BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0002.p (213 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DE15.1 B1DE15_9BACL Putative uncharacterized protein 266 9e-70 C0CE35.1 C0CE35_9FIRM Putative uncharacterized protein 246 1e-63 A9KPR0.1 A9KPR0_CLOPH Putative uncharacterized protein 182 1e-44 A9KPR7.1 A9KPR7_CLOPH Putative uncharacterized protein 174 4e-42 C1YMX5.1 C1YMX5_NOCDA Uncharacterized conserved protein 110 1e-22 >B1DE15.1 B1DE15_9BACL Putative uncharacterized protein Length = 195 Score = 266 bits (680), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 125/194 (64%), Positives = 146/194 (75%) Query: 20 NFNWLNPGSIRFENEAMILHAPEHSDFFCNNGAVSEEGATPSTLANAPFFFTEVSGDFVM 79 NF W+N I + + + A E SDFF N GAV++EG TP +L NAPF++T +SGDFVM Sbjct: 2 NFEWMNESEIIETDGRIEIQATEKSDFFINPGAVADEGITPESLCNAPFYYTNISGDFVM 61 Query: 80 RVKVQHDFKDIYDSASVMVMKDINVWAKLCFELTDFNTHAVVSVVTNPLSDDANGNNIDS 139 RVKV HDFKD YDS+S+MVMKD+ WAK CFELTDF+THAVVSVVT SDDANG NID Sbjct: 62 RVKVSHDFKDTYDSSSIMVMKDLTHWAKACFELTDFDTHAVVSVVTKEESDDANGCNIDD 121 Query: 140 NSVWLQITRVGQSFAFHYSLTGTQFYMARFFNLPVEETVKVGFVPQAPTGKGGDRIYSNF 199 N+VWLQ+ R G SFAFHYS G FYM RFF LP +ETVKVG + QAP G GG RIY N Sbjct: 122 NTVWLQVCRSGNSFAFHYSTDGENFYMMRFFALPADETVKVGLLAQAPLGNGGKRIYENL 181 Query: 200 SLENKTVKNIRAGE 213 ++E KTVKNIR G+ Sbjct: 182 TIERKTVKNIRMGK 195 >C0CE35.1 C0CE35_9FIRM Putative uncharacterized protein Length = 195 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 111/193 (57%), Positives = 137/193 (70%) Query: 21 FNWLNPGSIRFENEAMILHAPEHSDFFCNNGAVSEEGATPSTLANAPFFFTEVSGDFVMR 80 F WLN IR + + + AP +DFFC EEG P +L NAP+++TEV GDFV+R Sbjct: 3 FQWLNQSKIRQTGDRIEILAPAKTDFFCGGIDACEEGILPESLCNAPYYYTEVEGDFVLR 62 Query: 81 VKVQHDFKDIYDSASVMVMKDINVWAKLCFELTDFNTHAVVSVVTNPLSDDANGNNIDSN 140 V+V H F+D YDSASVMVMKD WAK CFELTDF THA VSVVT SDDANG N++ N Sbjct: 63 VQVSHAFQDTYDSASVMVMKDETCWAKCCFELTDFGTHAAVSVVTRGDSDDANGCNLEGN 122 Query: 141 SVWLQITRVGQSFAFHYSLTGTQFYMARFFNLPVEETVKVGFVPQAPTGKGGDRIYSNFS 200 + WLQ+ RVG FAFHYS G +YM R+F+LP +KVG + QAPTG+GG R+Y + + Sbjct: 123 TAWLQVCRVGNHFAFHYSADGEHYYMMRYFHLPALPVIKVGLLAQAPTGQGGIRVYEHLT 182 Query: 201 LENKTVKNIRAGE 213 +E KTVKNIRAG+ Sbjct: 183 IEKKTVKNIRAGK 195 >A9KPR0.1 A9KPR0_CLOPH Putative uncharacterized protein Length = 191 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 84/196 (42%), Positives = 124/196 (63%), Gaps = 7/196 (3%) Query: 17 DFENFNWLNPGSIRFENEAMILHAPEHSDFFCNNGAVSEEGATPSTLANAPFFFTEVSGD 76 ++ +F W + + ++AP +D+F N A + +APFF+ EV GD Sbjct: 2 NYNDFQWTIETQYEVVEDGIHIYAPAKTDYFVN-------PADGKVVTDAPFFYKEVEGD 54 Query: 77 FVMRVKVQHDFKDIYDSASVMVMKDINVWAKLCFELTDFNTHAVVSVVTNPLSDDANGNN 136 FV+R KV HDF YD+ ++ +++ +WAK CFE TD TH+VV+V+TN SDDANG + Sbjct: 55 FVLRAKVSHDFVSTYDACVLLALENEKLWAKACFEYTDLGTHSVVTVMTNERSDDANGVD 114 Query: 137 IDSNSVWLQITRVGQSFAFHYSLTGTQFYMARFFNLPVEETVKVGFVPQAPTGKGGDRIY 196 +D + VWLQ++R FA HYS G +F MAR NLP+++ +KVG Q+PTG GG R + Sbjct: 115 VDGDEVWLQLSRKDNLFAIHYSQDGKEFKMARLCNLPMQKKIKVGLEAQSPTGDGGSRRF 174 Query: 197 SNFSLENKTVKNIRAG 212 SN SLE +++++IR G Sbjct: 175 SNVSLELRSLEDIRKG 190 >A9KPR7.1 A9KPR7_CLOPH Putative uncharacterized protein Length = 151 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 75/150 (50%), Positives = 108/150 (72%) Query: 63 LANAPFFFTEVSGDFVMRVKVQHDFKDIYDSASVMVMKDINVWAKLCFELTDFNTHAVVS 122 + +APFF+ EV GDF++R KV HDF YD+ ++ +++ +WAK CFE TD TH+VV+ Sbjct: 1 MTDAPFFYKEVEGDFILRAKVSHDFVSTYDACVLLALENEKLWAKACFEYTDLGTHSVVT 60 Query: 123 VVTNPLSDDANGNNIDSNSVWLQITRVGQSFAFHYSLTGTQFYMARFFNLPVEETVKVGF 182 V+TN SDDANG ++D + VWLQ++R FA HYSL G +F MAR +LP+++ +KVG Sbjct: 61 VMTNERSDDANGVDVDGDEVWLQLSRKDNLFAIHYSLDGKEFKMARLCHLPMQKKIKVGL 120 Query: 183 VPQAPTGKGGDRIYSNFSLENKTVKNIRAG 212 Q+PTG GG R +SN SLE +++++IR G Sbjct: 121 EAQSPTGDGGSRRFSNVSLELRSLEDIRNG 150 >C1YMX5.1 C1YMX5_NOCDA Uncharacterized conserved protein Length = 207 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 80/138 (57%) Query: 75 GDFVMRVKVQHDFKDIYDSASVMVMKDINVWAKLCFELTDFNTHAVVSVVTNPLSDDANG 134 GDF +V DF +D+ +++ D W KLCFE + VVSVVT +SDDANG Sbjct: 69 GDFQFSARVTVDFASAFDAGVLLLWIDDRHWGKLCFEYSPDREPMVVSVVTRGVSDDANG 128 Query: 135 NNIDSNSVWLQITRVGQSFAFHYSLTGTQFYMARFFNLPVEETVKVGFVPQAPTGKGGDR 194 ++ +VWL+++R+G++FA+H SL GT + M RFF + + ++GF Q+PTG G Sbjct: 129 FTVEGRTVWLRVSRIGRTFAYHASLDGTAWRMIRFFAIDDAASARIGFEAQSPTGDGCAV 188 Query: 195 IYSNFSLENKTVKNIRAG 212 + + + + +R G Sbjct: 189 TFDHIRFTGERLAELRDG 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,376,960,437 Number of extensions: 55516761 Number of successful extensions: 115588 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 115586 Number of HSP's successfully gapped: 66 Length of query: 213 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 83 Effective length of database: 1,835,964,253 Effective search space: 152385032999 Effective search space used: 152385032999 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)