BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0085.p (332 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGJ9.1 B3KGJ9_9BACI Signal recognition particle-docking protei... 557 e-157 B1DME4.1 B1DME4_9BACL Signal recognition particle-docking protei... 517 e-145 C0ZFN8.1 C0ZFN8_BREBN Probable cell division protein FtsY 455 e-126 B9IVD6.1 B9IVD6_BACCQ Signal recognition particle-docking protei... 441 e-122 B7HLI0.1 B7HLI0_BACC7 Signal recognition particle-docking protei... 441 e-122 >B3KGJ9.1 B3KGJ9_9BACI Signal recognition particle-docking protein FtsY Length = 333 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 275/332 (82%), Positives = 300/332 (90%) Query: 1 MSFFRKLKESISGKTESVTKQFRDGLEKTRKGFVEKVSDLISRRKKIDXXXXXXXXXXXX 60 MSFF++LKESIS KTE+VTKQFRDGLEKTRKGF+EKVSDL+ RRKKID Sbjct: 1 MSFFKRLKESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILI 60 Query: 61 GADVGVNTVMTLVEELRAEVRQKRIEDASELQPILSRKLMELLRGDDDNSLRENPDGITV 120 GADVGVNTVM L+++LRAEV+++RIEDA++LQP+LS KLM LLR D N LRENPDGITV Sbjct: 61 GADVGVNTVMDLMDDLRAEVKKRRIEDAADLQPVLSEKLMGLLRDDSSNELRENPDGITV 120 Query: 121 ILFVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGQRAGVDVIKQQ 180 ILFVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWG+R GV+VIKQQ Sbjct: 121 ILFVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVEVIKQQ 180 Query: 181 AGSDPAAVMFDAVQAAKQRNVDVLICDTAGRLQNKSNLMEELNKIFRVIQREIPSAPHEV 240 GSDPAAVMFDAVQAAKQR DVL+CDTAGRLQNK+NLMEELNKIFRVIQREIPSAPHEV Sbjct: 181 PGSDPAAVMFDAVQAAKQRQADVLLCDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEV 240 Query: 241 LMVLDATTGQNALTQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQEMNLPVKLVGLGE 300 LMVLDATTGQNAL+QAKLFGEKSGVTGLVLTKLDGTAKGGIV+AIRQE+NLPVKLVGLGE Sbjct: 241 LMVLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGE 300 Query: 301 KMEDLQPFDSTQFVHALFAGMISAEEDNEKQE 332 KM DLQ FDS QFVHALFAG+I EE+ +Q+ Sbjct: 301 KMGDLQTFDSEQFVHALFAGLIKEEENAVEQQ 332 >B1DME4.1 B1DME4_9BACL Signal recognition particle-docking protein FtsY Length = 332 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 256/327 (78%), Positives = 285/327 (87%) Query: 1 MSFFRKLKESISGKTESVTKQFRDGLEKTRKGFVEKVSDLISRRKKIDXXXXXXXXXXXX 60 MSFF+KLKESI+ KTE+VT F++GL KTR VEKV +LI+RRKKID Sbjct: 1 MSFFKKLKESIASKTEAVTTIFKEGLTKTRVALVEKVEELITRRKKIDEEFYEELEEILI 60 Query: 61 GADVGVNTVMTLVEELRAEVRQKRIEDASELQPILSRKLMELLRGDDDNSLRENPDGITV 120 GADVGVNTVMTL++ELRAEV++++IE A+ELQPILS KL+ LL+G+ + L+ GITV Sbjct: 61 GADVGVNTVMTLIDELRAEVKKRKIEQAAELQPILSEKLIGLLKGEQNPGLQMAKSGITV 120 Query: 121 ILFVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGQRAGVDVIKQQ 180 ILFVGVNGVGKTTTIGKLAH++K EGK VLLAAGDTFRA AIEQLEVWGQR GVDVIKQQ Sbjct: 121 ILFVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAAAIEQLEVWGQRVGVDVIKQQ 180 Query: 181 AGSDPAAVMFDAVQAAKQRNVDVLICDTAGRLQNKSNLMEELNKIFRVIQREIPSAPHEV 240 +GSDPAAVMFDAVQAAKQR VDVL+CDTAGRLQNKSNLMEELNKIFRVIQREIP APHEV Sbjct: 181 SGSDPAAVMFDAVQAAKQRGVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEV 240 Query: 241 LMVLDATTGQNALTQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQEMNLPVKLVGLGE 300 L+VLDATTGQNAL+QAKLFGEKSGVTGLVLTKLDGTAKGGIV+AIR E+NLPVKLVGLGE Sbjct: 241 LLVLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRNELNLPVKLVGLGE 300 Query: 301 KMEDLQPFDSTQFVHALFAGMISAEED 327 KM DLQ FDS QFVHALFAG+I EE+ Sbjct: 301 KMTDLQEFDSVQFVHALFAGLIQREEE 327 >C0ZFN8.1 C0ZFN8_BREBN Probable cell division protein FtsY Length = 335 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 225/333 (67%), Positives = 271/333 (81%), Gaps = 2/333 (0%) Query: 1 MSFFRKLKESISGKTESVTKQFRDGLEKTRKGFVEKVSDLISRRKKIDXXXXXXXXXXXX 60 MSFF++L+++I K+E VT++F DGL KTR VEKV DL+ R KKID Sbjct: 1 MSFFKRLRDAIVQKSEEVTQKFTDGLAKTRDLLVEKVEDLVRRYKKIDDDFFDELEEILI 60 Query: 61 GADVGVNTVMTLVEELRAEVRQKRIEDASELQPILSRKLMELLRGDD--DNSLRENPDGI 118 +DVGVNTVM L+++LR EVR+++IE+A +LQPILS KL+ LL+ DD D +L + Sbjct: 61 TSDVGVNTVMELIDDLRIEVRKQKIENAIDLQPILSEKLVALLKNDDAADTALNVEDGRL 120 Query: 119 TVILFVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGQRAGVDVIK 178 VILFVGVNGVGKTTTIGK+AH +KQ+ KKVLLAAGDTFRA AIEQLEVWG+R GVDVIK Sbjct: 121 NVILFVGVNGVGKTTTIGKMAHMFKQQDKKVLLAAGDTFRAAAIEQLEVWGERVGVDVIK 180 Query: 179 QQAGSDPAAVMFDAVQAAKQRNVDVLICDTAGRLQNKSNLMEELNKIFRVIQREIPSAPH 238 QQ GSDPAAV++DA+QAAK R VDVL+CDTAGRLQNK NLMEEL K+ RV+QRE+P APH Sbjct: 181 QQQGSDPAAVIYDAIQAAKSRQVDVLLCDTAGRLQNKVNLMEELAKVHRVLQRELPGAPH 240 Query: 239 EVLMVLDATTGQNALTQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQEMNLPVKLVGL 298 EVL+VLDATTGQNAL+QAK FG+ +GVTGLVLTKLDGTAKGGIV+AIR E+N+PVK VGL Sbjct: 241 EVLLVLDATTGQNALSQAKTFGQSAGVTGLVLTKLDGTAKGGIVIAIRNELNIPVKYVGL 300 Query: 299 GEKMEDLQPFDSTQFVHALFAGMISAEEDNEKQ 331 GE+M+DLQ FD QFVHALFAG+I +E E++ Sbjct: 301 GERMDDLQQFDPEQFVHALFAGLIQKDETEEQE 333 >B9IVD6.1 B9IVD6_BACCQ Signal recognition particle-docking protein FtsY Length = 329 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/328 (64%), Positives = 268/328 (81%), Gaps = 2/328 (0%) Query: 1 MSFFRKLKESISGKTESVTKQFRDGLEKTRKGFVEKVSDLISRRKKIDXXXXXXXXXXXX 60 MSFF+KLKE IS +T++VT++F+ GLEKTR F +KV+DL+ R +K+D Sbjct: 1 MSFFKKLKEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILI 60 Query: 61 GADVGVNTVMTLVEELRAEVRQKRIEDASELQPILSRKLMELLRGDDD--NSLRENPDGI 118 GADVGV+TVM L+++L+ EV+++ I+D E+Q ++S KL+E+ +GD D N + E DG+ Sbjct: 61 GADVGVSTVMELIDQLKEEVQRRNIQDPKEVQAVISEKLIEIYKGDSDFTNEINEQKDGL 120 Query: 119 TVILFVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGQRAGVDVIK 178 TV+LFVGVNGVGKTTTIGK+AH++K EGK VLLAAGDTFRAGAIEQLEVWG R GV+VIK Sbjct: 121 TVVLFVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIK 180 Query: 179 QQAGSDPAAVMFDAVQAAKQRNVDVLICDTAGRLQNKSNLMEELNKIFRVIQREIPSAPH 238 Q +GSDPAAVM+DAVQAAK R VDVL+CDTAGRLQNK NLM+EL K+ RVI+RE+P APH Sbjct: 181 QGSGSDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPH 240 Query: 239 EVLMVLDATTGQNALTQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQEMNLPVKLVGL 298 EVL+V+DATTGQN L+QAK F E + VTG+VLTKLDGTAKGGIV+AIR EM++PVK VGL Sbjct: 241 EVLLVIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGL 300 Query: 299 GEKMEDLQPFDSTQFVHALFAGMISAEE 326 GE+M+DLQ FD Q+V+ LFA ++ EE Sbjct: 301 GEQMDDLQQFDPEQYVYGLFANLVETEE 328 >B7HLI0.1 B7HLI0_BACC7 Signal recognition particle-docking protein FtsY Length = 329 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/328 (64%), Positives = 268/328 (81%), Gaps = 2/328 (0%) Query: 1 MSFFRKLKESISGKTESVTKQFRDGLEKTRKGFVEKVSDLISRRKKIDXXXXXXXXXXXX 60 MSFF+KLKE IS +T++VT++F+ GLEKTR F +KV+DL+ R +K+D Sbjct: 1 MSFFKKLKEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILI 60 Query: 61 GADVGVNTVMTLVEELRAEVRQKRIEDASELQPILSRKLMELLRGDDD--NSLRENPDGI 118 GADVGV+TVM L+++L+ EV+++ I+D E+Q ++S KL+E+ +GD D N + E DG+ Sbjct: 61 GADVGVSTVMELIDQLKEEVQRRNIQDPKEVQAVISEKLIEIYKGDSDFTNEINEQKDGL 120 Query: 119 TVILFVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGQRAGVDVIK 178 TV+LFVGVNGVGKTTTIGK+AH++K EGK VLLAAGDTFRAGAIEQLEVWG R GV+VIK Sbjct: 121 TVVLFVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIK 180 Query: 179 QQAGSDPAAVMFDAVQAAKQRNVDVLICDTAGRLQNKSNLMEELNKIFRVIQREIPSAPH 238 Q +GSDPAAVM+DAVQAAK R VDVL+CDTAGRLQNK NLM+EL K+ RVI+RE+P APH Sbjct: 181 QGSGSDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPH 240 Query: 239 EVLMVLDATTGQNALTQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQEMNLPVKLVGL 298 EVL+V+DATTGQN L+QAK F E + VTG+VLTKLDGTAKGGIV+AIR EM++PVK VGL Sbjct: 241 EVLLVIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGL 300 Query: 299 GEKMEDLQPFDSTQFVHALFAGMISAEE 326 GE+M+DLQ FD Q+V+ LFA ++ EE Sbjct: 301 GEQMDDLQQFDPEQYVYGLFANLVETEE 328 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,706,594,154 Number of extensions: 66587108 Number of successful extensions: 306628 Number of sequences better than 1.0e-05: 4021 Number of HSP's gapped: 300575 Number of HSP's successfully gapped: 4022 Length of query: 332 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 196 Effective length of database: 1,779,438,163 Effective search space: 348769879948 Effective search space used: 348769879948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)