BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0015.p (226 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9DWT6.1 B9DWT6_CLOK1 Putative uncharacterized protein 283 6e-75 A5N339.1 A5N339_CLOK5 Predicted transcriptional regulator 283 6e-75 Q24R73.1 Q24R73_DESHY Putative uncharacterized protein 276 8e-73 Q97M29.1 Q97M29_CLOAB Response regulator (CheY-like domain and H... 215 2e-54 Q9K9E7.1 Q9K9E7_BACHD Two-component response regulator 208 2e-52 >B9DWT6.1 B9DWT6_CLOK1 Putative uncharacterized protein Length = 228 Score = 283 bits (725), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 137/224 (61%), Positives = 175/224 (78%), Gaps = 1/224 (0%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M IL+IED+ LQKYI+EYL AY FEV + D+ + + + P+LILLD+ LP DG Sbjct: 1 MSTILLIEDNESLQKYIREYLNAYGFEVHVLNDYDTLYKTISAVSPKLILLDVTLPKFDG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 FYYLK++RK + +PVII+SARS++S+QIRG+E GADDYITKPF IGVLLAKINA+LRR Sbjct: 61 FYYLKLIRKQYSIPVIIISARSEDSDQIRGIENGADDYITKPFSIGVLLAKINAMLRR-K 119 Query: 121 HPAQDTGYAVGSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELLEALW 180 Q G ++G+L L +++M++ YK+ ELSKNE+R++ + M+NAG+I+SRE+LLE LW Sbjct: 120 AEYQKGGVSIGTLCLNEDTMRISYKEVGTELSKNEYRVLRLLMKNAGQIVSREQLLEELW 179 Query: 181 DDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGYVFDPA 224 DD FVDDNTLTVNITRVKKKL GL N I+TKRGVGYVFDP Sbjct: 180 DDVSFVDDNTLTVNITRVKKKLMELGLQNCISTKRGVGYVFDPT 223 >A5N339.1 A5N339_CLOK5 Predicted transcriptional regulator Length = 228 Score = 283 bits (725), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 137/224 (61%), Positives = 175/224 (78%), Gaps = 1/224 (0%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M IL+IED+ LQKYI+EYL AY FEV + D+ + + + P+LILLD+ LP DG Sbjct: 1 MSTILLIEDNESLQKYIREYLNAYGFEVHVLNDYDTLYKTISAVSPKLILLDVTLPKFDG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 FYYLK++RK + +PVII+SARS++S+QIRG+E GADDYITKPF IGVLLAKINA+LRR Sbjct: 61 FYYLKLIRKQYSIPVIIISARSEDSDQIRGIENGADDYITKPFSIGVLLAKINAMLRR-K 119 Query: 121 HPAQDTGYAVGSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELLEALW 180 Q G ++G+L L +++M++ YK+ ELSKNE+R++ + M+NAG+I+SRE+LLE LW Sbjct: 120 AEYQKGGVSIGTLCLNEDTMRISYKEVGTELSKNEYRVLRLLMKNAGQIVSREQLLEELW 179 Query: 181 DDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGYVFDPA 224 DD FVDDNTLTVNITRVKKKL GL N I+TKRGVGYVFDP Sbjct: 180 DDVSFVDDNTLTVNITRVKKKLMELGLQNCISTKRGVGYVFDPT 223 >Q24R73.1 Q24R73_DESHY Putative uncharacterized protein Length = 228 Score = 276 bits (707), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 137/225 (60%), Positives = 170/225 (75%), Gaps = 1/225 (0%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M IL+IED+ +LQKYI EYL AYSF V + D+ +L+ + RP+LILLDINLP DG Sbjct: 1 MSSILLIEDNEQLQKYISEYLAAYSFTVHILEDYDTVLETIAAYRPKLILLDINLPKFDG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 FYYLK++RK + +P+II+SARS+E EQIRGME GADDYITKPF IGVL AKINA+LRR Sbjct: 61 FYYLKLIRKHYNIPIIIISARSEEGEQIRGMENGADDYITKPFSIGVLSAKINAMLRREA 120 Query: 121 HPAQDTGYAVGSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELLEALW 180 Q + A+ L L + +M Y ELSKNE+R++ + ++NAG+I+SRE+LLE LW Sbjct: 121 E-QQKSVIALAGLCLNENTMSAAYGGTATELSKNEYRVLRLLIKNAGQIVSREQLLEELW 179 Query: 181 DDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGYVFDPAD 225 DD FVDDNTLTVNITRVKK+L GL N I TKRGVGYVF+PA+ Sbjct: 180 DDVSFVDDNTLTVNITRVKKRLMEIGLPNCIETKRGVGYVFNPAN 224 >Q97M29.1 Q97M29_CLOAB Response regulator (CheY-like domain and HTH domain) Length = 228 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 111/225 (49%), Positives = 156/225 (69%), Gaps = 3/225 (1%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M KIL+IEDD KL ++ +EYL+ Y++EV I DF ++ ++ E+ P L+LLD+NLP DG Sbjct: 1 MYKILIIEDDKKLAEFTEEYLKRYNYEVFKIFDFKKVEEEFEKINPELVLLDVNLPYYDG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 F ++ R+ P+I +SARS E EQIRG+E GADDYITKPF +LLAK+ A +RR Y Sbjct: 61 FNLCRIFRRKSKAPIIFMSARSSEIEQIRGLEMGADDYITKPFSFELLLAKVQASIRRTY 120 Query: 121 HP-AQDTG--YAVGSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELLE 177 ++D V + + K + K+ YKD+ +EL+KNE +LI ++N ++++REELLE Sbjct: 121 GEYSEDNSEVLTVSGIIVDKNTFKMTYKDKEVELTKNELKLITKLLKNINKVVTREELLE 180 Query: 178 ALWDDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGYVFD 222 LWD+ FVDDNTLTVN+TR+K KLS G+ N + KRG+GY D Sbjct: 181 ELWDESSFVDDNTLTVNVTRIKNKLSEVGIKNVVKNKRGIGYYLD 225 >Q9K9E7.1 Q9K9E7_BACHD Two-component response regulator Length = 231 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 104/224 (46%), Positives = 152/224 (67%), Gaps = 3/224 (1%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M K+++IEDD+ L ++E L++ ++V DF IL + +P L+LLDINLP DG Sbjct: 1 MYKLMLIEDDIALSSLMKEQLESDGYQVFQSDDFKTILDDFKVMKPDLVLLDINLPYSDG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 ++ + +RK +P++I+S RS E +Q+ +E GADDY+TKPF + +LL K+ A++RRVY Sbjct: 61 YFLCRSMRKQSTIPIMIISGRSSEIDQMMAIELGADDYLTKPFTLNMLLTKVKAIIRRVY 120 Query: 121 --HPAQDTGY-AVGSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELLE 177 + QD + L + ++ L Y+ T+ELSKNE +++ FM+N L+REEL+E Sbjct: 121 GDYAKQDASMITIDDLSMNTNTLTLTYQQNTVELSKNEMKILKKFMENNERYLTREELIE 180 Query: 178 ALWDDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGYVF 221 +WDD FVDDNTLTVNITRVK+KL+ GL N I +KRGVGY+F Sbjct: 181 EVWDDITFVDDNTLTVNITRVKQKLASLGLPNQIKSKRGVGYLF 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,254,399,563 Number of extensions: 48669292 Number of successful extensions: 219939 Number of sequences better than 1.0e-05: 23846 Number of HSP's gapped: 204416 Number of HSP's successfully gapped: 23902 Length of query: 226 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 95 Effective length of database: 1,826,543,238 Effective search space: 173521607610 Effective search space used: 173521607610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)