BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0100.p
         (63 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B0TA29.1 B0TA29_HELMI ATP-dependent helicase hrpb                      53   8e-06

>B0TA29.1 B0TA29_HELMI ATP-dependent helicase hrpb
          Length = 874

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 1   VRTVIDTGLRRTQVFSPRTGMPRLTTVPVSKASADQ 36
           +R V+D+GL R   FSPRTGM RL TVPVS+ASADQ
Sbjct: 287 IRVVVDSGLMRVPRFSPRTGMSRLETVPVSRASADQ 322


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 331,528,323
Number of extensions: 9093886
Number of successful extensions: 14652
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14652
Number of HSP's successfully gapped: 2
Length of query: 63
Length of database: 3,060,696,203
Length adjustment: 35
Effective length of query: 28
Effective length of database: 2,730,960,678
Effective search space: 76466898984
Effective search space used: 76466898984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)