BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0097.p
         (125 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D7U1.1 B1D7U1_9BACL Putative uncharacterized protein                107   5e-22
A9ENK3.1 A9ENK3_SORC5 Transcriptional regulator, ArsR family          100   4e-20
C0Z5K5.1 C0Z5K5_BREBN Putative uncharacterized protein                 99   1e-19
B3KIY5.1 B3KIY5_9BACI LuxR family transcriptional regulator            96   1e-18
B1HT56.1 B1HT56_LYSSC LuxR family transcriptional regulator            89   1e-16

>B1D7U1.1 B1D7U1_9BACL Putative uncharacterized protein
          Length = 128

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 76/124 (61%)

Query: 1   MEKSKRKELAYNYAHSHRPMGVYRIVNTRNDKVFVGSSINLDGVWNKHKFMLDIGNHENK 60
           MEK +++EL   YA + R MGVY+I NT NDK+ V  S++LDG  N+  FM     +   
Sbjct: 1   MEKQRKRELGTAYAQTFRRMGVYQIRNTENDKILVLGSMDLDGAKNRLAFMQQTNMNTVF 60

Query: 61  ALQADWKEFGEQAFVFEILERIKPEEDFVAEVSELAKYRKLLPDLENKWLEQLSPYGERG 120
            LQ DW ++G   F FE L+ IKP E+ V + SEL KY+  +  L   W+E+L PY E+G
Sbjct: 61  ELQQDWNKYGGSCFAFEELDSIKPREENVTDRSELKKYQAEVDALLELWIEKLQPYEEKG 120

Query: 121 YLKK 124
           Y ++
Sbjct: 121 YNRR 124


>A9ENK3.1 A9ENK3_SORC5 Transcriptional regulator, ArsR family
          Length = 346

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 6/116 (5%)

Query: 6   RKELAYNYAHSHRPMGVYRIVNTRNDKVFVGSSINLDGVWNKHKFMLDIGNHENKALQAD 65
           RKE+   Y  + +  G++++ NT N KV +GSS NL G  NKH+F L IG H+N+ALQ D
Sbjct: 229 RKEMKRKYLETPKQAGIFQVKNTVNGKVLLGSSTNLHGPLNKHRFALSIGAHQNQALQRD 288

Query: 66  WKEFGEQAFVFEILERIKPEEDFVAEVSELAKYRKLLPDLENKWLEQLSPYGERGY 121
           W++ G  AF FE+LE ++ +++    V++       L  LE  WLE+LSP   RGY
Sbjct: 289 WQQHGADAFTFEVLEVVQQKDEPGFSVAD------ELTLLEQIWLERLSPLAPRGY 338


>C0Z5K5.1 C0Z5K5_BREBN Putative uncharacterized protein
          Length = 119

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 9/121 (7%)

Query: 6   RKELAYNYAHSHRPMGVYRIVNTRNDKVFVGSSINLDGVWNKHKFMLDIGNHENKALQAD 65
           R+EL   Y  S    GVY+I NT N KV++ ++ NL  + N   F L +G+H NK LQ +
Sbjct: 3   REELKQLYKESETEAGVYQIKNTHNQKVWISATRNLKTM-NGKLFTLKMGSHINKQLQQE 61

Query: 66  WKEFGEQAFVFEILERIKPEED-FVAEVSELAKYRKLLPDLENKWLEQLSPYGERGYLKK 124
           W E+GE+AFVFE+LE +K ++D F  E   L K       LE KWL+QL PYGERGY ++
Sbjct: 62  WNEYGEEAFVFEVLEVLKKKKDGFFDEKDALKK-------LEQKWLDQLQPYGERGYHQE 114

Query: 125 K 125
           K
Sbjct: 115 K 115


>B3KIY5.1 B3KIY5_9BACI LuxR family transcriptional regulator
          Length = 117

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 7/118 (5%)

Query: 4   SKRKELAYNYAHSHRPMGVYRIVNTRNDKVFVGSSINLDGVWNKHKFMLDIGNHENKALQ 63
           ++R+EL   Y       GVY+I NT+N K+FV  + NL    N  +F L +G   NK LQ
Sbjct: 2   NRRQELNQMYKEIKIEAGVYQIRNTKNGKIFVAGTNNLK-TMNGKRFELQMGTSYNKPLQ 60

Query: 64  ADWKEFGEQAFVFEILERIKPEEDFVAEVSELAKYRKLLPDLENKWLEQLSPYGERGY 121
            DWKEFGE AFVFEILE+I+P+ED   ++      R      E  W+E+L P+GE+GY
Sbjct: 61  QDWKEFGEDAFVFEILEKIEPKEDPFFDLKGAVSKR------EAYWIERLEPFGEKGY 112


>B1HT56.1 B1HT56_LYSSC LuxR family transcriptional regulator
          Length = 115

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 7/121 (5%)

Query: 1   MEKSKRKELAYNYAHSHRPMGVYRIVNTRNDKVFVGSSINLDGVWNKHKFMLDIGNHENK 60
           M+   +KEL   Y       GV+ + NT+ DKVFVGS  NL  + N  +FML    H NK
Sbjct: 1   MKMDHKKELKEMYKDMKIEAGVFTMTNTQTDKVFVGSFNNLKRL-NGFQFMLKTNTHTNK 59

Query: 61  ALQADWKEFGEQAFVFEILERIKPEEDFVAEVSELAKYRKLLPDLENKWLEQLSPYGERG 120
            LQAD+  FG+ AF  +I+E +K +E+   +       +K L  LE KWL+ L+PYGERG
Sbjct: 60  ELQADYNSFGQDAFEVKIVEYLKKKEEGYFDA------KKELEKLEQKWLDTLNPYGERG 113

Query: 121 Y 121
           Y
Sbjct: 114 Y 114


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 786,359,359
Number of extensions: 29285933
Number of successful extensions: 72342
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 72313
Number of HSP's successfully gapped: 51
Length of query: 125
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 34
Effective length of database: 2,203,383,838
Effective search space: 74915050492
Effective search space used: 74915050492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)