BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0010.p (689 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z4N9.1 C0Z4N9_BREBN Probable ABC transporter permease protein 501 e-140 B3K3B6.1 B3K3B6_9BACI Transport system permease protein 483 e-134 B1DEG5.1 B1DEG5_9BACL Transport system permease protein 446 e-123 C2T710.1 C2T710_BACCE Iron compound ABC transporter, permease 427 e-117 C2YG76.1 C2YG76_BACCE Iron compound ABC transporter, permease 427 e-117 >C0Z4N9.1 C0Z4N9_BREBN Probable ABC transporter permease protein Length = 664 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/641 (43%), Positives = 386/641 (60%), Gaps = 4/641 (0%) Query: 45 AKIPAAAVWNGLLHRQDVMEHNLLWDIRMPRTXXXXXXXXXXXXXXXXXQTITKNPLASS 104 A I +V ++ QD+ +H+++ +R+PRT QT+T+NPLAS Sbjct: 22 ADISLRSVIQAIIAPQDISDHHMIQGVRLPRTVMGLLSGAALAIAGALMQTVTRNPLASE 81 Query: 105 DTLGINAGAYFMVVLGMVAFPAMQQQYPXXXXXXXXXXXXXXXXXXXXXRKATPVRLALS 164 TLG+NAGAYF VV GMV +P+ +P RK TPVR+ALS Sbjct: 82 TTLGVNAGAYFFVVFGMVFWPSFLHDHPLPFAMAGGILAAVTVYFMSGGRKGTPVRVALS 141 Query: 165 GMIVSMVLGAFTSALHIFFQTETQNLFLWGSGSLIQLDWSGVQYAWPFXXXXXXXXXXXX 224 GMIV++V + TSA+ +F + T +FLWGSGSL Q DWSGV+++WP+ Sbjct: 142 GMIVTLVYSSLTSAIILFNEETTNGIFLWGSGSLKQNDWSGVEFSWPWIVAGILISFFMA 201 Query: 225 RQFDALELDESTARSLGQRVGLTRAVGLGISVLMAAIVVSVVGPIGFVGLVAPHLVRLSG 284 RQ D L L+E TA+SLGQ+V TR + I++L+ + VSVVGPIGF+GLVAPHLVRLSG Sbjct: 202 RQLDVLSLNEETAKSLGQKVAKTRLFTMFIAILVTCVSVSVVGPIGFIGLVAPHLVRLSG 261 Query: 285 IRKHRLLLPASALWGALLITAADTLARMVRSNLGEMPVGAVMAIIGAPWLIWLVLTKMKN 344 I +HR LLP A+WGA L+ A+DT+ARM ++ GE+P GA+ A IG PWLIWL L ++ Sbjct: 262 ITQHRWLLPLCAIWGAALLVASDTIARMFINHYGELPAGAITAAIGGPWLIWLALRVSRS 321 Query: 345 ISGSGGGQSSMNIGGAALRMRFAPTAIFMTVLLIGVILVSMSLGGTRIPVSDLLESLVGR 404 ++ GG SM++GGA ++ + +TVLL+ V ++S+S G +P ++++ +G+ Sbjct: 322 MTAGTGG--SMSVGGAQRKVSYPLIVSMLTVLLVVVWMLSLSSGNLYLPWTEIIAIFMGQ 379 Query: 405 GDQAYSVL-LNLRLPRTLVAACGGIALAVSGVLIQSAVRNPLADASIIGVTSGAGFGALT 463 G++ YS L L LR+PR L A G+ALA+SG L+QSAVRNPLAD I+GVTSGAG GA+ Sbjct: 380 GNEMYSQLVLELRMPRLLTAMLAGVALAISGSLMQSAVRNPLADPQIVGVTSGAGVGAII 439 Query: 464 LLVVWPGXXXXXXXXXXXXXXXXXXXXVFTLAWRRALNPSVLILLGIAVSAIGSAGIQAM 523 +L+V P V+ ++WRR LNP +L L+GIAVSA G+A I + Sbjct: 440 VLLVLP-QFSAWMPLGAVAGGIISAAIVYAVSWRRGLNPIILTLVGIAVSAAGAALINIL 498 Query: 524 IVKASLWSSTAFIWLTGSTYGRSWEQFYSXXXXXXXXXXXXXXXGRRFDLLAFGDESSTG 583 IV + + ++ A WL GSTYGR W + GRR DLL+F DESSTG Sbjct: 499 IVHSMILAAPALTWLAGSTYGRGWMEVGRLLPTILVLAPIAWWLGRRVDLLSFNDESSTG 558 Query: 584 FGLPVRGTRLWAMXXXXXXXXXXXXSVGTIGFLGLMAPHAVRMMIGHHTRRXXXXXXXXX 643 GL VR TRL SVG +GF+GL+APHA RM++G H RR Sbjct: 559 LGLKVRVTRLSVAVIAVLLASAAVASVGAVGFIGLLAPHAARMLVGPHHRRAVVVSAMFG 618 Query: 644 XXXXXXADTVGRTVIAPTEIPSGLIIMLLGAPYFLFLMYRA 684 +D +GR V+ P +IP+G+++ LLGAPY LM+R+ Sbjct: 619 AVLLAASDLLGRIVMIPKDIPAGVVVALLGAPYLFLLMFRS 659 >B3K3B6.1 B3K3B6_9BACI Transport system permease protein Length = 701 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 273/642 (42%), Positives = 377/642 (58%), Gaps = 2/642 (0%) Query: 45 AKIPAAAVWNGLLHRQDVMEHNLLWDIRMPRTXXXXXXXXXXXXXXXXXQTITKNPLASS 104 A I V L+ QD+ +H+L+ +R+PRT QT+T+NPLAS Sbjct: 54 ADISVKTVVQALVSPQDIADHHLIRSVRLPRTVMGLLAGAALAVSGVLMQTVTRNPLASE 113 Query: 105 DTLGINAGAYFMVVLGMVAFPAMQQQYPXXXXXXXXXXXXXXXXXXXXXRKATPVRLALS 164 TLG+NAGAY VV GM+ +P + QY + +P+R+ALS Sbjct: 114 TTLGVNAGAYLAVVAGMIFWPGLLHQYALPLAVAGGTLAAVAVYALAGRTQGSPLRIALS 173 Query: 165 GMIVSMVLGAFTSALHIFFQTETQNLFLWGSGSLIQLDWSGVQYAWPFXXXXXXXXXXXX 224 GMIV++VL + TSAL + Q TQ + LWGSGSLIQ DW GV ++WP+ Sbjct: 174 GMIVTLVLSSVTSALLLLNQQTTQGILLWGSGSLIQNDWDGVAFSWPWIIGGLVVLCMAV 233 Query: 225 RQFDALELDESTARSLGQRVGLTRAVGLGISVLMAAIVVSVVGPIGFVGLVAPHLVRLSG 284 RQ+D L L+E +ARSLGQ+VG TR + +G ++++A + VSVVGPIGF+GL+APHLVRLSG Sbjct: 234 RQWDILTLNEESARSLGQKVGTTRLLAMGAAIVLACVTVSVVGPIGFIGLIAPHLVRLSG 293 Query: 285 IRKHRLLLPASALWGALLITAADTLARMVRSNLGEMPVGAVMAIIGAPWLIWLVLTKMKN 344 + +H L+P +ALWG+ L+ ADT+ARM + GE+PVGA+ A++GAP LIWL L ++ Sbjct: 294 VVRHAGLIPLAALWGSALLVGADTVARMFVNAYGELPVGAITAMLGAPCLIWLALRVSRS 353 Query: 345 -ISGSGGGQSSMNIGGAALRMRFAPTAIFMTVLLIGVILVSMSLGGTRIPVSDLLESLVG 403 I G G SM G + R+ + ++VLL+ V + S+ G RIP ++++ L G Sbjct: 354 LIGGRGASGGSMMAGTSLRRIPYPVLVALLSVLLVFVWVFSLVSGSLRIPFTEVVAVLTG 413 Query: 404 RGDQAY-SVLLNLRLPRTLVAACGGIALAVSGVLIQSAVRNPLADASIIGVTSGAGFGAL 462 G+ Y +LL+ RLPR L A GIALAVSG L+Q+AVRNPL D +IGVTSGAG GAL Sbjct: 414 GGEAMYRQILLDFRLPRLLTAGLSGIALAVSGSLLQNAVRNPLGDPQVIGVTSGAGAGAL 473 Query: 463 TLLVVWPGXXXXXXXXXXXXXXXXXXXXVFTLAWRRALNPSVLILLGIAVSAIGSAGIQA 522 L+V +P V+ ++WRR L+P++L L+GIAV+A+GSA I Sbjct: 474 LLMVGFPQLSAGWVPVGAVLGGMAAAALVYAVSWRRGLHPTILTLVGIAVAALGSAIINL 533 Query: 523 MIVKASLWSSTAFIWLTGSTYGRSWEQFYSXXXXXXXXXXXXXXXGRRFDLLAFGDESST 582 MIV A + + A W+ GSTY R W + GR+ DLL F +ESST Sbjct: 534 MIVHAKVDVAPALSWMAGSTYNRGWTEVQRIVPAILILLPLAAWLGRKVDLLTFNEESST 593 Query: 583 GFGLPVRGTRLWAMXXXXXXXXXXXXSVGTIGFLGLMAPHAVRMMIGHHTRRXXXXXXXX 642 G GL VR TR++ +VG++GF+GL+APHA RM++G R+ Sbjct: 594 GLGLNVRNTRMYVAIIAVLLASIAAANVGSVGFIGLLAPHAARMLVGARHRQSMVIAALL 653 Query: 643 XXXXXXXADTVGRTVIAPTEIPSGLIIMLLGAPYFLFLMYRA 684 AD +GR VI P E+PSG++ LGAPY L+LM ++ Sbjct: 654 GGILLAGADWIGRVVIIPKELPSGIVTAFLGAPYLLYLMGKS 695 Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 138/304 (45%), Gaps = 2/304 (0%) Query: 382 LVSMSLGGTRIPVSDLLESLVGRGDQA-YSVLLNLRLPRTLVAACGGIALAVSGVLIQSA 440 +S++ G I V ++++LV D A + ++ ++RLPRT++ G ALAVSGVL+Q+ Sbjct: 46 FISLTQGLADISVKTVVQALVSPQDIADHHLIRSVRLPRTVMGLLAGAALAVSGVLMQTV 105 Query: 441 VRNPLADASIIGVTSGAGFGALTLLVVWPGXXXXXXXXXXXXXXXXXXXXVFTLAWRRAL 500 RNPLA + +GV +GA + ++ WPG V+ LA R Sbjct: 106 TRNPLASETTLGVNAGAYLAVVAGMIFWPGLLHQYALPLAVAGGTLAAVAVYALAGRTQG 165 Query: 501 NPSVLILLGIAVSAIGSAGIQAMIVKASLWSSTAFIWLTGSTYGRSWEQFYSXXXXXXXX 560 +P + L G+ V+ + S+ A+++ + +W +GS W+ Sbjct: 166 SPLRIALSGMIVTLVLSSVTSALLLLNQQTTQGILLWGSGSLIQNDWDGVAFSWPWIIGG 225 Query: 561 XXXXXXXGRRFDLLAFGDESSTGFGLPVRGTRLWAMXXXXXXXXXXXXSVGTIGFLGLMA 620 R++D+L +ES+ G V TRL AM VG IGF+GL+A Sbjct: 226 LVVLCMAVRQWDILTLNEESARSLGQKVGTTRLLAMGAAIVLACVTVSVVGPIGFIGLIA 285 Query: 621 PHAVRMMIGHHTRRXXXXXXXXXXXXXXXADTVGRTVI-APTEIPSGLIIMLLGAPYFLF 679 PH VR+ ADTV R + A E+P G I +LGAP ++ Sbjct: 286 PHLVRLSGVVRHAGLIPLAALWGSALLVGADTVARMFVNAYGELPVGAITAMLGAPCLIW 345 Query: 680 LMYR 683 L R Sbjct: 346 LALR 349 >B1DEG5.1 B1DEG5_9BACL Transport system permease protein Length = 619 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 253/617 (41%), Positives = 363/617 (58%), Gaps = 1/617 (0%) Query: 68 LWDIRMPRTXXXXXXXXXXXXXXXXXQTITKNPLASSDTLGINAGAYFMVVLGMVAFPAM 127 +W +R+PR Q +T+NPLAS+ TLGINAGA+ + +G + FP + Sbjct: 1 MWTVRLPRMVIGILTGGALAVAGALFQNVTRNPLASAGTLGINAGAFLALTVGTIMFPGL 60 Query: 128 QQQYPXXXXXXXXXXXXXXXXXXXXXRKATPVRLALSGMIVSMVLGAFTSALHIFFQTET 187 +P KA+PVRLALSGMIV+M AFT L +F + +T Sbjct: 61 AMGFPLLLTFIGAIAAAGAAFVMAGGTKASPVRLALSGMIVTMTAAAFTGVLQLFHEQKT 120 Query: 188 QNLFLWGSGSLIQLDWSGVQYAWPFXXXXXXXXXXXXRQFDALELDESTARSLGQRVGLT 247 Q LF+WGSGSL+Q DW GVQ+AWP+ ++D +ELDE T SLGQ+VG Sbjct: 121 QGLFMWGSGSLVQNDWGGVQHAWPWIIGCFLLAFLLAGKWDLMELDEDTVTSLGQKVGRI 180 Query: 248 RAVGLGISVLMAAIVVSVVGPIGFVGLVAPHLVRLSGIRKHRLLLPASALWGALLITAAD 307 R GLGI+VL+AA VSVVGPIGFVGL+APHL+R+ G ++H +LLP S LWGA+++ +D Sbjct: 181 RLTGLGIAVLLAAAAVSVVGPIGFVGLIAPHLMRMLGAKRHVVLLPLSFLWGAIIVIGSD 240 Query: 308 TLARMVRSNLGEMPVGAVMAIIGAPWLIWLVLTKMKNISGSGGGQSSMNIGGAALRMRFA 367 +A + +LG +P GAV A+IG PWL WLVL +K G Q+ + G +A ++ F Sbjct: 241 AVAMHFKYSLGPLPAGAVTALIGGPWLAWLVLRTVKA-RKEGAPQTGTSPGRSATKVPFG 299 Query: 368 PTAIFMTVLLIGVILVSMSLGGTRIPVSDLLESLVGRGDQAYSVLLNLRLPRTLVAACGG 427 ++LL+ ++VS++ G RIPV+D++ +L G G + ++ +R+PRTLVAA G Sbjct: 300 WWVAIFSLLLVASLIVSLAFGSLRIPVADVVNALFGHGADSTQRIVEMRIPRTLVAALAG 359 Query: 428 IALAVSGVLIQSAVRNPLADASIIGVTSGAGFGALTLLVVWPGXXXXXXXXXXXXXXXXX 487 LAVSG+L+Q VRNPLAD SIIGVT GA GA+ +L V+ Sbjct: 360 ATLAVSGLLLQGIVRNPLADPSIIGVTGGASVGAMLMLAVFTQISVQWLPAGAFIGAVSA 419 Query: 488 XXXVFTLAWRRALNPSVLILLGIAVSAIGSAGIQAMIVKASLWSSTAFIWLTGSTYGRSW 547 VF L + + NPSV+ L+G+AVS++ SA +Q ++++ L ++A +WL+G+TY R+W Sbjct: 420 AVIVFLLGRKSSFNPSVVALIGLAVSSMASAIVQVLVIRMKLTLASALVWLSGTTYARNW 479 Query: 548 EQFYSXXXXXXXXXXXXXXXGRRFDLLAFGDESSTGFGLPVRGTRLWAMXXXXXXXXXXX 607 + F+ R+ D+L F D + T GL V TRL Sbjct: 480 DDFWQLVFWPIVLLPVAWYLARKVDVLQFSDATVTNLGLRVDRTRLVIGGVGVAMAAAAV 539 Query: 608 XSVGTIGFLGLMAPHAVRMMIGHHTRRXXXXXXXXXXXXXXXADTVGRTVIAPTEIPSGL 667 +VG+IGF+GL+APH RM++G R+ ADT+GR+++AP E+PSGL Sbjct: 540 ATVGSIGFIGLIAPHMTRMLVGPKYRKLVPLTALLGALLLVLADTMGRSLLAPKELPSGL 599 Query: 668 IIMLLGAPYFLFLMYRA 684 + ++GAPYF++LMYR+ Sbjct: 600 VAAVIGAPYFMYLMYRS 616 >C2T710.1 C2T710_BACCE Iron compound ABC transporter, permease Length = 678 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 244/646 (37%), Positives = 359/646 (55%), Gaps = 10/646 (1%) Query: 44 EAKIPAAAVWNGLLHRQDVMEHNLLWDIRMPRTXXXXXXXXXXXXXXXXXQTITKNPLAS 103 +A I + + + L+ +EH L +R+PR QT+TKNPLA Sbjct: 33 QANISYSMIIDALISPNQSLEHQTLIMLRLPRAVIAILAGGALAASGVILQTLTKNPLAE 92 Query: 104 SDTLGINAGAYFMVVLGMVAFPAMQQQYPXXXXXXXXXXXXXXXXXXXXXRKATPVRLAL 163 S T+GI++GAYF +V + P Q +K TP+R+AL Sbjct: 93 SSTMGIHSGAYFFLVAATIFLPKDLQINSLLFTFIGGAITALFVYRISGGKKGTPLRMAL 152 Query: 164 SGMIVSMVLGAFTSALHIFFQTETQNLFLWGSGSLIQLDWSGVQYAWPFXXXXXXXXXXX 223 +GM+V+++L AFT + +F++ ET LFLWG+GSLIQ +W GVQ+A+PF Sbjct: 153 AGMVVTLMLSAFTGTMQLFYENETAGLFLWGAGSLIQNNWDGVQFAFPFIIISFLVLLFM 212 Query: 224 XRQFDALELDESTARSLGQRVGLTRAVGLGISVLMAAIVVSVVGPIGFVGLVAPHLVRLS 283 R+ + L L + A SLG++ +TR + ++ + A++V+VVGPIGFVGLVAPHL+RL Sbjct: 213 SRKLNILLLGDDVAISLGEKTAVTRLIAFIAAIFLTAVIVTVVGPIGFVGLVAPHLMRLI 272 Query: 284 GIRKHRLLLPASALWGALLITAADTLARMVRSNLGEMPVGAVMAIIGAPWLIWLVLTKMK 343 G R+H LL +S LWGA+L+ AD + R++ E+PVGAV A+IG+PWLI+LV MK Sbjct: 273 GYRQHFTLLLSSFLWGAVLLLGADVVGRLIDPTGAELPVGAVTAMIGSPWLIYLVYRMMK 332 Query: 344 NISGSGGGQSSMNIGGAALRMRFAPTAIFMTVLLIGVILVSMSLG---GTRIPVSDLLES 400 S + N GA+ R I +++ L +V+++LG G+ + + Sbjct: 333 --SKQYMNDNGANAAGASSRYYSYKKVIIISITL---CIVTIALGVTIGSNAYIESITNV 387 Query: 401 LVGRGDQ-AYSVLLNLRLPRTLVAACGGIALAVSGVLIQSAVRNPLADASIIGVTSGAGF 459 + G+ Q ++++NLRLPR LVAA G LA+SG++ QS +RNPLAD SIIG++SGAG Sbjct: 388 ISGQLTQFDKNMMMNLRLPRMLVAAIAGACLAISGLVFQSILRNPLADPSIIGISSGAGV 447 Query: 460 GALTLLVVWPGXXXXXXXXXXXXXXXXXXXXVFTLAWRRALNPSVLILLGIAVSAIGSAG 519 GALT++ V+P V +W+ +P+ L L+GI +SA+GSA Sbjct: 448 GALTIMYVFPALPGFFLPIGAFIGGLLAVGIVLFFSWKSGFSPTALALIGIGISALGSAI 507 Query: 520 IQAMIVKASLWSSTAFIWLTGSTYGRSWEQFYSXXXX-XXXXXXXXXXXGRRFDLLAFGD 578 IQ IV+A+L + A WL+GSTY R W + ++ D+L GD Sbjct: 508 IQIFIVRANLNVAAALTWLSGSTYARGWNHLENIILSPSLILVFIIFFLIKQLDVLVLGD 567 Query: 579 ESSTGFGLPVRGTRLWAMXXXXXXXXXXXXSVGTIGFLGLMAPHAVRMMIGHHTRRXXXX 638 + +TG G PV TRL + +VGTI FLGL+APH R+++G + +R Sbjct: 568 DLATGLGQPVNKTRLALIVLATLLASVNIAAVGTIAFLGLVAPHLARIVVGMNHQRLFVC 627 Query: 639 XXXXXXXXXXXADTVGRTVIAPTEIPSGLIIMLLGAPYFLFLMYRA 684 AD +GRT+ P EIPSGL++ +LGAPYFL+LM ++ Sbjct: 628 SALFGAILLSIADLLGRTIAYPKEIPSGLVVAVLGAPYFLWLMRKS 673 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 8/287 (2%) Query: 64 EHNLLWDIRMPRTXXXXXXXXXXXXXXXXXQTITKNPLASSDTLGINAGAYFMVVLGMVA 123 + N++ ++R+PR Q+I +NPLA +GI++GA + M Sbjct: 396 DKNMMMNLRLPRMLVAAIAGACLAISGLVFQSILRNPLADPSIIGISSGAGVGALTIMYV 455 Query: 124 FPAMQQQYPXXXXXXXXXXXXXXXXXXXXXRKATPVRLALSGMIVSMVLGAFTSALHIFF 183 FPA+ + +P LAL G+ +S LG ++ + IF Sbjct: 456 FPALPGFFLPIGAFIGGLLAVGIVLFFSWKSGFSPTALALIGIGIS-ALG--SAIIQIFI 512 Query: 184 QTETQNL---FLWGSGSLIQLDWSGVQ-YAWPFXXXXXXXXXXXXRQFDALELDESTARS 239 N+ W SGS W+ ++ +Q D L L + A Sbjct: 513 VRANLNVAAALTWLSGSTYARGWNHLENIILSPSLILVFIIFFLIKQLDVLVLGDDLATG 572 Query: 240 LGQRVGLTRAVGLGISVLMAAIVVSVVGPIGFVGLVAPHLVRLSGIRKHRLLLPASALWG 299 LGQ V TR + ++ L+A++ ++ VG I F+GLVAPHL R+ H+ L SAL+G Sbjct: 573 LGQPVNKTRLALIVLATLLASVNIAAVGTIAFLGLVAPHLARIVVGMNHQRLFVCSALFG 632 Query: 300 ALLITAADTLARMVRSNLGEMPVGAVMAIIGAPWLIWLVLTKMKNIS 346 A+L++ AD L R + + E+P G V+A++GAP+ +WL+ K ++ Sbjct: 633 AILLSIADLLGRTI-AYPKEIPSGLVVAVLGAPYFLWLMRKSGKKVN 678 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 4/299 (1%) Query: 388 GGTRIPVSDLLESLVGRGDQ-AYSVLLNLRLPRTLVAACGGIALAVSGVLIQSAVRNPLA 446 G I S ++++L+ + L+ LRLPR ++A G ALA SGV++Q+ +NPLA Sbjct: 32 GQANISYSMIIDALISPNQSLEHQTLIMLRLPRAVIAILAGGALAASGVILQTLTKNPLA 91 Query: 447 DASIIGVTSGAGFGALTLLVVWPGXXXXXXXXXXXXXXXXXXXXVFTLAWRRALNPSVLI 506 ++S +G+ SGA F + + P V+ ++ + P + Sbjct: 92 ESSTMGIHSGAYFFLVAATIFLPKDLQINSLLFTFIGGAITALFVYRISGGKKGTPLRMA 151 Query: 507 LLGIAVSAIGSAGIQAMIVKASLWSSTAFIWLTGSTYGRSWEQFYSXXXXXXXXXXXXXX 566 L G+ V+ + SA M + ++ F+W GS +W+ Sbjct: 152 LAGMVVTLMLSAFTGTMQLFYENETAGLFLWGAGSLIQNNWDGVQFAFPFIIISFLVLLF 211 Query: 567 XGRRFDLLAFGDESSTGFGLPVRGTRLWAMXXXXXXXXXXXXSVGTIGFLGLMAPHAVRM 626 R+ ++L GD+ + G TRL A VG IGF+GL+APH +R+ Sbjct: 212 MSRKLNILLLGDDVAISLGEKTAVTRLIAFIAAIFLTAVIVTVVGPIGFVGLVAPHLMRL 271 Query: 627 MIGHHTRRXXXXXXXXXXXXXXXADTVGRTVIAPT--EIPSGLIIMLLGAPYFLFLMYR 683 + AD VGR +I PT E+P G + ++G+P+ ++L+YR Sbjct: 272 IGYRQHFTLLLSSFLWGAVLLLGADVVGR-LIDPTGAELPVGAVTAMIGSPWLIYLVYR 329 >C2YG76.1 C2YG76_BACCE Iron compound ABC transporter, permease Length = 678 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 244/646 (37%), Positives = 359/646 (55%), Gaps = 10/646 (1%) Query: 44 EAKIPAAAVWNGLLHRQDVMEHNLLWDIRMPRTXXXXXXXXXXXXXXXXXQTITKNPLAS 103 +A I + + + L+ +EH L +R+PR QT+TKNPLA Sbjct: 33 QANISYSMIIDALISPNQSLEHQTLIMLRLPRAVIAILAGGALAASGVILQTLTKNPLAE 92 Query: 104 SDTLGINAGAYFMVVLGMVAFPAMQQQYPXXXXXXXXXXXXXXXXXXXXXRKATPVRLAL 163 S T+GI++GAYF +V + P Q +K TP+R+AL Sbjct: 93 SSTMGIHSGAYFFLVAATIFLPKDLQINSLLFTFIGGAITALFVYRISGGKKGTPLRMAL 152 Query: 164 SGMIVSMVLGAFTSALHIFFQTETQNLFLWGSGSLIQLDWSGVQYAWPFXXXXXXXXXXX 223 +GM+V+++L AFT + +F++ ET LFLWG+GSLIQ +W GVQ+A+PF Sbjct: 153 AGMVVTLMLSAFTGTMQLFYENETAGLFLWGAGSLIQNNWDGVQFAFPFIIISFLVLLFM 212 Query: 224 XRQFDALELDESTARSLGQRVGLTRAVGLGISVLMAAIVVSVVGPIGFVGLVAPHLVRLS 283 R+ + L L + A SLG++ +TR + ++ + A++V+VVGPIGFVGLVAPHL+RL Sbjct: 213 SRKLNILLLGDDVAISLGEKTAVTRLIAFIAAIFLTAVIVTVVGPIGFVGLVAPHLMRLI 272 Query: 284 GIRKHRLLLPASALWGALLITAADTLARMVRSNLGEMPVGAVMAIIGAPWLIWLVLTKMK 343 G R+H LL +S LWGA+L+ AD + R++ E+PVGAV A+IG+PWLI+LV MK Sbjct: 273 GYRQHFTLLLSSFLWGAVLLLGADVVGRLIDPTGAELPVGAVTAMIGSPWLIYLVYRMMK 332 Query: 344 NISGSGGGQSSMNIGGAALRMRFAPTAIFMTVLLIGVILVSMSLG---GTRIPVSDLLES 400 S + N GA+ R I +++ L +V+++LG G+ + + Sbjct: 333 --SKQYMNDNGANAAGASSRYYSYKKVIIISITL---CIVTIALGVTIGSNAYIESITNV 387 Query: 401 LVGRGDQ-AYSVLLNLRLPRTLVAACGGIALAVSGVLIQSAVRNPLADASIIGVTSGAGF 459 + G+ Q ++++NLRLPR LVAA G LA+SG++ QS +RNPLAD SIIG++SGAG Sbjct: 388 ISGQLTQFDKNMMMNLRLPRMLVAAIAGACLAISGLVFQSILRNPLADPSIIGISSGAGV 447 Query: 460 GALTLLVVWPGXXXXXXXXXXXXXXXXXXXXVFTLAWRRALNPSVLILLGIAVSAIGSAG 519 GALT++ V+P V +W+ +P+ L L+GI +SA+GSA Sbjct: 448 GALTIMYVFPALPGFFLPIGAFIGGLLAVGIVLFFSWKSGFSPTALALIGIGISALGSAI 507 Query: 520 IQAMIVKASLWSSTAFIWLTGSTYGRSWEQFYSXXXX-XXXXXXXXXXXGRRFDLLAFGD 578 IQ IV+A+L + A WL+GSTY R W + ++ D+L GD Sbjct: 508 IQIFIVRANLNVAAALTWLSGSTYARGWNHLENIILYPSLILVFIIFFLIKQLDVLVLGD 567 Query: 579 ESSTGFGLPVRGTRLWAMXXXXXXXXXXXXSVGTIGFLGLMAPHAVRMMIGHHTRRXXXX 638 + +TG G PV TRL + +VGTI FLGL+APH R+++G + +R Sbjct: 568 DLATGLGQPVNKTRLALIVLATLLASVNIAAVGTIAFLGLVAPHLARIVVGMNHQRLFVC 627 Query: 639 XXXXXXXXXXXADTVGRTVIAPTEIPSGLIIMLLGAPYFLFLMYRA 684 AD +GRT+ P EIPSGL++ +LGAPYFL+LM ++ Sbjct: 628 SALFGAILLSIADLLGRTIAYPKEIPSGLVVAVLGAPYFLWLMRKS 673 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 10/288 (3%) Query: 64 EHNLLWDIRMPRTXXXXXXXXXXXXXXXXXQTITKNPLASSDTLGINAGAYFMVVLGMVA 123 + N++ ++R+PR Q+I +NPLA +GI++GA + M Sbjct: 396 DKNMMMNLRLPRMLVAAIAGACLAISGLVFQSILRNPLADPSIIGISSGAGVGALTIMYV 455 Query: 124 FPAMQQQYPXXXXXXXXXXXXXXXXXXXXXRKATPVRLALSGMIVSMVLGAFTSALHIFF 183 FPA+ + +P LAL G+ +S LG ++ + IF Sbjct: 456 FPALPGFFLPIGAFIGGLLAVGIVLFFSWKSGFSPTALALIGIGIS-ALG--SAIIQIFI 512 Query: 184 QTETQNL---FLWGSGSLIQLDWSGVQ--YAWPFXXXXXXXXXXXXRQFDALELDESTAR 238 N+ W SGS W+ ++ +P +Q D L L + A Sbjct: 513 VRANLNVAAALTWLSGSTYARGWNHLENIILYP-SLILVFIIFFLIKQLDVLVLGDDLAT 571 Query: 239 SLGQRVGLTRAVGLGISVLMAAIVVSVVGPIGFVGLVAPHLVRLSGIRKHRLLLPASALW 298 LGQ V TR + ++ L+A++ ++ VG I F+GLVAPHL R+ H+ L SAL+ Sbjct: 572 GLGQPVNKTRLALIVLATLLASVNIAAVGTIAFLGLVAPHLARIVVGMNHQRLFVCSALF 631 Query: 299 GALLITAADTLARMVRSNLGEMPVGAVMAIIGAPWLIWLVLTKMKNIS 346 GA+L++ AD L R + + E+P G V+A++GAP+ +WL+ K ++ Sbjct: 632 GAILLSIADLLGRTI-AYPKEIPSGLVVAVLGAPYFLWLMRKSGKKVN 678 Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 4/299 (1%) Query: 388 GGTRIPVSDLLESLVGRGDQ-AYSVLLNLRLPRTLVAACGGIALAVSGVLIQSAVRNPLA 446 G I S ++++L+ + L+ LRLPR ++A G ALA SGV++Q+ +NPLA Sbjct: 32 GQANISYSMIIDALISPNQSLEHQTLIMLRLPRAVIAILAGGALAASGVILQTLTKNPLA 91 Query: 447 DASIIGVTSGAGFGALTLLVVWPGXXXXXXXXXXXXXXXXXXXXVFTLAWRRALNPSVLI 506 ++S +G+ SGA F + + P V+ ++ + P + Sbjct: 92 ESSTMGIHSGAYFFLVAATIFLPKDLQINSLLFTFIGGAITALFVYRISGGKKGTPLRMA 151 Query: 507 LLGIAVSAIGSAGIQAMIVKASLWSSTAFIWLTGSTYGRSWEQFYSXXXXXXXXXXXXXX 566 L G+ V+ + SA M + ++ F+W GS +W+ Sbjct: 152 LAGMVVTLMLSAFTGTMQLFYENETAGLFLWGAGSLIQNNWDGVQFAFPFIIISFLVLLF 211 Query: 567 XGRRFDLLAFGDESSTGFGLPVRGTRLWAMXXXXXXXXXXXXSVGTIGFLGLMAPHAVRM 626 R+ ++L GD+ + G TRL A VG IGF+GL+APH +R+ Sbjct: 212 MSRKLNILLLGDDVAISLGEKTAVTRLIAFIAAIFLTAVIVTVVGPIGFVGLVAPHLMRL 271 Query: 627 MIGHHTRRXXXXXXXXXXXXXXXADTVGRTVIAPT--EIPSGLIIMLLGAPYFLFLMYR 683 + AD VGR +I PT E+P G + ++G+P+ ++L+YR Sbjct: 272 IGYRQHFTLLLSSFLWGAVLLLGADVVGR-LIDPTGAELPVGAVTAMIGSPWLIYLVYR 329 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,143,834,134 Number of extensions: 104300090 Number of successful extensions: 444178 Number of sequences better than 1.0e-05: 5247 Number of HSP's gapped: 419146 Number of HSP's successfully gapped: 10557 Length of query: 689 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 546 Effective length of database: 1,713,491,058 Effective search space: 935566117668 Effective search space used: 935566117668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 135 (56.6 bits)