BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0009.p (371 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3B5.1 B3K3B5_9BACI Periplasmic binding protein 300 2e-79 Q84E44.1 Q84E44_BACCI Iron III dicitrate transport protein-like ... 300 2e-79 B1DEG6.1 B1DEG6_9BACL Periplasmic binding protein 282 4e-74 C2WCS8.1 C2WCS8_BACCE Iron compound ABC transporter, iron compou... 276 2e-72 C2SQY3.1 C2SQY3_BACCE Iron compound ABC transporter, iron compou... 275 6e-72 >B3K3B5.1 B3K3B5_9BACI Periplasmic binding protein Length = 344 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 156/298 (52%), Positives = 194/298 (65%), Gaps = 2/298 (0%) Query: 76 GSATAAGP--IVLKDAKGEVKLDKPAQKVVVLEWTFTEDVIALGVQPVGNADNENYKLYV 133 G T A P +K A GE K+ ++VV LEW + EDV+ALGVQPVG AD E K +V Sbjct: 47 GDKTEAAPETRTIKHAMGETKITGVPKRVVALEWLYAEDVLALGVQPVGIADIEGMKQWV 106 Query: 134 TSEAPLDAGVTDVGTRSEPNLETIASLKPDLIIANTDNHEAIYDQLKAIAPTLILGLYPP 193 + + VTDVGTR EPNLE IASLKPDLII N EA ++ +IAPTL+ YP Sbjct: 107 NIPVEIGSDVTDVGTRQEPNLELIASLKPDLIIGLKSNLEAGFETYNSIAPTLVFDPYPA 166 Query: 194 EGQGDQYTEMENIFKTIAAAVGKTAEGDKVLADLDAHYADAKTKLAAAGKEGLNYVLTQA 253 EGQGDQY EM N F TIA + K E VL++LD YADAK KL AAG + L Sbjct: 167 EGQGDQYEEMINTFNTIADVLDKKNEAANVLSNLDQTYADAKAKLEAAGMTEKPFALAMG 226 Query: 254 YSYQNAATMRLFTDNSLAVQTLDRIGLKNDWKPEKFEMYGFTTSTVEALPAVKDTNLLYI 313 YS QNAA R+ TDNSLAV+ L+ IGL N KP +FE+YGFTT+ VEALPA++D N L+I Sbjct: 227 YSNQNAAVFRISTDNSLAVKILEHIGLTNAHKPGQFEVYGFTTADVEALPALQDANFLHI 286 Query: 314 VQKDDDIFSKELKDNSVWNGLNFVKEKRTFGLASTTWVFGGPVSSKVLVDEVVNTLTK 371 +Q D+I +LKDN VW GLNFVKE R + L W +GGP+S++ + + + LT+ Sbjct: 287 IQDSDNIIENQLKDNPVWKGLNFVKEDRVYALGGDMWPYGGPLSAQTMAQKTADLLTQ 344 >Q84E44.1 Q84E44_BACCI Iron III dicitrate transport protein-like protein Length = 347 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 149/286 (52%), Positives = 193/286 (67%) Query: 86 LKDAKGEVKLDKPAQKVVVLEWTFTEDVIALGVQPVGNADNENYKLYVTSEAPLDAGVTD 145 + A GE ++ +++V LEW + EDV+ALGVQPVG AD E +V + VTD Sbjct: 62 FEHALGETEITGVPERIVALEWVYAEDVLALGVQPVGIADIEGMNKWVNIPVEIGPEVTD 121 Query: 146 VGTRSEPNLETIASLKPDLIIANTDNHEAIYDQLKAIAPTLILGLYPPEGQGDQYTEMEN 205 +G R EPNLE IASLKPDLII EA YD LK+IAPTLI YP EG+GDQY EM N Sbjct: 122 IGLRQEPNLEIIASLKPDLIIGVKSTAEANYDALKSIAPTLIFDPYPGEGEGDQYDEMIN 181 Query: 206 IFKTIAAAVGKTAEGDKVLADLDAHYADAKTKLAAAGKEGLNYVLTQAYSYQNAATMRLF 265 FKTIA A+GK E ++VL+ L+ YADAK KL AAG VL YS QNA T R+ Sbjct: 182 TFKTIADAIGKQEEAEQVLSSLEETYADAKAKLEAAGMTERPIVLAMGYSNQNAVTFRIS 241 Query: 266 TDNSLAVQTLDRIGLKNDWKPEKFEMYGFTTSTVEALPAVKDTNLLYIVQKDDDIFSKEL 325 TDN+LA++TL+ IGL N +K +FE+YGFTT+ VEALPA++D N L+I+Q+ D+I +L Sbjct: 242 TDNALAIKTLEHIGLTNAYKANQFEIYGFTTTDVEALPALQDANFLHIIQETDNIIDNQL 301 Query: 326 KDNSVWNGLNFVKEKRTFGLASTTWVFGGPVSSKVLVDEVVNTLTK 371 KDN VW GLNFVKE R + L W +GGP+S++++ + + L + Sbjct: 302 KDNPVWKGLNFVKEDRVYALGGDMWPYGGPLSAQLMAQKTADLLAQ 347 >B1DEG6.1 B1DEG6_9BACL Periplasmic binding protein Length = 343 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 147/285 (51%), Positives = 190/285 (66%), Gaps = 2/285 (0%) Query: 86 LKDAKGEVKLDKPAQKVVVLEWTFTEDVIALGVQPVGNADNENY-KLYVTSEAPLDAGVT 144 +K A GE K+ +KVVVLEWT+ ED+IALGVQP G AD + Y + Y + LDA V Sbjct: 59 IKHALGETKITGTPKKVVVLEWTYAEDLIALGVQPTGVADVKGYGEWYGAIDPKLDATVV 118 Query: 145 DVGTRSEPNLETIASLKPDLIIANTDNHEAIYDQLKAIAPTLILGLYPPEGQGDQYTEME 204 DVGTR EP++ETI SL+PDLII HEAIYDQL AIAPTLI YP G DQY+EME Sbjct: 119 DVGTRQEPSIETITSLEPDLIIGVNFRHEAIYDQLSAIAPTLIFNPYPENGGLDQYSEME 178 Query: 205 NIFKTIAAAVGKTAEGDKVLADLDAHYADAKTKLAAAGKEGLNYVLTQAYSYQNAATMRL 264 F IA A+GK AEG+KVLADL ++Y ++K KLA+AGKEG V TQA++ + AT RL Sbjct: 179 QTFSAIADALGKKAEGEKVLADLHSYYDESKAKLASAGKEGQEVVFTQAWTNEGVATFRL 238 Query: 265 FTDNSLAVQTLDRIGLKNDWKPEKFEMYGFTTSTVEALPAVKDTNLLYIVQKDDDIFSKE 324 FTDNS+A+ L +IGLKN + F+ YG++ + +E L D ++LY D +FS+ Sbjct: 239 FTDNSMAMAILAKIGLKNAHQDSTFQQYGYSETDIEGLTKTPDASVLYTTSATDTVFSEL 298 Query: 325 LKDNSVWNGLNFVKEKRTFGLASTTWVFGGPVSSKVLVDEVVNTL 369 L N V+ LNF KE R + + W FGGP+S+K+LV+ + L Sbjct: 299 LPKNEVYKNLNFAKENRVYDMKG-IWPFGGPLSAKLLVERTLEAL 342 >C2WCS8.1 C2WCS8_BACCE Iron compound ABC transporter, iron compound-binding protein Length = 324 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/287 (49%), Positives = 187/287 (65%), Gaps = 2/287 (0%) Query: 84 IVLKDAKGEVKLDKPAQKVVVLEWTFTEDVIALGVQPVGNADNENYKLYVTSEAPLDAGV 143 I +K A+GE KLDKPA+KVVVLEW + ED++ALGVQPVG AD +NY +V +E V Sbjct: 37 ITIKHAEGETKLDKPAKKVVVLEWVYAEDLLALGVQPVGMADIKNYNKWVNTETKPSKDV 96 Query: 144 TDVGTRSEPNLETIASLKPDLIIANTDNHEAIYDQLKAIAPTLILGLYPPEGQGDQYTEM 203 DVGTR +PNLE I LKPDLII + +AI ++L+ IAPT++ P D + EM Sbjct: 97 VDVGTRQQPNLEEINRLKPDLIITASFRSKAIKNELEQIAPTVMFD--PSTSNNDHFAEM 154 Query: 204 ENIFKTIAAAVGKTAEGDKVLADLDAHYADAKTKLAAAGKEGLNYVLTQAYSYQNAATMR 263 FK IA AVGK +G KVLAD+D +ADAK K+ A + N VLTQ+++ ++ T R Sbjct: 155 TETFKQIAKAVGKEEQGKKVLADMDKTFADAKEKIEKANLKDKNIVLTQSFTAKDVPTFR 214 Query: 264 LFTDNSLAVQTLDRIGLKNDWKPEKFEMYGFTTSTVEALPAVKDTNLLYIVQKDDDIFSK 323 L TDNS A+Q ++GL N ++P K E GF +TVEAL V+D N LYIV DD+IF K Sbjct: 215 LLTDNSTAIQITKKLGLTNAFEPGKSEPDGFKQTTVEALQGVQDANFLYIVADDDNIFDK 274 Query: 324 ELKDNSVWNGLNFVKEKRTFGLASTTWVFGGPVSSKVLVDEVVNTLT 370 +LK N W L F KE + + L TW+FGGP S++ L +V + +T Sbjct: 275 QLKGNPAWEELKFKKEDKMYKLKGDTWIFGGPESAQSLAKQVADVMT 321 >C2SQY3.1 C2SQY3_BACCE Iron compound ABC transporter, iron compound-binding protein Length = 335 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 139/287 (48%), Positives = 189/287 (65%), Gaps = 2/287 (0%) Query: 84 IVLKDAKGEVKLDKPAQKVVVLEWTFTEDVIALGVQPVGNADNENYKLYVTSEAPLDAGV 143 I +K A+GE KLDKPA+KVVVLEW ++ED++ALGVQPVG AD +NY +V +E V Sbjct: 48 ITIKHAEGETKLDKPAKKVVVLEWVYSEDLLALGVQPVGMADIKNYNKWVNTETKPGKDV 107 Query: 144 TDVGTRSEPNLETIASLKPDLIIANTDNHEAIYDQLKAIAPTLILGLYPPEGQGDQYTEM 203 DVGTR +PNLE I+ LKPDLII + +AI ++L+ IAPT++ P D + EM Sbjct: 108 VDVGTRQQPNLEEISRLKPDLIITASFRSKAIKNELEQIAPTVMFD--PSTSNNDHFAEM 165 Query: 204 ENIFKTIAAAVGKTAEGDKVLADLDAHYADAKTKLAAAGKEGLNYVLTQAYSYQNAATMR 263 FK IA AVGK EG KVLAD+D +ADAK K+ A + N + QA++ +N T R Sbjct: 166 TETFKQIAKAVGKEEEGKKVLADMDKTFADAKAKIDKADLKDKNIAMVQAFTAKNVPTFR 225 Query: 264 LFTDNSLAVQTLDRIGLKNDWKPEKFEMYGFTTSTVEALPAVKDTNLLYIVQKDDDIFSK 323 + TDNS A+Q ++GL N ++ K E GF +TVE+L +V+++N +YIV DD+IF Sbjct: 226 ILTDNSTALQVTKKLGLTNTFEAGKSEADGFKQTTVESLQSVQNSNFIYIVADDDNIFDT 285 Query: 324 ELKDNSVWNGLNFVKEKRTFGLASTTWVFGGPVSSKVLVDEVVNTLT 370 +LK N W GLNF KE + + L TW+FGGP S+K L +V + +T Sbjct: 286 QLKGNPAWEGLNFKKEDKMYKLKGDTWIFGGPESAKSLATQVADVMT 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,903,751,741 Number of extensions: 76725916 Number of successful extensions: 151139 Number of sequences better than 1.0e-05: 1322 Number of HSP's gapped: 150244 Number of HSP's successfully gapped: 1324 Length of query: 371 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 234 Effective length of database: 1,770,017,148 Effective search space: 414184012632 Effective search space used: 414184012632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)