BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0077.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGK4.1 B3KGK4_9BACI Acyl carrier protein                            105   2e-21
B1DJL6.1 B1DJL6_9BACL Acyl carrier protein                            100   5e-20
C0ZFP2.1 ACP_BREBN Acyl carrier protein                                93   1e-17
A4IM66.1 A4IM66_GEOTN Acyl carrier protein                             88   3e-16
B4BJ75.1 B4BJ75_9BACI Acyl carrier protein                             85   2e-15

>B3KGK4.1 B3KGK4_9BACI Acyl carrier protein
          Length = 77

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 58/77 (75%)

Query: 4  MSDVLERVKRIVIDRLGADEAEVTLEASFKDDLGADSXXXXXXXXXXXXXXXXXISDEDA 63
          MSDVLERVKRIVIDRLG DEA+VTLEASFKDDLGADS                 ISDEDA
Sbjct: 1  MSDVLERVKRIVIDRLGVDEADVTLEASFKDDLGADSLDVVELVMELEDEFDMEISDEDA 60

Query: 64 EKITTVGEVVKYIQSHT 80
          EKITTVGEVV YIQSHT
Sbjct: 61 EKITTVGEVVNYIQSHT 77


>B1DJL6.1 B1DJL6_9BACL Acyl carrier protein
          Length = 77

 Score =  100 bits (248), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 57/77 (74%)

Query: 4  MSDVLERVKRIVIDRLGADEAEVTLEASFKDDLGADSXXXXXXXXXXXXXXXXXISDEDA 63
          MS+V+ERVKRIV+DRLG DEAEVTLEASFKDDLGADS                 ISDEDA
Sbjct: 1  MSEVVERVKRIVVDRLGVDEAEVTLEASFKDDLGADSLDVVELVMELEDEFDLEISDEDA 60

Query: 64 EKITTVGEVVKYIQSHT 80
          E ITTVGEVV YIQSHT
Sbjct: 61 ETITTVGEVVNYIQSHT 77


>C0ZFP2.1 ACP_BREBN Acyl carrier protein
          Length = 77

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 57/76 (75%)

Query: 4  MSDVLERVKRIVIDRLGADEAEVTLEASFKDDLGADSXXXXXXXXXXXXXXXXXISDEDA 63
          M+D LERVK+I++DRLG DE+++TLEASFK+DLGADS                 ISDEDA
Sbjct: 1  MADTLERVKKIIVDRLGVDESKITLEASFKEDLGADSLDVVELVMELEDEFDLEISDEDA 60

Query: 64 EKITTVGEVVKYIQSH 79
          EKIT+VGEVVKYI+SH
Sbjct: 61 EKITSVGEVVKYIESH 76


>A4IM66.1 A4IM66_GEOTN Acyl carrier protein
          Length = 80

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 55/79 (69%)

Query: 1  VNRMSDVLERVKRIVIDRLGADEAEVTLEASFKDDLGADSXXXXXXXXXXXXXXXXXISD 60
          +N M+DVLERV +I++DRLG DE++VTLEASFKDDLGADS                 ISD
Sbjct: 1  MNAMADVLERVTKIIVDRLGVDESQVTLEASFKDDLGADSLDIVELVMELEDEFNMEISD 60

Query: 61 EDAEKITTVGEVVKYIQSH 79
          E+AEKI TVG+ V YI+S 
Sbjct: 61 EEAEKIVTVGDAVNYIKSQ 79


>B4BJ75.1 B4BJ75_9BACI Acyl carrier protein
          Length = 77

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 53/76 (69%)

Query: 4  MSDVLERVKRIVIDRLGADEAEVTLEASFKDDLGADSXXXXXXXXXXXXXXXXXISDEDA 63
          M+DVLERV +I++DRLG DE++VTLEASFKDDLGADS                 ISDE+A
Sbjct: 1  MADVLERVTKIIVDRLGVDESQVTLEASFKDDLGADSLDIVELVMELEDEFNMEISDEEA 60

Query: 64 EKITTVGEVVKYIQSH 79
          EKI TVG+ V YI+S 
Sbjct: 61 EKIVTVGDAVNYIKSQ 76


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.130    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 306,062,631
Number of extensions: 6865351
Number of successful extensions: 14237
Number of sequences better than 1.0e-05: 1014
Number of HSP's gapped: 13754
Number of HSP's successfully gapped: 1014
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)