BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0079.p (187 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGK2.1 B3KGK2_9BACI Ribonuclease III EC=3.1.26.3 257 4e-67 Q5L0Q3.1 RNC_GEOKA Ribonuclease 3 EC=3.1.26.3 206 1e-51 C3J034.1 C3J034_9BACI Ribonuclease III EC=3.1.26.3 206 1e-51 B7Y8P7.1 B7Y8P7_9BACI Ribonuclease III EC=3.1.26.3 206 1e-51 C3BNS5.1 C3BNS5_9BACI Ribonuclease 3 205 1e-51 >B3KGK2.1 B3KGK2_9BACI Ribonuclease III EC=3.1.26.3 Length = 233 Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 126/154 (81%), Positives = 136/154 (88%) Query: 1 VKGDLKQLQSQLQIQFHDAVLLKQAFTHASYVNEHRFNQHQDNERLEFLGDAVLELTVSE 60 + GDLKQLQ +LQIQF +A+LLKQAFTHASYVNEHRF+Q QDNERLEFLGDAVLELTVSE Sbjct: 2 LSGDLKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSE 61 Query: 61 YLYNLLPDRPEGELTKLRAAIVCEPSLVRFAESLGFGRYVLLGKGEELTGGRTRPALLAD 120 +LYNL PDRPEGELTKLRAAIVCEPSLV+FA SL FGRYVLLGKGEE+TGGRTRPALLAD Sbjct: 62 FLYNLFPDRPEGELTKLRAAIVCEPSLVQFAVSLDFGRYVLLGKGEEMTGGRTRPALLAD 121 Query: 121 VFESFVGALYLDQGLETARRFLDNXXXXCIPAGG 154 VFESFVGALYLDQGLE RRFL + + G Sbjct: 122 VFESFVGALYLDQGLEAVRRFLSDHVFPTVTVNG 155 >Q5L0Q3.1 RNC_GEOKA Ribonuclease 3 EC=3.1.26.3 Length = 246 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/153 (65%), Positives = 119/153 (77%) Query: 2 KGDLKQLQSQLQIQFHDAVLLKQAFTHASYVNEHRFNQHQDNERLEFLGDAVLELTVSEY 61 + ++LQ+++ I F + LL QAFTH+SYVNEHR H+DNERLEFLGDAVLELTVS+Y Sbjct: 15 RAKFQELQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQY 74 Query: 62 LYNLLPDRPEGELTKLRAAIVCEPSLVRFAESLGFGRYVLLGKGEELTGGRTRPALLADV 121 L+ P EG+LTKLRAAIVCEPSLV+FA +L FG VLLGKGEELTGGRTRPALLADV Sbjct: 75 LFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADV 134 Query: 122 FESFVGALYLDQGLETARRFLDNXXXXCIPAGG 154 FE+F+GALYLDQG++ RFL+ I G Sbjct: 135 FEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGA 167 >C3J034.1 C3J034_9BACI Ribonuclease III EC=3.1.26.3 Length = 246 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/153 (65%), Positives = 118/153 (77%) Query: 2 KGDLKQLQSQLQIQFHDAVLLKQAFTHASYVNEHRFNQHQDNERLEFLGDAVLELTVSEY 61 + ++LQ ++ I F + LL QAFTH+SYVNEHR H+DNERLEFLGDAVLELTVS+Y Sbjct: 15 RAKFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQY 74 Query: 62 LYNLLPDRPEGELTKLRAAIVCEPSLVRFAESLGFGRYVLLGKGEELTGGRTRPALLADV 121 L+ P EG+LTKLRAAIVCEPSLV+FA +L FG VLLGKGEELTGGRTRPALLADV Sbjct: 75 LFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADV 134 Query: 122 FESFVGALYLDQGLETARRFLDNXXXXCIPAGG 154 FE+F+GALYLDQG++ RFL+ I G Sbjct: 135 FEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGA 167 >B7Y8P7.1 B7Y8P7_9BACI Ribonuclease III EC=3.1.26.3 Length = 246 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/153 (65%), Positives = 118/153 (77%) Query: 2 KGDLKQLQSQLQIQFHDAVLLKQAFTHASYVNEHRFNQHQDNERLEFLGDAVLELTVSEY 61 + ++LQ ++ I F + LL QAFTH+SYVNEHR H+DNERLEFLGDAVLELTVS+Y Sbjct: 15 RAKFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQY 74 Query: 62 LYNLLPDRPEGELTKLRAAIVCEPSLVRFAESLGFGRYVLLGKGEELTGGRTRPALLADV 121 L+ P EG+LTKLRAAIVCEPSLV+FA +L FG VLLGKGEELTGGRTRPALLADV Sbjct: 75 LFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADV 134 Query: 122 FESFVGALYLDQGLETARRFLDNXXXXCIPAGG 154 FE+F+GALYLDQG++ RFL+ I G Sbjct: 135 FEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGA 167 >C3BNS5.1 C3BNS5_9BACI Ribonuclease 3 Length = 245 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/150 (68%), Positives = 112/150 (74%) Query: 5 LKQLQSQLQIQFHDAVLLKQAFTHASYVNEHRFNQHQDNERLEFLGDAVLELTVSEYLYN 64 K Q ++ I F D LL QAFTH+SYVNEHR H+DNERLEFLGDAVLELTVS+YL+ Sbjct: 19 FKMFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 65 LLPDRPEGELTKLRAAIVCEPSLVRFAESLGFGRYVLLGKGEELTGGRTRPALLADVFES 124 P EGELTKLRAA+VCEPSLVRFA L FG VLLGKGEE+TGGR RPALLADVFE+ Sbjct: 79 KYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 125 FVGALYLDQGLETARRFLDNXXXXCIPAGG 154 F+GALYLDQGLET FL I G Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPKINEGA 168 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,100,767,329 Number of extensions: 44960032 Number of successful extensions: 96351 Number of sequences better than 1.0e-05: 1749 Number of HSP's gapped: 95360 Number of HSP's successfully gapped: 1789 Length of query: 187 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 59 Effective length of database: 1,854,806,283 Effective search space: 109433570697 Effective search space used: 109433570697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)