BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0073.p (339 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGK8.1 B3KGK8_9BACI Fatty acid/phospholipid synthesis protein ... 504 e-141 B1DJM1.1 B1DJM1_9BACL Fatty acid/phospholipid synthesis protein ... 465 e-129 A8VRV5.1 A8VRV5_9BACI Primosomal protein N' 372 e-101 Q9KA01.1 PLSX_BACHD Fatty acid/phospholipid synthesis protein plsX 369 e-100 Q2B7A7.1 Q2B7A7_9BACI Fatty acid/phospholipid synthesis protein 366 2e-99 >B3KGK8.1 B3KGK8_9BACI Fatty acid/phospholipid synthesis protein PlsX Length = 328 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 258/327 (78%), Positives = 291/327 (88%), Gaps = 1/327 (0%) Query: 13 IAIDAMGGDNAPECNVEGALSAAAEWSDTQIVLVGDEARLEPLLINKPANVTVRHAGDVI 72 I +DAMGGDNAP+ NV+GAL AA EWSDT+I+LVGDEAR+ LL +KP+N+ V HA +VI Sbjct: 3 IVVDAMGGDNAPQSNVDGALIAAREWSDTEIILVGDEARIGALLKDKPSNLKVVHASEVI 62 Query: 73 GSDEEPVKAVRRKKDSSMVVAGRMVREGEADAMISSGNTGALMTTGLLVVGRMQGIERPA 132 +++EPVKAVRRKKD+SMVVAGRM+REGEADAMIS+GNTGALMTTGLLVVGRM+GIERPA Sbjct: 63 EAEDEPVKAVRRKKDASMVVAGRMIREGEADAMISAGNTGALMTTGLLVVGRMKGIERPA 122 Query: 133 LAPMIPTLDEVGVLALDLGANMDAKPQHLVQYALMGSIYRSQVHGIAKPRVGLLNVGTEP 192 LAPMIPTLD G+LALDLGANMD+KP+HL QYALMGS+YR +VHGIAKPRVGLLNVGTEP Sbjct: 123 LAPMIPTLDGKGMLALDLGANMDSKPEHLQQYALMGSLYREKVHGIAKPRVGLLNVGTEP 182 Query: 193 GKGNELTKETYPLLEALQGIHFVGNVEARDVLTGGCDVLVCDGFAGNILLKTLEGTAGAM 252 GKGNELTK YPLLE L IHFVGNVE+RDV+ G CDVLVCDGF+GNILLK++EGTAGA+ Sbjct: 183 GKGNELTKHAYPLLEELP-IHFVGNVESRDVMNGVCDVLVCDGFSGNILLKSIEGTAGAL 241 Query: 253 FSLLKEQFSKSLKTKLGAAILMPELRGLKGKMDYKEHGGAPLLGLSGLVVKGHGSSDGNA 312 FSLLKEQF KSLKTK+ AA++MPELR LK +DYKEHGGAPLLGL GLVVK HGSSD NA Sbjct: 242 FSLLKEQFGKSLKTKMAAALMMPELRSLKSTLDYKEHGGAPLLGLGGLVVKSHGSSDANA 301 Query: 313 VKNAVRQARIALQADLVASISKEISGK 339 +KN VRQAR ALQ LV SIS EISGK Sbjct: 302 IKNGVRQARTALQNRLVESISNEISGK 328 >B1DJM1.1 B1DJM1_9BACL Fatty acid/phospholipid synthesis protein PlsX Length = 330 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 230/328 (70%), Positives = 274/328 (83%), Gaps = 2/328 (0%) Query: 13 IAIDAMGGDNAPECNVEGALSAAAEWSDTQIVLVGDEARLEPLLI-NKPANVTVRHAGDV 71 IAIDAMGGD+AP V+G L AAAEW DT++VLVGD A +EPLL KPANVT+ H +V Sbjct: 3 IAIDAMGGDHAPGLIVQGVLEAAAEWPDTELVLVGDTAAVEPLLKGQKPANVTLCHTDEV 62 Query: 72 IGSDEEPVKAVRRKKDSSMVVAGRMVREGEADAMISSGNTGALMTTGLLVVGRMQGIERP 131 IG DEEPVKAVRRKK SSMVVAG++VRE ADAMIS+GNTGALMTTGLLVVGR++GIERP Sbjct: 63 IGPDEEPVKAVRRKKGSSMVVAGQLVREKRADAMISAGNTGALMTTGLLVVGRLEGIERP 122 Query: 132 ALAPMIPTLDEVGVLALDLGANMDAKPQHLVQYALMGSIYRSQVHGIAKPRVGLLNVGTE 191 ALAPM+PT+D+VGVLALDLGANMDAKP+HL+QYA+MGSIYR++V G PRVGLLNVGTE Sbjct: 123 ALAPMLPTMDDVGVLALDLGANMDAKPEHLLQYAIMGSIYRAKVDGFDNPRVGLLNVGTE 182 Query: 192 PGKGNELTKETYPLLEALQGIHFVGNVEARDVLTGGCDVLVCDGFAGNILLKTLEGTAGA 251 KGNELTK Y LL+ I+F+GNVEARD+L CD+L+CDGFAGNI+LK +EGTAG+ Sbjct: 183 ERKGNELTKAAYDLLDQAP-INFIGNVEARDLLNRSCDILICDGFAGNIMLKAMEGTAGS 241 Query: 252 MFSLLKEQFSKSLKTKLGAAILMPELRGLKGKMDYKEHGGAPLLGLSGLVVKGHGSSDGN 311 + S LK+ F +++ TKL AA++MP LR L+ KMDYKEHG APLLGL+GLV+K HGSSD Sbjct: 242 LMSFLKDAFGETMLTKLAAAVMMPRLRALRKKMDYKEHGSAPLLGLNGLVMKCHGSSDAK 301 Query: 312 AVKNAVRQARIALQADLVASISKEISGK 339 AVKNA+RQAR A++A L SI+ EI G+ Sbjct: 302 AVKNAIRQARTAIKAQLTESIAAEIGGR 329 >A8VRV5.1 A8VRV5_9BACI Primosomal protein N' Length = 335 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 182/324 (56%), Positives = 246/324 (75%), Gaps = 1/324 (0%) Query: 13 IAIDAMGGDNAPECNVEGALSAAAEWSDTQIVLVGDEARLEPLLINKPANVTVRHAGDVI 72 +A+DAMGGDNAP+ V+G+L A ++ D +IVL+GDEA++ P L ++V H + I Sbjct: 3 LAVDAMGGDNAPKSIVKGSLMALKQFDDIEIVLIGDEAQITPHLEGSDKRISVLHTDEWI 62 Query: 73 GSDEEPVKAVRRKKDSSMVVAGRMVREGEADAMISSGNTGALMTTGLLVVGRMQGIERPA 132 S++ PVKAVRRKK++SMV+ + V+EG ADA IS+GNTGALMT GLL+VGR +GIERPA Sbjct: 63 TSEDSPVKAVRRKKNASMVLTVKEVKEGRADAAISAGNTGALMTAGLLIVGRAKGIERPA 122 Query: 133 LAPMIPTLDEVGVLALDLGANMDAKPQHLVQYALMGSIYRSQVHGIAKPRVGLLNVGTEP 192 L+PM+PT + G L LD+GANM+AKP HL+QYALMG +Y +V I KPR+GLLNVG E Sbjct: 123 LSPMLPTKNGDGFLLLDVGANMEAKPNHLLQYALMGDVYMRKVRQIEKPRIGLLNVGAEA 182 Query: 193 GKGNELTKETYPLLEALQGIHFVGNVEARDVLTGGCDVLVCDGFAGNILLKTLEGTAGAM 252 GKG+ELTK+ Y L+E +HFVGNVEARD+L G DV+V DGF+GN++LK++EGTA ++ Sbjct: 183 GKGSELTKQAYELIEN-SDVHFVGNVEARDLLDGVADVVVADGFSGNLVLKSVEGTALSL 241 Query: 253 FSLLKEQFSKSLKTKLGAAILMPELRGLKGKMDYKEHGGAPLLGLSGLVVKGHGSSDGNA 312 FS+LK + + +LK KL AA+L P + +K KMDY E+GGA L GL VVK HGSSD A Sbjct: 242 FSILKTELTSTLKNKLAAAVLKPAFKKVKDKMDYSEYGGAGLFGLKSPVVKAHGSSDERA 301 Query: 313 VKNAVRQARIALQADLVASISKEI 336 +A+RQAR+ ++ ++ +I++EI Sbjct: 302 FFSALRQARLMVEEEVAPTIAREI 325 >Q9KA01.1 PLSX_BACHD Fatty acid/phospholipid synthesis protein plsX Length = 337 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/325 (56%), Positives = 234/325 (72%), Gaps = 1/325 (0%) Query: 13 IAIDAMGGDNAPECNVEGALSAAAEWSDTQIVLVGDEARLEPLLINKPANVTVRHAGDVI 72 IA+D MGGD+APE +VE A+ A + D I LVG+E + PLL + + H + I Sbjct: 3 IALDVMGGDHAPEAHVEAAIKAVKAFPDLTITLVGNEEEIRPLLPANDPRLPILHTTEKI 62 Query: 73 GSDEEPVKAVRRKKDSSMVVAGRMVREGEADAMISSGNTGALMTTGLLVVGRMQGIERPA 132 ++P AVRRKKDSSMV+A R V+EG ADA+ISSGNTGALMT GLL VGR+QGI+RPA Sbjct: 63 EDTDQPTTAVRRKKDSSMVLAVREVKEGRADAVISSGNTGALMTAGLLYVGRIQGIDRPA 122 Query: 133 LAPMIPTLDEVGVLALDLGANMDAKPQHLVQYALMGSIYRSQVHGIAKPRVGLLNVGTEP 192 LAPM+PTLDE G L LD+GANMD KP+HL+QYA+MG+ Y V GI +PRVGLLNVGTE Sbjct: 123 LAPMLPTLDEKGFLLLDVGANMDGKPEHLLQYAIMGNTYMEMVRGIKQPRVGLLNVGTEA 182 Query: 193 GKGNELTKETYPLLEALQGIHFVGNVEARDVLTGGCDVLVCDGFAGNILLKTLEGTAGAM 252 GKGNELTK +PLLEA HF+GNVEAR++L G CDV+VCDGF+GN++LK++EGTAG+M Sbjct: 183 GKGNELTKAAFPLLEA-GPFHFIGNVEARELLNGACDVVVCDGFSGNLVLKSVEGTAGSM 241 Query: 253 FSLLKEQFSKSLKTKLGAAILMPELRGLKGKMDYKEHGGAPLLGLSGLVVKGHGSSDGNA 312 FSLLK + +K+ +KL A+L + +K M Y E+GGA L GL V+K HGSS ++ Sbjct: 242 FSLLKRELTKTFISKLAVALLKGRFKEIKQVMSYSEYGGASLFGLKAPVIKAHGSSVASS 301 Query: 313 VKNAVRQARIALQADLVASISKEIS 337 V + + QA + + I E++ Sbjct: 302 VYHTIAQAYEMVNQQVTTIIKTEVA 326 >Q2B7A7.1 Q2B7A7_9BACI Fatty acid/phospholipid synthesis protein Length = 334 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 189/328 (57%), Positives = 248/328 (75%), Gaps = 5/328 (1%) Query: 13 IAIDAMGGDNAPECNVEGALSAAAEWSDTQIVLVGDEARL-EPLLINKPANVTVRHAGDV 71 IAIDAMGGDNAP+ V GA+ AAAE+ D I LVGDE R+ E L +++ + + H ++ Sbjct: 4 IAIDAMGGDNAPKEIVLGAMKAAAEFKDIHITLVGDEKRIREHLTVSE--RIEIIHTEEM 61 Query: 72 IGSDEEPVKAVRRKKDSSMVVAGRMVREGEADAMISSGNTGALMTTGLLVVGRMQGIERP 131 I +EPV+AVRRKKD+SMV+A R V +G ADA IS+GNTGALM GL VVGR++GIERP Sbjct: 62 ILGTDEPVRAVRRKKDASMVLAARQVADGNADACISAGNTGALMAAGLFVVGRIEGIERP 121 Query: 132 ALAPMIPTLDEVGVLALDLGANMDAKPQHLVQYALMGSIYRSQVHGIAKPRVGLLNVGTE 191 AL+P +PT+D G L LD+GAN+DAKP+HL+QYA+MGSIY +V GI+ PRVGLLN+GTE Sbjct: 122 ALSPTLPTIDGKGFLLLDVGANVDAKPEHLLQYAVMGSIYCEKVRGISNPRVGLLNIGTE 181 Query: 192 PGKGNELTKETYPLLEALQGIHFVGNVEARDVLTGGCDVLVCDGFAGNILLKTLEGTAGA 251 KGNEL K + L++ G++FVGNVEARD+L G DV+V DGF GN++LKT+EGTA + Sbjct: 182 EKKGNELAKNAFGLIKD-AGLNFVGNVEARDLLEGAADVVVTDGFTGNMVLKTIEGTALS 240 Query: 252 MFSLLKEQFSKSLKTKLGAAILMPELRGLKGKMDYKEHGGAPLLGLSGLVVKGHGSSDGN 311 +F ++KE + SLK+K+ AA+L P+L LK KMDY E+GGA L GL+ V+K HGSSD N Sbjct: 241 VFKMMKEAMTSSLKSKMAAAVLKPDLVQLKSKMDYSEYGGAGLFGLNAPVIKAHGSSDRN 300 Query: 312 AVKNAVRQARIALQADLVASISKEISGK 339 A+ +AVRQ R +Q ++ +I K +GK Sbjct: 301 ALYSAVRQTREMVQNNVAETI-KAAAGK 327 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,997,038,881 Number of extensions: 84808480 Number of successful extensions: 170121 Number of sequences better than 1.0e-05: 1207 Number of HSP's gapped: 167173 Number of HSP's successfully gapped: 1207 Length of query: 339 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 203 Effective length of database: 1,779,438,163 Effective search space: 361225947089 Effective search space used: 361225947089 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)