BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0560.0007.p
         (124 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJJ5.1 B3KJJ5_9BACI NLP/P60 protein                                 183   5e-45
B1DK98.1 B1DK98_9BACL NLP/P60 protein                                 154   2e-36
B3KKA3.1 B3KKA3_9BACI NLP/P60 protein                                 143   5e-33
B8I8D4.1 B8I8D4_CLOCE NLP/P60 protein                                 136   8e-31
B7GM86.1 B7GM86_ANOFW Cell wall-associated hydrolase containing ...   130   5e-29

>B3KJJ5.1 B3KJJ5_9BACI NLP/P60 protein
          Length = 158

 Score =  183 bits (464), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 103/123 (83%), Gaps = 1/123 (0%)

Query: 1   VNGVLGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGD 60
           V  ++GTPY WGGTT +GFDCSGFILY+   F+  DLPRT+ SQAKAG  V ++DLR+GD
Sbjct: 34  VKQLVGTPYKWGGTTTSGFDCSGFILYMFRNFDM-DLPRTSQSQAKAGVHVDREDLRVGD 92

Query: 61  LVFFNTFGNGVSHAGIYIGDGQFAHSSSSKGVRISKLSDSYYRDRYVTARRVVSDTSYRQ 120
           LVFFNT G+G+SHAG+YIGDGQFAH+SSSKGVRISKLSDSYY  RYVTARRV+S  +Y +
Sbjct: 93  LVFFNTSGSGISHAGVYIGDGQFAHASSSKGVRISKLSDSYYEPRYVTARRVLSQENYAK 152

Query: 121 MAG 123
           + G
Sbjct: 153 LVG 155


>B1DK98.1 B1DK98_9BACL NLP/P60 protein
          Length = 155

 Score =  154 bits (389), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 96/124 (77%), Gaps = 1/124 (0%)

Query: 1   VNGVLGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGD 60
           V+ ++GTPYV GGT+  GFDCSGF  Y+ +K    DLPRT+ SQ++ G +++K DL  GD
Sbjct: 32  VSNLIGTPYVAGGTSTKGFDCSGFTSYVFDKMGI-DLPRTSTSQSETGKKIAKSDLVAGD 90

Query: 61  LVFFNTFGNGVSHAGIYIGDGQFAHSSSSKGVRISKLSDSYYRDRYVTARRVVSDTSYRQ 120
           LVFFNT G GVSH GIY+GDG+FAH+SSSKGV IS LSDSYY +RYVTARRV+  +++ +
Sbjct: 91  LVFFNTNGRGVSHVGIYVGDGKFAHASSSKGVTISNLSDSYYVNRYVTARRVMDPSTFDK 150

Query: 121 MAGE 124
            A E
Sbjct: 151 YADE 154


>B3KKA3.1 B3KKA3_9BACI NLP/P60 protein
          Length = 157

 Score =  143 bits (360), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 1/122 (0%)

Query: 1   VNGVLGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGD 60
           +   +G  Y  GGTT  GFDCSGF  YI +K     LPRT+G+Q K GT V+K  L+ GD
Sbjct: 33  IKPAIGVSYKTGGTTTNGFDCSGFTSYIYKKLGL-SLPRTSGAQYKVGTAVAKSKLKAGD 91

Query: 61  LVFFNTFGNGVSHAGIYIGDGQFAHSSSSKGVRISKLSDSYYRDRYVTARRVVSDTSYRQ 120
           LVFFNT G GVSH GIY+G G+FAHSSSS+GV IS LS SYY +RYV A+RV+S ++Y+ 
Sbjct: 92  LVFFNTSGRGVSHVGIYVGGGKFAHSSSSRGVIISPLSQSYYANRYVGAKRVMSQSTYKS 151

Query: 121 MA 122
           +A
Sbjct: 152 VA 153


>B8I8D4.1 B8I8D4_CLOCE NLP/P60 protein
          Length = 265

 Score =  136 bits (342), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 81/109 (74%), Gaps = 1/109 (0%)

Query: 5   LGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDLVFF 64
           +G PYVWGGTT +GFDCSG+I Y+  K +   LPRT   Q  AG+ VSK +L+ GDLVFF
Sbjct: 158 IGVPYVWGGTTPSGFDCSGYIKYVFAK-HGISLPRTAAEQYNAGSYVSKANLKAGDLVFF 216

Query: 65  NTFGNGVSHAGIYIGDGQFAHSSSSKGVRISKLSDSYYRDRYVTARRVV 113
            T+  G SH GIY+G+G F H+SSS+GV IS LS+SY+ +RY+ ARR++
Sbjct: 217 TTYKPGPSHLGIYLGNGSFIHASSSQGVIISSLSNSYFAERYIGARRII 265


>B7GM86.1 B7GM86_ANOFW Cell wall-associated hydrolase containing three SLH
           domains
          Length = 324

 Score =  130 bits (326), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 84/120 (70%), Gaps = 4/120 (3%)

Query: 5   LGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDLVFF 64
           +G PY +GG++  GFDCSGF  ++M       L RTT  Q K G  V K+DLR+GDLVFF
Sbjct: 38  VGVPYQFGGSSEKGFDCSGFTRHVMGGLGVA-LARTTAEQYKQGEAVKKEDLRIGDLVFF 96

Query: 65  NTFGNGVSHAGIYIGDGQFAHSSSSKGVRISKLSDSYYRDRYVTARRVVSDTSYRQMAGE 124
            T+  G SHAGIYIG+ QF H+SSS+G+ I+ L+DSYY+ RY+ ARRV+   +Y Q AG+
Sbjct: 97  ETYKKGPSHAGIYIGNDQFIHASSSRGITITSLNDSYYKKRYIGARRVL---AYAQAAGQ 153


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 754,019,368
Number of extensions: 29551927
Number of successful extensions: 68911
Number of sequences better than 1.0e-05: 2777
Number of HSP's gapped: 64522
Number of HSP's successfully gapped: 2799
Length of query: 124
Length of database: 3,060,696,203
Length adjustment: 90
Effective length of query: 34
Effective length of database: 2,212,804,853
Effective search space: 75235365002
Effective search space used: 75235365002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)