BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0083.p (189 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGK1.1 B3KGK1_9BACI Chromosome segregation protein SMC 242 1e-62 B1DME2.1 B1DME2_9BACL Chromosome segregation protein SMC 211 2e-53 C0ZFN9.1 C0ZFN9_BREBN Chromosome partition protein SMC 169 1e-40 Q9KA07.1 Q9KA07_BACHD Chromosome segregation SMC protein 164 2e-39 P51834.3 SMC_BACSU Chromosome partition protein smc 157 5e-37 >B3KGK1.1 B3KGK1_9BACI Chromosome segregation protein SMC Length = 1061 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 116/156 (74%), Positives = 135/156 (86%) Query: 1 VVMDNEAVSRQAISFLKQRQLGRATFLPLDVIRARQIGGSDRSMVEGADGFVGIGSELVG 60 +VM+NE+VSRQAISFLKQRQLGRATFLPLDVIR R + SDR + EG GFVG GSELV Sbjct: 552 IVMENESVSRQAISFLKQRQLGRATFLPLDVIRPRNVSASDRHLAEGEAGFVGFGSELVK 611 Query: 61 FEDRYASIVGSLLGNVVIAESLEQANRIAAKCQYRYRVVTLEGDVVNAGGSMTGGSQHKK 120 ++ RY++IVGSLLGNVVIAE+LEQAN+IAA+ YR+RVVTLEGDVVNAGGSMTGGSQHKK Sbjct: 612 YDSRYSNIVGSLLGNVVIAETLEQANKIAARFSYRFRVVTLEGDVVNAGGSMTGGSQHKK 671 Query: 121 NNSLLSRKRQLDQLFSEIEESERQIAKLKQGISRLR 156 NSLL RKRQL+QL EI E+E+Q+ KL+QGI +R Sbjct: 672 TNSLLGRKRQLEQLDQEISETEKQLEKLQQGIEGVR 707 >B1DME2.1 B1DME2_9BACL Chromosome segregation protein SMC Length = 1114 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 105/173 (60%), Positives = 133/173 (76%) Query: 1 VVMDNEAVSRQAISFLKQRQLGRATFLPLDVIRARQIGGSDRSMVEGADGFVGIGSELVG 60 +VM++E +R AISFLKQRQLGRATFLPLDVIR R + ++ M E DGFVG+ ++LV Sbjct: 556 IVMEDEKSARSAISFLKQRQLGRATFLPLDVIRGRHVPEHEKRMAESVDGFVGVAADLVS 615 Query: 61 FEDRYASIVGSLLGNVVIAESLEQANRIAAKCQYRYRVVTLEGDVVNAGGSMTGGSQHKK 120 E RY +I+ +LLGNV++AE+LEQANRIA+KCQYRYRVVTLEGDVVNAGGSMTGGS KK Sbjct: 616 CEPRYEAIIQNLLGNVLLAETLEQANRIASKCQYRYRVVTLEGDVVNAGGSMTGGSLQKK 675 Query: 121 NNSLLSRKRQLDQLFSEIEESERQIAKLKQGISRLREEQENASRKLXXXXSCA 173 SLL R+RQ++ L EI E E+ IA+L+ +S +R+EQ S+K+ S A Sbjct: 676 GASLLGRQRQIEALDQEIMEGEKTIAQLRDKLSDVRKEQSILSQKMEELRSQA 728 >C0ZFN9.1 C0ZFN9_BREBN Chromosome partition protein SMC Length = 1190 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/167 (53%), Positives = 118/167 (70%), Gaps = 7/167 (4%) Query: 1 VVMDNEAVSRQAISFLKQRQLGRATFLPLDVIRARQIGGSDRSMVEGADGFVGIGSELVG 60 VV+DNEA R AI+ LKQ GRATFLPLDVIR R + SD+ +E G VGI SELV Sbjct: 550 VVVDNEASGRAAIAHLKQHNAGRATFLPLDVIRPRTLQASDKRQLEEESGVVGIASELVT 609 Query: 61 FEDRYASIVGSLLGNVVIAESLEQANRIAAKCQYRYRVVTLEGDVVNAGGSMTGGSQHKK 120 FE+ Y I+ SLLGNV+I E LEQANR+A YRYRVVTLEGD+VNAGGSMTGG+ K Sbjct: 610 FEEAYRPILESLLGNVIITEKLEQANRVARTLGYRYRVVTLEGDIVNAGGSMTGGALKKN 669 Query: 121 NNSLLSRKRQLDQLFSEIEESERQIA-------KLKQGISRLREEQE 160 + +LL R RQ ++L +++ E ++ I+ +L + ++++++EQE Sbjct: 670 STNLLGRNRQSEELEAQLVEIDQAISGHTTLMEQLTKELAQMQQEQE 716 >Q9KA07.1 Q9KA07_BACHD Chromosome segregation SMC protein Length = 1188 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 117/158 (74%) Query: 1 VVMDNEAVSRQAISFLKQRQLGRATFLPLDVIRARQIGGSDRSMVEGADGFVGIGSELVG 60 +V+++E +RQAI +LKQ++ GRATFLPL V++ R++ + +++ D FVGI SELV Sbjct: 550 IVVESEQAARQAIQYLKQQRFGRATFLPLPVMKGRELPAASMQLIQEHDAFVGIASELVS 609 Query: 61 FEDRYASIVGSLLGNVVIAESLEQANRIAAKCQYRYRVVTLEGDVVNAGGSMTGGSQHKK 120 F+ R+ ++ +LLG+V++A+SLE AN IA Q+RYR+VTLEGDVVN GGSMTGGS +K Sbjct: 610 FDQRFTPVIRNLLGHVIVAKSLEGANAIARLLQHRYRIVTLEGDVVNPGGSMTGGSVKQK 669 Query: 121 NNSLLSRKRQLDQLFSEIEESERQIAKLKQGISRLREE 158 LL R+R+L++L ++++ E+ AKL+Q + + + E Sbjct: 670 QTPLLGRQRELEELTDKLKQLEKAAAKLEQEVKQQKNE 707 >P51834.3 SMC_BACSU Chromosome partition protein smc Length = 1186 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 80/166 (48%), Positives = 108/166 (65%) Query: 1 VVMDNEAVSRQAISFLKQRQLGRATFLPLDVIRARQIGGSDRSMVEGADGFVGIGSELVG 60 VV D+E +R+AI +LKQ GRATFLPL VIR RQ+ D F+G+ SELV Sbjct: 549 VVTDDEQSARKAIQYLKQNSFGRATFLPLSVIRDRQLQSRDAETAARHSSFLGVASELVT 608 Query: 61 FEDRYASIVGSLLGNVVIAESLEQANRIAAKCQYRYRVVTLEGDVVNAGGSMTGGSQHKK 120 F+ Y S++ +LLG V+I E L+ AN +A +RYR+VTLEGDVVN GGSMTGG+ KK Sbjct: 609 FDPAYRSVIQNLLGTVLITEDLKGANELAKLLGHRYRIVTLEGDVVNPGGSMTGGAVKKK 668 Query: 121 NNSLLSRKRQLDQLFSEIEESERQIAKLKQGISRLREEQENASRKL 166 NNSLL R R+L+ + + E E + A L+Q + L+ ++ +KL Sbjct: 669 NNSLLGRSRELEDVTKRLAEMEEKTALLEQEVKTLKHSIQDMEKKL 714 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 943,546,158 Number of extensions: 35008542 Number of successful extensions: 152833 Number of sequences better than 1.0e-05: 890 Number of HSP's gapped: 152467 Number of HSP's successfully gapped: 890 Length of query: 189 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 61 Effective length of database: 1,854,806,283 Effective search space: 113143183263 Effective search space used: 113143183263 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)