BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0098.p
         (146 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIR3.1 B3KIR3_9BACI Putative uncharacterized protein                109   7e-23
C2ZJ84.1 C2ZJ84_BACCE Putative uncharacterized protein                106   7e-22
C2Z2L3.1 C2Z2L3_BACCE Putative uncharacterized protein                106   7e-22
C3J3P8.1 C3J3P8_9BACI Putative uncharacterized protein                106   8e-22
B7Y9D6.1 B7Y9D6_9BACI Putative uncharacterized protein                106   8e-22

>B3KIR3.1 B3KIR3_9BACI Putative uncharacterized protein
          Length = 126

 Score =  109 bits (273), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 84/131 (64%), Gaps = 5/131 (3%)

Query: 16  MSILSWLAEQRIQEAMRSGEFDKLPGHGKPLELEDLSGVPEELRMSFKIMKNAGLLPEEI 75
           MSI S LAEQ+I+EA+R+GEFD LP  GK L ++DLS +PE+LRMS++IMKNAG +PEE+
Sbjct: 1   MSIFSRLAEQKIEEAIRNGEFDNLPLAGKKLPIDDLSHIPEDLRMSYRIMKNAGYVPEEV 60

Query: 76  TLRKECVTLEKMLAVCHSSGTAADSDXXXXXXXXXXXXXXXQELMRQRGFENSSAFSGYG 135
           TLRKECV L  +L    + G     +               Q L+ QRG   +SAF+ Y 
Sbjct: 61  TLRKECVQLYDLLGATRNEG-----EQEQLKRKLNEKHLRLQLLLEQRGLSGNSAFTQYE 115

Query: 136 DKIQAQLTREE 146
            K++ +LT +E
Sbjct: 116 SKVRERLTGKE 126


>C2ZJ84.1 C2ZJ84_BACCE Putative uncharacterized protein
          Length = 123

 Score =  106 bits (265), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 83/127 (65%), Gaps = 5/127 (3%)

Query: 16  MSILSWLAEQRIQEAMRSGEFDKLPGHGKPLELEDLSGVPEELRMSFKIMKNAGLLPEEI 75
           M +   +AE++I++A+R+G+ D +PG GKPL+LEDLS VP ELRMS+KI+KNAG++P E+
Sbjct: 1   MDVFLNIAEEKIRQAIRNGDLDNIPGQGKPLQLEDLSMVPPELRMSYKILKNAGMIPPEM 60

Query: 76  TLRKECVTLEKMLAVCHSSGTAADSDXXXXXXXXXXXXXXXQELMRQRGFENSSAFSGYG 135
            L+K+ + +E ++A C+      +++               Q++M +R  ++SSAF  Y 
Sbjct: 61  ELQKDILKIEDLIACCYD-----EAERKKLQEELTAKTLRFQQVMEKRKIKDSSAFRMYQ 115

Query: 136 DKIQAQL 142
           DK+  +L
Sbjct: 116 DKVFRKL 122


>C2Z2L3.1 C2Z2L3_BACCE Putative uncharacterized protein
          Length = 123

 Score =  106 bits (265), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 83/127 (65%), Gaps = 5/127 (3%)

Query: 16  MSILSWLAEQRIQEAMRSGEFDKLPGHGKPLELEDLSGVPEELRMSFKIMKNAGLLPEEI 75
           M +   +AE++I++A+R+G+ D +PG GKPL+LEDLS VP ELRMS+KI+KNAG++P E+
Sbjct: 1   MDVFLNIAEEKIRQAIRNGDLDNIPGQGKPLQLEDLSMVPPELRMSYKILKNAGMIPPEM 60

Query: 76  TLRKECVTLEKMLAVCHSSGTAADSDXXXXXXXXXXXXXXXQELMRQRGFENSSAFSGYG 135
            L+K+ + +E ++A C+      +++               Q++M +R  ++SSAF  Y 
Sbjct: 61  ELQKDILKIEDLIACCYD-----EAERKKLQEELTAKTLRFQQVMEKRKIKDSSAFRMYQ 115

Query: 136 DKIQAQL 142
           DK+  +L
Sbjct: 116 DKVFRKL 122


>C3J3P8.1 C3J3P8_9BACI Putative uncharacterized protein
          Length = 123

 Score =  106 bits (264), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 6/123 (4%)

Query: 21  W-LAEQRIQEAMRSGEFDKLPGHGKPLELEDLSGVPEELRMSFKIMKNAGLLPEEITLRK 79
           W +AE++I+EAM++GEFD LPG GKPLE+EDLS +PEELR+ + ++KNAG + EE  LRK
Sbjct: 5   WRIAEEKIREAMKNGEFDNLPGFGKPLEIEDLSRIPEELRLGYLLLKNAGYVREEAELRK 64

Query: 80  ECVTLEKMLAVCHSSGTAADSDXXXXXXXXXXXXXXXQELMRQRGFENSSAFSGYGDKIQ 139
           E +TLE +L  C       D +                ELM++RG  NS A   YG +I+
Sbjct: 65  ELLTLEDLLRCCED-----DEEKRELEKKRTEKQLRLAELMKKRGQTNSKALRDYGRRIE 119

Query: 140 AQL 142
            + 
Sbjct: 120 EKF 122


>B7Y9D6.1 B7Y9D6_9BACI Putative uncharacterized protein
          Length = 123

 Score =  106 bits (264), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 6/123 (4%)

Query: 21  W-LAEQRIQEAMRSGEFDKLPGHGKPLELEDLSGVPEELRMSFKIMKNAGLLPEEITLRK 79
           W +AE++I+EAM++GEFD LPG GKPLE+EDLS +PEELR+ + ++KNAG + EE  LRK
Sbjct: 5   WRIAEEKIREAMKNGEFDNLPGFGKPLEIEDLSRIPEELRLGYLLLKNAGYVREEAELRK 64

Query: 80  ECVTLEKMLAVCHSSGTAADSDXXXXXXXXXXXXXXXQELMRQRGFENSSAFSGYGDKIQ 139
           E +TLE +L  C       D +                ELM++RG  NS A   YG +I+
Sbjct: 65  ELLTLEDLLRCCED-----DEEKRELEKKRTEKQLRLAELMKKRGQTNSKALRDYGRRIE 119

Query: 140 AQL 142
            + 
Sbjct: 120 EKF 122


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 765,887,661
Number of extensions: 26820785
Number of successful extensions: 41723
Number of sequences better than 1.0e-05: 264
Number of HSP's gapped: 41747
Number of HSP's successfully gapped: 264
Length of query: 146
Length of database: 3,060,696,203
Length adjustment: 109
Effective length of query: 37
Effective length of database: 2,033,805,568
Effective search space: 75250806016
Effective search space used: 75250806016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)