BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0084.p (442 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZFN9.1 C0ZFN9_BREBN Chromosome partition protein SMC 399 e-109 C5D8T7.1 C5D8T7_9BACI Chromosome segregation protein SMC 376 e-102 C3B6T1.1 C3B6T1_BACMY Chromosome partition protein smc 374 e-102 C3APE7.1 C3APE7_BACMY Chromosome partition protein smc 374 e-102 C3BNS4.1 C3BNS4_9BACI Chromosome partition protein smc 374 e-101 >C0ZFN9.1 C0ZFN9_BREBN Chromosome partition protein SMC Length = 1190 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 211/390 (54%), Positives = 270/390 (69%) Query: 47 IRSAESARKANESAKEELQSKLTGMKVTEGKLDQEIFSLEEQVRRMRQDAGSQDKELRQS 106 I AE+ R+ +KEE+ K+T +KV ++ QE S EQ R+ + E + Sbjct: 792 IAEAEAKRQEQLESKEEMNQKITSLKVLNAQVKQEYQSRLEQTERLLEQKTQLQHEWEEQ 851 Query: 107 RSLLITIEKDLEENTKEAVKQKEDLNSYRLKKDEXXXXXXXXXXXXXXXXXXXELAEGET 166 + L ++++ N ++ + ++ R KD E E + Sbjct: 852 NANLASLDELERTNESSGLELDQRISELRQDKDRVAGLIQERRSERATLFYKQEQVEQQV 911 Query: 167 KDQRQALKSVDDKLRSTEVAVGRLDVELDNILRKLSDDYELSYELAKQRYAVPEDVPAAQ 226 K+ R+ +KS+++KL EV V R +VELD++L KLS++YE+SY+LAKQ+Y ++ Sbjct: 912 KEIRREVKSLEEKLHQEEVKVNRNEVELDHLLNKLSEEYEMSYDLAKQKYPARGEIQEET 971 Query: 227 MEVQRLKRSISSLGEVNLGAIEEYQRVHERFTFLSGQKDDLVEAKTTLYHVIREMEEEMS 286 V RLK+ I +LG VNLGAIEEY+R+ ER FLS Q+ DL EAK LY VI+EM+ EMS Sbjct: 972 QVVNRLKKQIGALGTVNLGAIEEYERLSERQQFLSSQEADLNEAKDMLYQVIQEMDAEMS 1031 Query: 287 KRFKMTFDAIRREFGTVFTKLFGGGRADLMLLDPEHMLDTGIDIVAQPPGKKLQNLQLLS 346 +RFK TFDAI +F VF +LFGGGRADL+L +P+++L+TGIDIVAQPPGKKLQNL LLS Sbjct: 1032 RRFKETFDAISEQFRDVFVQLFGGGRADLVLSNPDNLLETGIDIVAQPPGKKLQNLALLS 1091 Query: 347 GGERALTAMALLFAILQVKPVPFCVLDEVEAALDEANVVRFAQYLREFSEQTQFIVVTHR 406 GGERALTAMALLFAIL+VKPVPFCVLDEVEAALDEANV RFA+Y+ FS QTQFI VTHR Sbjct: 1092 GGERALTAMALLFAILRVKPVPFCVLDEVEAALDEANVNRFAEYMHHFSNQTQFICVTHR 1151 Query: 407 KGTMEEADVLYGVTMEEGGVSKLVSVKLED 436 KGTME ADVLYG+TM+EGGVSKLVSVKLED Sbjct: 1152 KGTMESADVLYGITMQEGGVSKLVSVKLED 1181 >C5D8T7.1 C5D8T7_9BACI Chromosome segregation protein SMC Length = 1187 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/394 (50%), Positives = 275/394 (69%), Gaps = 8/394 (2%) Query: 47 IRSAESARKANESAKEELQSKLTGMKVTEGKLDQEIFSLEEQVRRMRQDAGSQDKELRQS 106 I + ++ ++ +++KE LQ+ +T K+ + Q + +++E+V + + +K+L+ S Sbjct: 791 IETLQAQKQTEQTSKEALQTAMTEQKIALAETQQRLKNVQEKVEQFHNELADTEKQLQAS 850 Query: 107 RSLLITIEKDLEENTKEAVKQKEDLNSYRLKKDEXXXXX----XXXXXXXXXXXXXXELA 162 + L ++ +EE + E+L R KK + E Sbjct: 851 KQELASL---IEEMNSSHFGE-EELEKMRQKKSQDKQKTIELIASRREQRLQYQTKLEHL 906 Query: 163 EGETKDQRQALKSVDDKLRSTEVAVGRLDVELDNILRKLSDDYELSYELAKQRYAVPEDV 222 E E K++++ K + D ++ EV + RLDVEL+N+L +L ++Y LS+E AK+ Y + DV Sbjct: 907 EREWKEKKRQHKQLADIVKDEEVKLNRLDVELENLLSRLREEYMLSFEAAKEAYPLTVDV 966 Query: 223 PAAQMEVQRLKRSISSLGEVNLGAIEEYQRVHERFTFLSGQKDDLVEAKTTLYHVIREME 282 A+ V+ +KR+I LG VNLGAI+EY+RV ER+ FL+ QK DL +AK TL+ VI EM+ Sbjct: 967 QEARKRVKLIKRAIDELGTVNLGAIDEYERVSERYQFLTEQKADLQQAKETLHQVIDEMD 1026 Query: 283 EEMSKRFKMTFDAIRREFGTVFTKLFGGGRADLMLLDPEHMLDTGIDIVAQPPGKKLQNL 342 +EM KRF TF+ IR FG VF +LFGGG ADL L +P+ +L+TGI+IVAQPPGKKLQNL Sbjct: 1027 QEMKKRFLSTFEHIRSHFGDVFRQLFGGGNADLRLTNPDDLLETGIEIVAQPPGKKLQNL 1086 Query: 343 QLLSGGERALTAMALLFAILQVKPVPFCVLDEVEAALDEANVVRFAQYLREFSEQTQFIV 402 LLSGGERALTA+ALLF+IL+V+PVPFCVLDEVEAALDEANV R+AQYL++FS+QTQFIV Sbjct: 1087 SLLSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVHRYAQYLKQFSDQTQFIV 1146 Query: 403 VTHRKGTMEEADVLYGVTMEEGGVSKLVSVKLED 436 +THRKGTMEEADVLYGVTM+E GVSKLVSV+LED Sbjct: 1147 ITHRKGTMEEADVLYGVTMQESGVSKLVSVRLED 1180 >C3B6T1.1 C3B6T1_BACMY Chromosome partition protein smc Length = 1189 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/384 (51%), Positives = 268/384 (69%) Query: 59 SAKEELQSKLTGMKVTEGKLDQEIFSLEEQVRRMRQDAGSQDKELRQSRSLLITIEKDLE 118 S+KE++Q+++T +KV + Q + + +E+V R+ ++ + L +++ L +++++ Sbjct: 804 SSKEKVQAEMTELKVQAAEKQQRLSNQKEKVDRLTKEQEETQRTLVKTKEDLAFLKQEMT 863 Query: 119 ENTKEAVKQKEDLNSYRLKKDEXXXXXXXXXXXXXXXXXXXELAEGETKDQRQALKSVDD 178 N+ + + +++ E E E KD + K V + Sbjct: 864 SNSSGEEQITNMIEKKAHDRNQTSELISSRREQRLSLQERVEHIEREVKDTKGRHKYVLE 923 Query: 179 KLRSTEVAVGRLDVELDNILRKLSDDYELSYELAKQRYAVPEDVPAAQMEVQRLKRSISS 238 L+ EV + RLDVEL+N L+ L + Y +S+E AK +Y + A+ +V+ +K SI Sbjct: 924 VLKDQEVKINRLDVELENRLQHLRETYTISFEAAKLKYTMIMPAEDARKKVKLIKLSIEE 983 Query: 239 LGEVNLGAIEEYQRVHERFTFLSGQKDDLVEAKTTLYHVIREMEEEMSKRFKMTFDAIRR 298 LG VNLGAIEEY+RV ER TFL Q+DDL EAK TL+ VI EM+EEM KRF TF AIR Sbjct: 984 LGTVNLGAIEEYERVAERHTFLLEQRDDLEEAKATLHQVIMEMDEEMKKRFSTTFQAIRT 1043 Query: 299 EFGTVFTKLFGGGRADLMLLDPEHMLDTGIDIVAQPPGKKLQNLQLLSGGERALTAMALL 358 EF TVF +LFGGGRADL++ +P+ +L+TGIDIVAQPPGKKLQNL LLSGGERALTA+ALL Sbjct: 1044 EFQTVFCELFGGGRADLVMTNPQDLLNTGIDIVAQPPGKKLQNLGLLSGGERALTAIALL 1103 Query: 359 FAILQVKPVPFCVLDEVEAALDEANVVRFAQYLREFSEQTQFIVVTHRKGTMEEADVLYG 418 F IL+V+PVPFCVLDEVEAALDEANV RFAQYL++FS++TQFIV+THRKGTMEE+DVLYG Sbjct: 1104 FGILKVRPVPFCVLDEVEAALDEANVARFAQYLKKFSDETQFIVITHRKGTMEESDVLYG 1163 Query: 419 VTMEEGGVSKLVSVKLEDEEAEIA 442 VTM+E GVSKLVSV+L+D E +A Sbjct: 1164 VTMQESGVSKLVSVRLDDGEELVA 1187 >C3APE7.1 C3APE7_BACMY Chromosome partition protein smc Length = 1189 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/384 (51%), Positives = 268/384 (69%) Query: 59 SAKEELQSKLTGMKVTEGKLDQEIFSLEEQVRRMRQDAGSQDKELRQSRSLLITIEKDLE 118 S+KE++Q+++T +KV + Q + + +E+V R+ ++ + L +++ L +++++ Sbjct: 804 SSKEKVQAEMTELKVQAAEKQQRLSNQKEKVDRLTKEQEETQRTLVKTKEDLAFLKQEMT 863 Query: 119 ENTKEAVKQKEDLNSYRLKKDEXXXXXXXXXXXXXXXXXXXELAEGETKDQRQALKSVDD 178 N+ + + +++ E E E KD + K V + Sbjct: 864 SNSSGEEQITNMIEKKAHDRNQTSELISSRREQRLSLQERVEHIEREVKDTKGRHKYVLE 923 Query: 179 KLRSTEVAVGRLDVELDNILRKLSDDYELSYELAKQRYAVPEDVPAAQMEVQRLKRSISS 238 L+ EV + RLDVEL+N L+ L + Y +S+E AK +Y + A+ +V+ +K SI Sbjct: 924 VLKDQEVKINRLDVELENRLQHLRETYTISFEAAKLKYTMIMPAEDARKKVKLIKLSIEE 983 Query: 239 LGEVNLGAIEEYQRVHERFTFLSGQKDDLVEAKTTLYHVIREMEEEMSKRFKMTFDAIRR 298 LG VNLGAIEEY+RV ER TFL Q+DDL EAK TL+ VI EM+EEM KRF TF AIR Sbjct: 984 LGTVNLGAIEEYERVAERHTFLLEQRDDLEEAKATLHQVIMEMDEEMKKRFSTTFQAIRT 1043 Query: 299 EFGTVFTKLFGGGRADLMLLDPEHMLDTGIDIVAQPPGKKLQNLQLLSGGERALTAMALL 358 EF TVF +LFGGGRADL++ +P+ +L+TGIDIVAQPPGKKLQNL LLSGGERALTA+ALL Sbjct: 1044 EFQTVFCELFGGGRADLVMTNPQDLLNTGIDIVAQPPGKKLQNLGLLSGGERALTAIALL 1103 Query: 359 FAILQVKPVPFCVLDEVEAALDEANVVRFAQYLREFSEQTQFIVVTHRKGTMEEADVLYG 418 F IL+V+PVPFCVLDEVEAALDEANV RFAQYL++FS++TQFIV+THRKGTMEE+DVLYG Sbjct: 1104 FGILKVRPVPFCVLDEVEAALDEANVARFAQYLKKFSDETQFIVITHRKGTMEESDVLYG 1163 Query: 419 VTMEEGGVSKLVSVKLEDEEAEIA 442 VTM+E GVSKLVSV+L+D E +A Sbjct: 1164 VTMQESGVSKLVSVRLDDGEELVA 1187 >C3BNS4.1 C3BNS4_9BACI Chromosome partition protein smc Length = 1189 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/384 (51%), Positives = 268/384 (69%) Query: 59 SAKEELQSKLTGMKVTEGKLDQEIFSLEEQVRRMRQDAGSQDKELRQSRSLLITIEKDLE 118 S+KE++Q+++T +KV + Q + + +E+V R+ ++ + L +++ L +++++ Sbjct: 804 SSKEKVQAEMTELKVQAAEKQQRLSNQKEKVDRLTKEQEETQRTLVKTKEDLAFLKQEMT 863 Query: 119 ENTKEAVKQKEDLNSYRLKKDEXXXXXXXXXXXXXXXXXXXELAEGETKDQRQALKSVDD 178 N+ + + +++ E E E KD + K V + Sbjct: 864 SNSSGEEQITNMIEKKAHDRNQTSELISSRREQRLSLQERVEHIEREVKDTKGRHKYVLE 923 Query: 179 KLRSTEVAVGRLDVELDNILRKLSDDYELSYELAKQRYAVPEDVPAAQMEVQRLKRSISS 238 L+ EV + RLDVEL+N L+ L + Y +S+E AK +Y + A+ +V+ +K SI Sbjct: 924 VLKDQEVKINRLDVELENRLQHLRETYTISFEAAKLKYTMIMPAEDARKKVKLIKLSIEE 983 Query: 239 LGEVNLGAIEEYQRVHERFTFLSGQKDDLVEAKTTLYHVIREMEEEMSKRFKMTFDAIRR 298 LG VNLGAIEEY+RV ER TFL Q+DDL EAK TL+ VI EM+EEM KRF TF AIR Sbjct: 984 LGTVNLGAIEEYERVAERHTFLLEQRDDLEEAKATLHQVIMEMDEEMKKRFSTTFQAIRT 1043 Query: 299 EFGTVFTKLFGGGRADLMLLDPEHMLDTGIDIVAQPPGKKLQNLQLLSGGERALTAMALL 358 EF TVF +LFGGGRADL++ +P+ +L+TGIDIVAQPPGKKLQNL LLSGGERALTA+ALL Sbjct: 1044 EFQTVFCELFGGGRADLVMTNPQDLLNTGIDIVAQPPGKKLQNLGLLSGGERALTAIALL 1103 Query: 359 FAILQVKPVPFCVLDEVEAALDEANVVRFAQYLREFSEQTQFIVVTHRKGTMEEADVLYG 418 F IL+V+PVPFCVLDEVEAALDEANV RFAQYL++FS++TQFIV+THRKGTMEE+DVLYG Sbjct: 1104 FGILKVRPVPFCVLDEVEAALDEANVARFAQYLKKFSDETQFIVITHRKGTMEESDVLYG 1163 Query: 419 VTMEEGGVSKLVSVKLEDEEAEIA 442 VTM+E GVSKLVSV+L+D E +A Sbjct: 1164 VTMQESGVSKLVSVRLDDGEELVA 1187 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.130 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,076,940,472 Number of extensions: 78419014 Number of successful extensions: 313054 Number of sequences better than 1.0e-05: 1770 Number of HSP's gapped: 312647 Number of HSP's successfully gapped: 1770 Length of query: 442 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 303 Effective length of database: 1,751,175,118 Effective search space: 530606060754 Effective search space used: 530606060754 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)