHGLVNMVINEKKRDFIYAGVFPKL-YGEATYVYTDKKWCAYILEQIISNAIKYSTSG 239 Query: 241 GRVTVRSELAGDRVLLSIQDYGVGIDQEDLPRVFDPFFTGKNGRDYRSATGIGLYMVKHI 300 + + +L+I+D G+GI+ ED+PRVFD FFTGKNGR++++ATGIGL+MVKHI Sbjct: 240 KNIYMEINPGEKHTVLTIRDEGIGIEAEDVPRVFDLFFTGKNGRNHKAATGIGLFMVKHI 299 Query: 301 ARKLGHRVSIDSQKGAGTRVTFAFLSKV 328 A++L +V++ S G GT V +FLSK+ Sbjct: 300 AKQLDIQVTLTSAVGEGTSVRLSFLSKL 327 >A5N338.1 A5N338_CLOK5 Predicted sensory transduction histidine kinase EC=2.7.3.- Length = 336 Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 142/328 (43%), Positives = 220/328 (67%), Gaps = 1/328 (0%) Query: 1 MSLIRRIAELLHVQKGMLLVYVLNTVILVMASYVFYGVNDILYPLFVSFFILLVYLAVTA 60 M LIR + + + ++ ++ Y+ NT I+++ + + I YP +S IL+VYL V A Sbjct: 1 MYLIRLLCKTIDSERKAIVFYLANTAIMLLIFNLTFTQTVIAYPTLISLTILIVYLIVKA 60 Query: 61 VKLNQFTGKLSAAKSSPHIEVDDTNVKDKLIFGAINEIHEQYNGRLHQMNSSIKERNTLF 120 V ++ F L +AK S + + K+ +F I EIH+ YNG++ MN + RN++F Sbjct: 61 VSMHGFLTSLDSAKHSKGYKSNPETCKETYVFEIIEEIHKNYNGKITTMNDKLAGRNSMF 120 Query: 121 SQWIHNMKVSISIIGLAAEKGTEEAISDIKEENRRLTQNLEECLNLLRLDDFARDYLPEK 180 S +IHNMK S+++I LA + +A+ DI EN +L +NLE+ LN+LRLD+F+ DY+PE+ Sbjct: 121 SSFIHNMKSSLAVIELACANPSSDALGDISLENEKLKRNLEQALNILRLDEFSNDYVPER 180 Query: 181 VNLHKVVNKAVNARKREFIYKGVYPQIDIAKHLEICTDEKWCGYMLEQVLSNAVKYSDKE 240 V+LH +VN +N +KR+FIY GV+P++ + + TD+KWC Y+LEQ++SNA+KYS Sbjct: 181 VDLHGLVNMVINEKKRDFIYAGVFPKL-YGEATYVYTDKKWCAYILEQIISNAIKYSTSG 239 Query: 241 GRVTVRSELAGDRVLLSIQDYGVGIDQEDLPRVFDPFFTGKNGRDYRSATGIGLYMVKHI 300 + + +L+I+D G+GI+ ED+PRVFD FFTGKNGR++++ATGIGL+MVKHI Sbjct: 240 KNIYMEINPGEKHTVLTIRDEGIGIEAEDVPRVFDLFFTGKNGRNHKAATGIGLFMVKHI 299 Query: 301 ARKLGHRVSIDSQKGAGTRVTFAFLSKV 328 A++L +V++ S G GT V +FLSK+ Sbjct: 300 AKQLDIQVTLTSAVGEGTSVRLSFLSKL 327 >Q24R74.1 Q24R74_DESHY Putative uncharacterized protein Length = 328 Score = 291 bits (744), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 143/329 (43%), Positives = 218/329 (66%), Gaps = 2/329 (0%) Query: 1 MSLIRRIAELLHVQKGMLLVYVLNT-VILVMASYVFYGVNDILYPLFVSFFILLVYLAVT 59 M LIR I + + ++ ++VY++NT V+L++ + + I+YP +S IL VYL V Sbjct: 1 MYLIRLICQTIDSERKTVIVYLVNTAVLLLLFNLRVTDSSMIVYPTLLSLTILAVYLIVK 60 Query: 60 AVKLNQFTGKLSAAKSSPHIEVDDTNVKDKLIFGAINEIHEQYNGRLHQMNSSIKERNTL 119 AV ++ F L +A+ S E+ K+ L+F AI ++H Y ++ MN + RN++ Sbjct: 61 AVMMHSFLSALDSAQHSQGHELYPETGKEALVFAAIEDVHAHYQDQMIAMNEKLAGRNSM 120 Query: 120 FSQWIHNMKVSISIIGLAAEKGTEEAISDIKEENRRLTQNLEECLNLLRLDDFARDYLPE 179 FS +IHNMK S+ +I LA + EA+ DI EN +L +NLE+ LN+LRLD+FA DY+PE Sbjct: 121 FSSFIHNMKTSVLVIELACAHPSPEALKDIALENEKLKRNLEQALNILRLDEFANDYVPE 180 Query: 180 KVNLHKVVNKAVNARKREFIYKGVYPQIDIAKHLEICTDEKWCGYMLEQVLSNAVKYSDK 239 +V+LH +V+ +N +KR+FIY GVYP++ + TD KW Y++EQ+++NA+KYS Sbjct: 181 RVDLHGLVSAVINEKKRDFIYAGVYPKLQ-GPTAYVYTDRKWGAYIIEQIIANAIKYSPA 239 Query: 240 EGRVTVRSELAGDRVLLSIQDYGVGIDQEDLPRVFDPFFTGKNGRDYRSATGIGLYMVKH 299 + + R +L+I+D G+GI ED+PRVF+ FFTGKNGR+Y++ATGIGL+MV+H Sbjct: 240 HKTIHMEVHPGKKRTVLTIRDEGIGIAAEDIPRVFELFFTGKNGREYKAATGIGLFMVRH 299 Query: 300 IARKLGHRVSIDSQKGAGTRVTFAFLSKV 328 IA +LG VS+ S G GT V+ +FL+K+ Sbjct: 300 IAGQLGVEVSLTSAVGTGTSVSLSFLAKL 328 >Q97M28.1 Q97M28_CLOAB Sensor protein EC=2.7.13.3 Length = 334 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 106/317 (33%), Positives = 197/317 (62%), Gaps = 11/317 (3%) Query: 21 YVLNTVILVMASYVFYGVNDILYPLFVSFFILLVYLAVTAVKLNQFTGKLSAAKSSPHIE 80 + L++ I++ YV + D++YP+F+ I ++++ K +F L+ + + Sbjct: 20 FFLSSGIILFYFYVSKNITDVVYPIFMVVSIYIIFIVTEWFKYYRFNANLTRGIEREYYD 79 Query: 81 VDDTNVKDKLIFGAINEIHEQYNGRLHQMNSSIKERNTLFSQWIHNMKVSISIIGLAAEK 140 ++ + ++ AI +IH+ Y ++ +++ + SQWIHNMK +S+I L ++ Sbjct: 80 LESVTPEQRMAQEAILKIHKNYAAKISEIDYKNSDIKYFISQWIHNMKTPVSVIDLIVQR 139 Query: 141 GTE----EAISDIKEENRRLTQNLEECLNLLRLDDFARDYLPEKVNLHKVVNKAVNARKR 196 E + I +I+EEN ++ +++ LN++RLD+F+RDY PE V++ ++V + +N +K Sbjct: 140 EKEKLSGDVIKNIEEENYKIKNGMDQVLNIIRLDEFSRDYEPEIVDIVELVKRTINLKKN 199 Query: 197 EFIYKGVYPQIDIAKHLE---ICTDEKWCGYMLEQVLSNAVKYSDKE--GRVTVRSELAG 251 +FIY +P+++ H++ + TD+KW ++++Q++SN++KYS KE G V + Sbjct: 200 QFIYGNAFPKVEF--HVDKALVLTDKKWSTFIIDQIISNSIKYSKKEEKGYVYFNIVQSN 257 Query: 252 DRVLLSIQDYGVGIDQEDLPRVFDPFFTGKNGRDYRSATGIGLYMVKHIARKLGHRVSID 311 ++ L I+D GVGI + DL R+F+PFFTG+NGR++ ++TGIGLY+ K IA LGH +S++ Sbjct: 258 NKTHLVIKDNGVGIPKYDLKRIFEPFFTGENGRNFENSTGIGLYICKKIADNLGHEISVE 317 Query: 312 SQKGAGTRVTFAFLSKV 328 S+ GT V +++KV Sbjct: 318 SEINKGTIVKITYMAKV 334 >C2YAZ4.1 C2YAZ4_BACCE Putative uncharacterized protein Length = 324 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 120/321 (37%), Positives = 183/321 (57%), Gaps = 18/321 (5%) Query: 18 LLVYVLNTVILVMASYVFYGVNDI---LYPLFVSFFILLVYLAVTAVKLNQFTGKLSAAK 74 L+ + + ++ + Y F G N I LY +F+ F + YL F +L+ Sbjct: 9 LICFTIIQLLAIFLVYWFDGHNHITTALYAMFLGVFFMGSYLVFRYFTHRSFYERLA--- 65 Query: 75 SSPHIEVDDTNVKDKL--IFGAINEIHE-QYNGRLHQMNSSIKERN-----TLFSQWIHN 126 +P +D++ K + A+ E+ E QY R +Q I+ER T +QWIH Sbjct: 66 -NPMQSLDESVQKSDFAAVSAALQELLEVQY--RHYQNQLQIQERKNNDHLTFMNQWIHQ 122 Query: 127 MKVSISIIGLAAEKGTEEAISDIKEENRRLTQNLEECLNLLRLDDFARDYLPEKVNLHKV 186 MK +S+I L + + I EE RL + LE L + RL+ F +D+ E+V LHK+ Sbjct: 123 MKTPLSVIELITQDEVDSRFESINEETDRLKKGLEMALYVARLEAFTQDFYVERVQLHKI 182 Query: 187 VNKAVNARKREFIYKGVYPQIDIAKHLEICTDEKWCGYMLEQVLSNAVKYSD-KEGRVTV 245 VN +V+ KR FI VYP+++I K + + +D KW +++ Q+LSNA+KYS ++ V Sbjct: 183 VNDSVHEHKRFFIRNFVYPELEIDKDITVESDAKWLQFLIGQILSNAIKYSSGSREKIKV 242 Query: 246 RSELAGDRVLLSIQDYGVGIDQEDLPRVFDPFFTGKNGRDYRSATGIGLYMVKHIARKLG 305 ++ G+ V+L I D GVGI ++DLPRVF PFFTG+NGRD++ +TG+GLY+V I ++LG Sbjct: 243 KACKEGNNVILEIADNGVGIPKQDLPRVFKPFFTGENGRDFKESTGMGLYLVYEITKQLG 302 Query: 306 HRVSIDSQKGAGTRVTFAFLS 326 H V I S+ G GT V F + Sbjct: 303 HSVEIYSEVGKGTVVRIIFFN 323 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,797,835,614 Number of extensions: 73073596 Number of successful extensions: 271564 Number of sequences better than 1.0e-05: 12748 Number of HSP's gapped: 274346 Number of HSP's successfully gapped: 12764 Length of query: 328 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 192 Effective length of database: 1,779,438,163 Effective search space: 341652127296 Effective search space used: 341652127296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)