BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0089.p (317 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDG5.1 B1DDG5_9BACL Putative uncharacterized protein 356 1e-96 B1DCF0.1 B1DCF0_9BACL Putative uncharacterized protein 197 1e-48 A4SFH4.1 A4SFH4_PROVI Putative uncharacterized protein 179 4e-43 A7NQF3.1 A7NQF3_ROSCS Putative uncharacterized protein 173 2e-41 A5UYD3.1 A5UYD3_ROSS1 Putative uncharacterized protein 169 3e-40 >B1DDG5.1 B1DDG5_9BACL Putative uncharacterized protein Length = 331 Score = 356 bits (914), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 180/331 (54%), Positives = 229/331 (69%), Gaps = 14/331 (4%) Query: 1 MLNRNAEALFWIGRYIERAENHARLIDVHYHIQQEEDFRAEGH-----------KWSRLI 49 MLNRNAEALFWIGRY+ERAENHARLIDVHYH+Q E++ E KW+R++ Sbjct: 1 MLNRNAEALFWIGRYMERAENHARLIDVHYHLQAEDELGVEACGQDGESKEVPCKWTRIV 60 Query: 50 DALGVRNEYQQQFDGFSEQDVLSFITLDLGNANSLFSCVHQARNNLRTLRQHLPSELWDI 109 DALG R+ Y+QQ+ ++EQDVL +ITLD NANSL SCV AR NLRTLR+ +PSELWD Sbjct: 61 DALGSRSAYEQQYGSYTEQDVLRYITLDRDNANSLVSCVSHARGNLRTLREKVPSELWDT 120 Query: 110 INSFNLWLGEQSVADILS-GPHQFYQQVKERAAMFLGAEQSVMLRGNEWRFIGSGRFLER 168 IN+F LWL E+ D++ PH FY +++E AAMF G QSVM R NEW FI GRFLER Sbjct: 121 INAFYLWLREKQPEDLMKESPHLFYGRIREWAAMFQGLCQSVMPRENEWHFIECGRFLER 180 Query: 169 AENTTRILQAVTVSCKSKDIN--AIYTQLQAVLKSVSGYQAFRRYYADAMSPESILEFLI 226 AENT RI++AV + N Y LQAVLKS+SG+Q+FRRYYAD MS ESI+EF+I Sbjct: 181 AENTLRIIKAVGNAAVGDGWNNAGAYPYLQAVLKSLSGHQSFRRYYADGMSVESIVEFVI 240 Query: 227 VNAYFPRSIRFSFHKLEEHLAKLRLDSSEKGSGHERVIRQAGKIKAELDYMEKEEMSGDL 286 +N FPRS+ FSFH L+EH+ ++ L + + H+R+IRQ K+KA+L +E E+M D Sbjct: 241 LNQSFPRSVHFSFHALDEHMKQIELSDKQLRTAHDRIIRQVAKVKADLACLEHEDMIVDR 300 Query: 287 VEDVLQSLMGSCQKLGRTMEGAFFRREGVSA 317 ++ L+ +CQ LG + FFR SA Sbjct: 301 NGSIVGHLLEACQMLGHSFAKTFFRMGEASA 331 >B1DCF0.1 B1DCF0_9BACL Putative uncharacterized protein Length = 320 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 103/253 (40%), Positives = 153/253 (60%), Gaps = 8/253 (3%) Query: 1 MLNRNAEALFWIGRYIERAENHARLIDVHYHIQQEEDFRAEGHKWSRLIDALGVRNEYQQ 60 M+NR AE LF IGR +ERA+N+AR+I+++Y ++ E EG+ W RL A+G E Sbjct: 1 MINRYAELLFLIGRCLERADNYARIINIYYSMRHELKETDEGYAWERLASAVGHTPELNN 60 Query: 61 QFDGFSEQDVLSFITLDLGNANSLFSCVHQARNNLRTLRQHLPSELWDIINSFNLWLGEQ 120 Q + E VL +T D N +S++S + Q RN++RTLR LP ELWDI+N+F LWL EQ Sbjct: 61 QAN---EWVVLHDLTFDRTNPDSIYSSIQQVRNHIRTLRPLLPGELWDIMNTFYLWLKEQ 117 Query: 121 SVADI-LSGPHQFYQQVKERAAMFLGAEQSVMLRGNEWRFIGSGRFLERAENTTRILQAV 179 V+ + L P+ FY+ + E+ A+F G + M+RG W FI +G+F+ER T I+ A Sbjct: 118 DVSKLMLQSPYLFYKHISEQLALFNGTADATMVRGQNWNFIQTGKFVERMNGTVGIIHAT 177 Query: 180 TVSC----KSKDINAIYTQLQAVLKSVSGYQAFRRYYADAMSPESILEFLIVNAYFPRSI 235 + K D Y + +LKS GY AFR+++A + + EFL++NA FPRS+ Sbjct: 178 YRNMQQDEKLLDEELRYNRFLVLLKSCGGYDAFRKFHAHHVRLTEVTEFLLLNAEFPRSV 237 Query: 236 RFSFHKLEEHLAK 248 RF + L ++ + Sbjct: 238 RFGINSLASYIER 250 >A4SFH4.1 A4SFH4_PROVI Putative uncharacterized protein Length = 370 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 175/322 (54%), Gaps = 15/322 (4%) Query: 1 MLNRNAEALFWIGRYIERAENHARLIDVHYHIQQEEDFRAEGHK---WSRLIDALGVRNE 57 ML+R AE+LFW+ RY+ERAEN AR +DV++++ + + W L A + Sbjct: 1 MLSRVAESLFWMSRYVERAENTARFLDVNFNLLLDLNRITPTENPDCWIALTVATSDPEK 60 Query: 58 YQQQFDGFSEQDVLSFITLDLGNANSLFSCVHQARNNLRTLRQHLPSELWDIINSFNLWL 117 ++ + +S + V ++ + N+NS+ SC+ AR N R++ + + SE+W+ IN+ L Sbjct: 61 FESLYGEYSARSVTDYLVFNRSNSNSIISCIGLARENARSIIESISSEMWEQINNLYHLL 120 Query: 118 GEQSVADILSGPHQFYQQVKERAAMFLGAEQSVMLRGNEWRFIGSGRFLERAENTTRILQ 177 ++ + P FY+++K + +F G + M R W FI ++LERA+N TR++ Sbjct: 121 QTMRPENVQNDPFSFYREIKNASHLFQGITDNTMARSQGWDFIQVAKYLERADNVTRLID 180 Query: 178 A----VTVSCKSKDINAIYT----QLQAVLKSVSGYQAFRRYYADAMSPESILEFLIVNA 229 +T + I I + Q AVLKS S +AF++ Y + PESILEFLI++ Sbjct: 181 VKYHMLTPQTSREAIGLISSVDIIQWMAVLKSCSALEAFKKVYLSRIKPESILEFLILDK 240 Query: 230 YFPRSIRFSFHKLEEHLAKLRLDSSEKG-SGHERVIRQAGKIKAELDYMEKEEMSGDLVE 288 FPRSI FS +E L +L +S++K S +R+I GK++AEL Y E++ + Sbjct: 241 TFPRSIHFSIGAAKEALWRLSGNSTQKNLSNSDRLI---GKMEAELSYTTVEDIMERGLH 297 Query: 289 DVLQSLMGSCQKLGRTMEGAFF 310 D L + QK G + +F Sbjct: 298 DYLGDIKQRLQKAGEQLHLVYF 319 >A7NQF3.1 A7NQF3_ROSCS Putative uncharacterized protein Length = 319 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 162/288 (56%), Gaps = 8/288 (2%) Query: 1 MLNRNAEALFWIGRYIERAENHARLIDVHYHIQQEEDFRAEGHKWSRLIDALGVRNEYQQ 60 ML+R A++LFW+ RY+ERAE+ ARL+DVH H + A +W RL+ AL Q Sbjct: 6 MLSRVADSLFWMARYLERAEHTARLLDVHLHSALDLTPAAAERRWRRLLAALHGPLAAQ- 64 Query: 61 QFDGFSEQDVLSFITLDLGNANSLFSCVHQARNNLRTLRQHLPSELWDIINSFNLWLGEQ 120 S + T D ++S+ +CV AR N R +R+ + SE+W+ +N L+L Sbjct: 65 ---SVSPYAITQAYTFDTTTSDSIMACVTAARENARQVRERISSEMWEQVNRLYLYLRTT 121 Query: 121 SVADILSG-PHQFYQQVKERAAMFLGAEQSVMLRGNEWRFIGSGRFLERAENTTRILQAV 179 S+ ++ SG PH F++ VKE +F G + + W FI GR+LERA T +L Sbjct: 122 SMDEMWSGEPHLFFRAVKEGVHLFQGITDATLSHDEGWWFIQIGRYLERAMATAALLDVH 181 Query: 180 TVSCKSKDINAI-YTQLQAVLKSVSGYQAFRRYYADAMSPESILEFLIVNAYFPRSIRFS 238 + + D ++ Y + ++LKS + ++A+ + Y ++ PE + EFL++NA FPRSIRF+ Sbjct: 182 FGALDASDAASLDYFEWVSLLKSCTAFEAYCKVYTASVHPEDVAEFLLLNAEFPRSIRFA 241 Query: 239 FHKLEEHLAKLRLDSSEKGSGHERVIRQAGKIKAELDYMEKEEMSGDL 286 ++E + S + + RV R AG+++A LDY + +E+ D+ Sbjct: 242 ADMIQEAAQVIGRSSVPRATA--RVERLAGRLRAALDYGQVDEIMMDM 287 >A5UYD3.1 A5UYD3_ROSS1 Putative uncharacterized protein Length = 324 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 162/288 (56%), Gaps = 8/288 (2%) Query: 1 MLNRNAEALFWIGRYIERAENHARLIDVHYHIQQEEDFRAEGHKWSRLIDALGVRNEYQQ 60 ML+R A++LFW+ RY+ERAE+ ARL+DVH H D + L + + Q Sbjct: 6 MLSRVADSLFWMARYLERAEHTARLLDVHLH--SALDLTPTAAERRWRRLLLALHS--QP 61 Query: 61 QFDGFSEQDVLSFITLDLGNANSLFSCVHQARNNLRTLRQHLPSELWDIINSFNLWLGEQ 120 G + + +T D+ N++S+ +C+ AR+N R +R+ + SE+W+ +N L + Sbjct: 62 PAAGVTPYAITQALTFDMSNSDSIAACITTARDNARQVRERISSEMWEQVNRLYLQIRHT 121 Query: 121 SVADILSG-PHQFYQQVKERAAMFLGAEQSVMLRGNEWRFIGSGRFLERAENTTRILQAV 179 S+ ++ SG PH F++ VKE +F G + + W FI GR+LERA T +L Sbjct: 122 SMEEMWSGEPHLFFRSVKEGVHLFQGITDATLSHDEGWWFIQIGRYLERAMATAALLDVH 181 Query: 180 TVSCKSKDINAI-YTQLQAVLKSVSGYQAFRRYYADAMSPESILEFLIVNAYFPRSIRFS 238 S + D + Y + A+LKS + ++A+ + Y ++ PE + EFL++NA FPRSIRF+ Sbjct: 182 FCSLEGSDAEMLDYFEWVALLKSCTAFEAYCKVYTASIRPEDVAEFLLLNAEFPRSIRFA 241 Query: 239 FHKLEEHLAKLRLDSSEKGSGHERVIRQAGKIKAELDYMEKEEMSGDL 286 ++E + S+ + + RV R AG+++A LDY + +E+ D+ Sbjct: 242 ADMIQEAAQSIGRSSAHRATA--RVERLAGRLRAVLDYGQVDEIMTDM 287 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,761,678,976 Number of extensions: 68791666 Number of successful extensions: 185164 Number of sequences better than 1.0e-05: 436 Number of HSP's gapped: 183443 Number of HSP's successfully gapped: 436 Length of query: 317 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 182 Effective length of database: 1,788,859,178 Effective search space: 325572370396 Effective search space used: 325572370396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)