BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0012.p (231 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJT5.1 C0ZJT5_BREBN Two-component response regulator 314 4e-84 A4J7U5.1 A4J7U5_DESRM Two component transcriptional regulator, w... 245 2e-63 A6NW29.1 A6NW29_9BACE Putative uncharacterized protein 245 3e-63 B0ABE6.1 B0ABE6_9CLOT Putative uncharacterized protein 244 4e-63 C1I3E0.1 C1I3E0_9CLOT DNA-binding response regulator 242 2e-62 >C0ZJT5.1 C0ZJT5_BREBN Two-component response regulator Length = 235 Score = 314 bits (804), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 148/227 (65%), Positives = 185/227 (81%) Query: 1 MKVLILEDEKPIRDLLSINLKRAGFDVVEAATGESALAIAGKDRDFDIAIIDLMLPGISG 60 MKVL+LEDEK IRD + INLKR G++V+EA TGE AL +A + D IAI+D+MLPGI G Sbjct: 1 MKVLLLEDEKSIRDFVRINLKREGYEVIEAGTGEEALDLADQQTDIVIAILDVMLPGIDG 60 Query: 61 FQVCGELRRQYPRLGIIMLTAKSQEVDKVMGLEAGADDYVVKPFSPVELTARVRALYRRM 120 F+VCG+LR++YPRLGIIMLTAKSQE+DKVMGLE GADDYV KPFSP EL ARV+AL+RR+ Sbjct: 61 FEVCGQLRKKYPRLGIIMLTAKSQELDKVMGLEFGADDYVSKPFSPAELLARVKALHRRL 120 Query: 121 YPEEAPPPQNSIQLAPFTLLLDERKLLKNTIDVPLTPTEYSIVKLLMEQPGKAVSRDDIL 180 P +N I +APF LLLDERKL++ ++ LTP E++I+KLL E KA+SRD+IL Sbjct: 121 TPIPEAEDKNEINIAPFRLLLDERKLIRTEQEIDLTPKEFAIIKLLAENANKAISRDEIL 180 Query: 181 TSVWGQYFMGELKIVDVNVSRIRQKIGQESSGPQYLETVWGFGYLWR 227 T+VWGQ+F+G+LKIVDVN+ RIRQKI + + P +LETVWG+GYLWR Sbjct: 181 TAVWGQFFVGDLKIVDVNIRRIRQKIEDDPAHPAFLETVWGYGYLWR 227 >A4J7U5.1 A4J7U5_DESRM Two component transcriptional regulator, winged helix family Length = 239 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/229 (51%), Positives = 157/229 (68%), Gaps = 3/229 (1%) Query: 2 KVLILEDEKPIRDLLSINLKRAGFDVVEAATGESALAIAGKDRDFDIAIIDLMLPGISGF 61 K+L+LEDE+ IR + +NLKR GF VEA +GE AL + +A++D+MLPGI GF Sbjct: 3 KILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDGF 62 Query: 62 QVCGELRRQYPRLGIIMLTAKSQEVDKVMGLEAGADDYVVKPFSPVELTARVRALYRRMY 121 +VC L+ +YP LGIIMLTAK QE DKV GL GADDYVVKPFSP EL AR+ AL RR+ Sbjct: 63 EVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRRLQ 122 Query: 122 P---EEAPPPQNSIQLAPFTLLLDERKLLKNTIDVPLTPTEYSIVKLLMEQPGKAVSRDD 178 P + +N + + + LD++K K ++ LTP E+ I+KL + KA+SRDD Sbjct: 123 PFNTQLGGEAENRLCSGIYCICLDKKKFYKGEKEIDLTPKEFEIIKLFLHNVDKAISRDD 182 Query: 179 ILTSVWGQYFMGELKIVDVNVSRIRQKIGQESSGPQYLETVWGFGYLWR 227 IL +WG++++G+LKIVDVN+ RIRQKI + S P LE VWG+GY WR Sbjct: 183 ILNQIWGRHYIGDLKIVDVNIRRIRQKIENDPSNPATLEKVWGYGYRWR 231 >A6NW29.1 A6NW29_9BACE Putative uncharacterized protein Length = 228 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/225 (54%), Positives = 157/225 (69%), Gaps = 1/225 (0%) Query: 2 KVLILEDEKPIRDLLSINLKRAGFDVVEAATGESALAIAGKDRDFDIAIIDLMLPGISGF 61 KVL+LEDE IR + INLKRAG++ +EA TGE ALA ++ D +A++D+MLP + GF Sbjct: 3 KVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRNPDIKVALLDIMLPDMDGF 62 Query: 62 QVCGELRRQYPRLGIIMLTAKSQEVDKVMGLEAGADDYVVKPFSPVELTARVRALYRRMY 121 +VC +R ++GIIMLTA++QE+DKV GL GADDYV KPFSP ELTAR+ ALYRR Sbjct: 63 EVCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRRTG 122 Query: 122 PEEAPPPQNSIQLAPFTLLLDERKLLKNTIDVPLTPTEYSIVKLLMEQPGKAVSRDDILT 181 E I PF L + L KN V LTP EYSIVKL ME+PG+A+SR++IL Sbjct: 123 GAEK-ESSGEISQPPFLLNTRNQTLEKNGQRVKLTPVEYSIVKLFMEKPGQALSREEILD 181 Query: 182 SVWGQYFMGELKIVDVNVSRIRQKIGQESSGPQYLETVWGFGYLW 226 +VWG+ + GELKIVDVN+ R+R KI + P Y+ TVWG+GY W Sbjct: 182 TVWGRDYFGELKIVDVNIRRLRIKIEDDPQNPAYITTVWGYGYKW 226 >B0ABE6.1 B0ABE6_9CLOT Putative uncharacterized protein Length = 232 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/226 (51%), Positives = 162/226 (71%) Query: 2 KVLILEDEKPIRDLLSINLKRAGFDVVEAATGESALAIAGKDRDFDIAIIDLMLPGISGF 61 K+L+LEDE IR +SINLKR G++++EA TG A+ ++ D IA++D+MLP +SG Sbjct: 4 KILVLEDEIGIRSFVSINLKREGYEIIEAGTGAEAIEKINENNDISIALLDVMLPDMSGI 63 Query: 62 QVCGELRRQYPRLGIIMLTAKSQEVDKVMGLEAGADDYVVKPFSPVELTARVRALYRRMY 121 +VC +R+++ ++GIIMLTAK+QE DK+ G +GADDY+VKPFS EL RV AL RR+ Sbjct: 64 EVCKYIRQKFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAALLRRVK 123 Query: 122 PEEAPPPQNSIQLAPFTLLLDERKLLKNTIDVPLTPTEYSIVKLLMEQPGKAVSRDDILT 181 EE+ N I PF L LD+RKL KN ++ LTPTE+SIVK LM +++SRD ILT Sbjct: 124 KEESSMKLNKIVSDPFELDLDKRKLFKNGKEIELTPTEFSIVKYLMVNAKQSLSRDQILT 183 Query: 182 SVWGQYFMGELKIVDVNVSRIRQKIGQESSGPQYLETVWGFGYLWR 227 VWG ++ + KIVDVN+ RIR KI + S P+Y++T+WG+GY +R Sbjct: 184 EVWGNNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFR 229 >C1I3E0.1 C1I3E0_9CLOT DNA-binding response regulator Length = 226 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 110/226 (48%), Positives = 167/226 (73%), Gaps = 5/226 (2%) Query: 2 KVLILEDEKPIRDLLSINLKRAGFDVVEAATGESALAIAGKDRDFDIAIIDLMLPGISGF 61 K+L++EDE+ IR L INL+R V+EA+TGE L +A + IA++D+MLPGI GF Sbjct: 3 KILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIENP-KIAVLDVMLPGIDGF 61 Query: 62 QVCGELRRQYPRLGIIMLTAKSQEVDKVMGLEAGADDYVVKPFSPVELTARVRALYRRMY 121 +VC +LR ++P +GIIMLTAK Q++DK+MGLE GADDY+VKPF+P+E+ R++AL RR+ Sbjct: 62 KVCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRRLG 121 Query: 122 PEEAPPPQNSIQLAPFTLLLDERKLLKNTIDVPLTPTEYSIVKLLMEQPGKAVSRDDILT 181 E+ ++ ++L PF + L +K+LK+ I++ +TP EY ++K+ +E P KA +RD++L Sbjct: 122 DED----KDKLELGPFLIDLYSQKVLKDNIEIDVTPKEYLLMKIFLENPNKAFTRDELLD 177 Query: 182 SVWGQYFMGELKIVDVNVSRIRQKIGQESSGPQYLETVWGFGYLWR 227 VWG+ + G+ KI+DVN+ R+R KI +S P+Y+ET+WG GY W+ Sbjct: 178 LVWGENYFGDAKIIDVNIRRLRAKIEDNASDPKYIETIWGIGYRWK 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,365,715,833 Number of extensions: 53681588 Number of successful extensions: 231106 Number of sequences better than 1.0e-05: 27458 Number of HSP's gapped: 196585 Number of HSP's successfully gapped: 27542 Length of query: 231 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 100 Effective length of database: 1,826,543,238 Effective search space: 182654323800 Effective search space used: 182654323800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)