BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0096.p (269 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2SIC8.1 C2SIC8_BACCE Transcriptional regulator 295 3e-78 C2Q4C1.1 C2Q4C1_BACCE Transcriptional regulator 294 6e-78 C3A495.1 C3A495_BACMY Transcriptional regulator 293 8e-78 A9VPG9.1 A9VPG9_BACWK Transcriptional regulator 293 9e-78 C2XSB3.1 C2XSB3_BACCE Transcriptional regulator 292 2e-77 >C2SIC8.1 C2SIC8_BACCE Transcriptional regulator Length = 257 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 141/254 (55%), Positives = 183/254 (72%), Gaps = 2/254 (0%) Query: 16 SISEKFWNASISELKQGYRFEMREHSGFYTCLVCGEEFEKGLIYKEDSRYYEAGKYAALH 75 ISEKFW+ASI ELK+GY F+ E + Y CL CGE F KG+IY+E+ YEA K+ LH Sbjct: 6 DISEKFWDASIEELKKGYVFD--EEAEEYVCLACGETFIKGVIYQENQVLYEAEKFVQLH 63 Query: 76 VEQVHGGMFKWXXXXXXXXXXXXXXQKGLLNAFRHSLSDGDAAKELGIGSTSTVRNHRFT 135 ++ H MF++ QK ++ F L+D + KE+ GSTST+RNHRFT Sbjct: 64 IQNEHTSMFEYLLNLDKKFTGLTDLQKKMVQFFHMGLNDKEIVKEMDGGSTSTIRNHRFT 123 Query: 136 LREKVKQAKLFLAVMELAEEKPGASSPFVSIPRSAVMVDERFAITEEENAEILSAYFKQG 195 LREK+KQAK+FLA+MEL+EEK + FV I R+A MVD+R+ ITEEENAE+L+A+F +G Sbjct: 124 LREKMKQAKVFLALMELSEEKSKVQTKFVPIHRTATMVDDRYNITEEENAEVLTAHFTEG 183 Query: 196 PEGPLSEFPKKQKRKAAILRQLIKRFETGRQYTEKEVNAILKEASSDYVTLRRYLIDYGL 255 +GPLS+FPKKQKRK ILR L+K+F++ ++YTEKEVN +L+ D+VTLRRYLI+YG Sbjct: 184 LDGPLSKFPKKQKRKLIILRHLVKKFDSNKKYTEKEVNTVLENIYPDFVTLRRYLIEYGF 243 Query: 256 LDREPDGSTYWVKL 269 LDR DGS YWVKL Sbjct: 244 LDRTADGSQYWVKL 257 >C2Q4C1.1 C2Q4C1_BACCE Transcriptional regulator Length = 257 Score = 294 bits (752), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 140/254 (55%), Positives = 182/254 (71%), Gaps = 2/254 (0%) Query: 16 SISEKFWNASISELKQGYRFEMREHSGFYTCLVCGEEFEKGLIYKEDSRYYEAGKYAALH 75 ISEKFW+ASI ELK+GY F+ E + Y CL CGE F KG+IY+E+ YEA K+ LH Sbjct: 6 DISEKFWDASIEELKKGYVFD--EEAEAYVCLACGETFIKGVIYQENQVLYEAEKFVQLH 63 Query: 76 VEQVHGGMFKWXXXXXXXXXXXXXXQKGLLNAFRHSLSDGDAAKELGIGSTSTVRNHRFT 135 ++ H MF++ QK ++ F L+D + KE+ GSTST+RNHRFT Sbjct: 64 IQNEHTSMFEYLLNLDKKFTGLTDLQKKMVQFFHMGLNDKEIVKEMDGGSTSTIRNHRFT 123 Query: 136 LREKVKQAKLFLAVMELAEEKPGASSPFVSIPRSAVMVDERFAITEEENAEILSAYFKQG 195 LREK+KQAK+FLA+MEL+EEK + FV I R+A MVD+R+ ITEEENAE+L+ +F +G Sbjct: 124 LREKMKQAKVFLALMELSEEKSKVQTKFVPIHRTATMVDDRYNITEEENAEVLTVHFTEG 183 Query: 196 PEGPLSEFPKKQKRKAAILRQLIKRFETGRQYTEKEVNAILKEASSDYVTLRRYLIDYGL 255 +GPLS+FPKKQKRK ILR L+K+F++ ++YTEKEVN +L+ D+VTLRRYLI+YG Sbjct: 184 LDGPLSKFPKKQKRKLIILRHLVKKFDSNKKYTEKEVNTVLENIYPDFVTLRRYLIEYGF 243 Query: 256 LDREPDGSTYWVKL 269 LDR DGS YWVKL Sbjct: 244 LDRTADGSQYWVKL 257 >C3A495.1 C3A495_BACMY Transcriptional regulator Length = 257 Score = 293 bits (751), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 140/254 (55%), Positives = 182/254 (71%), Gaps = 2/254 (0%) Query: 16 SISEKFWNASISELKQGYRFEMREHSGFYTCLVCGEEFEKGLIYKEDSRYYEAGKYAALH 75 ISEKFW+ASI ELK+GY F+ E + Y CL CGE F KG+IY+E+ YEA K+ LH Sbjct: 6 DISEKFWDASIEELKKGYVFD--EEAEEYVCLACGETFIKGVIYQENQVLYEAEKFVQLH 63 Query: 76 VEQVHGGMFKWXXXXXXXXXXXXXXQKGLLNAFRHSLSDGDAAKELGIGSTSTVRNHRFT 135 ++ H MF++ QK ++ F L+D + KE+ GSTST+RNHRFT Sbjct: 64 IQNEHTSMFEYLLNLDKKFTGLTDLQKKMVQFFHMGLNDKEIVKEMDGGSTSTIRNHRFT 123 Query: 136 LREKVKQAKLFLAVMELAEEKPGASSPFVSIPRSAVMVDERFAITEEENAEILSAYFKQG 195 LREK+KQAK+FLA+MEL+EEK + FV I R+A MVD+R+ ITEEENAE+L+ +F +G Sbjct: 124 LREKMKQAKVFLALMELSEEKSKVQTKFVPIHRTATMVDDRYNITEEENAEVLTVHFTEG 183 Query: 196 PEGPLSEFPKKQKRKAAILRQLIKRFETGRQYTEKEVNAILKEASSDYVTLRRYLIDYGL 255 +GPLS+FPKKQKRK ILR L+K+F++ ++YTEKEVN +L+ D+VTLRRYLI+YG Sbjct: 184 LDGPLSKFPKKQKRKLIILRHLVKKFDSNKKYTEKEVNTVLENIYPDFVTLRRYLIEYGF 243 Query: 256 LDREPDGSTYWVKL 269 LDR DGS YWVKL Sbjct: 244 LDRTADGSQYWVKL 257 >A9VPG9.1 A9VPG9_BACWK Transcriptional regulator Length = 254 Score = 293 bits (751), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 140/254 (55%), Positives = 182/254 (71%), Gaps = 2/254 (0%) Query: 16 SISEKFWNASISELKQGYRFEMREHSGFYTCLVCGEEFEKGLIYKEDSRYYEAGKYAALH 75 ISEKFW+ASI ELK+GY F+ E + Y CL CGE F KG+IY+E+ YEA K+ LH Sbjct: 3 DISEKFWDASIEELKKGYVFD--EEAEEYVCLACGETFIKGVIYQENQVLYEAEKFVQLH 60 Query: 76 VEQVHGGMFKWXXXXXXXXXXXXXXQKGLLNAFRHSLSDGDAAKELGIGSTSTVRNHRFT 135 ++ H MF++ QK ++ F L+D + KE+ GSTST+RNHRFT Sbjct: 61 IQNEHTSMFEYLLNLDKKFTGLTDLQKKMVQFFHMGLNDKEIVKEMDGGSTSTIRNHRFT 120 Query: 136 LREKVKQAKLFLAVMELAEEKPGASSPFVSIPRSAVMVDERFAITEEENAEILSAYFKQG 195 LREK+KQAK+FLA+MEL+EEK + FV I R+A MVD+R+ ITEEENAE+L+ +F +G Sbjct: 121 LREKMKQAKVFLALMELSEEKSKVQTKFVPIHRTATMVDDRYNITEEENAEVLTVHFTEG 180 Query: 196 PEGPLSEFPKKQKRKAAILRQLIKRFETGRQYTEKEVNAILKEASSDYVTLRRYLIDYGL 255 +GPLS+FPKKQKRK ILR L+K+F++ ++YTEKEVN +L+ D+VTLRRYLI+YG Sbjct: 181 LDGPLSKFPKKQKRKLIILRHLVKKFDSNKKYTEKEVNTVLENIYPDFVTLRRYLIEYGF 240 Query: 256 LDREPDGSTYWVKL 269 LDR DGS YWVKL Sbjct: 241 LDRTADGSQYWVKL 254 >C2XSB3.1 C2XSB3_BACCE Transcriptional regulator Length = 254 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 140/253 (55%), Positives = 183/253 (72%), Gaps = 2/253 (0%) Query: 17 ISEKFWNASISELKQGYRFEMREHSGFYTCLVCGEEFEKGLIYKEDSRYYEAGKYAALHV 76 ISEKFW+AS+ ELK+GY F+ E + Y CL CGE F KG+IY+E+ YEA K+ LH+ Sbjct: 4 ISEKFWDASVEELKKGYVFD--EVAEEYICLACGETFIKGVIYQENQVLYEAEKFVQLHI 61 Query: 77 EQVHGGMFKWXXXXXXXXXXXXXXQKGLLNAFRHSLSDGDAAKELGIGSTSTVRNHRFTL 136 + H MF++ QK ++ F L+D + KE+ GSTST+RNHRFTL Sbjct: 62 QNEHTSMFEYLLNLDKKFTGLTDLQKKMVQFFHMGLNDKEIVKEMDGGSTSTIRNHRFTL 121 Query: 137 REKVKQAKLFLAVMELAEEKPGASSPFVSIPRSAVMVDERFAITEEENAEILSAYFKQGP 196 REK+KQAK+FLA+MEL+EEK + FV I R+A MVD+R+ ITEEENAE+L+A+F +G Sbjct: 122 REKMKQAKVFLALMELSEEKSKVQTKFVPIHRTATMVDDRYNITEEENAEVLTAHFTEGL 181 Query: 197 EGPLSEFPKKQKRKAAILRQLIKRFETGRQYTEKEVNAILKEASSDYVTLRRYLIDYGLL 256 +GPLS+FPKKQKRK ILR L+K+F++ ++YTEKEVN +L+ D+VTLRRYLI+YG L Sbjct: 182 DGPLSKFPKKQKRKLIILRHLVKKFDSNKKYTEKEVNTVLENIYPDFVTLRRYLIEYGFL 241 Query: 257 DREPDGSTYWVKL 269 DR DGS YWVKL Sbjct: 242 DRTADGSQYWVKL 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,480,437,823 Number of extensions: 53585736 Number of successful extensions: 138999 Number of sequences better than 1.0e-05: 207 Number of HSP's gapped: 138862 Number of HSP's successfully gapped: 207 Length of query: 269 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 136 Effective length of database: 1,807,701,208 Effective search space: 245847364288 Effective search space used: 245847364288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)