BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0072.p (179 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGK9.1 B3KGK9_9BACI Putative uncharacterized protein 268 2e-70 B1DJM2.1 B1DJM2_9BACL Transcriptional regulator, DeoR family 243 5e-63 C0ZFP7.1 C0ZFP7_BREBN Fatty acid and phospholipid biosynthesis r... 195 2e-48 Q2B7A6.1 Q2B7A6_9BACI Transcriptional regulator of fatty acid bi... 194 2e-48 C2WAY1.1 C2WAY1_BACCE Transcription factor fapR 194 3e-48 >B3KGK9.1 B3KGK9_9BACI Putative uncharacterized protein Length = 203 Score = 268 bits (684), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 129/161 (80%), Positives = 148/161 (91%) Query: 1 MSKKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSY 60 +SKK+R Q+L+Q+ID NPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSY Sbjct: 19 LSKKDRHQRLIQLIDENPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSY 78 Query: 61 DQVRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIIN 120 DQVRSL +EV+GD+VDLQLD+SGISIFEIRE+HVFS+ IARGHYVFAQANSLA+A+IN Sbjct: 79 DQVRSLSLEEVIGDVVDLQLDKSGISIFEIREEHVFSKTRIARGHYVFAQANSLAIAVIN 138 Query: 121 DEIALTASAXXXXVRMVRLGEKCIAKAQVRSLAGRNGKAEV 161 +EIALT+SA +R VRLGEKCIAKA VRS+AG+ GKA+V Sbjct: 139 EEIALTSSADIRFLRQVRLGEKCIAKAYVRSIAGQKGKAKV 179 >B1DJM2.1 B1DJM2_9BACL Transcriptional regulator, DeoR family Length = 190 Score = 243 bits (620), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 119/161 (73%), Positives = 138/161 (85%) Query: 1 MSKKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSY 60 M K++R Q L Q+ID NPF+TDRELTR LKVSIQTIRLDRMELGIPELRERMK MAE SY Sbjct: 1 MPKRQRHQLLAQLIDENPFMTDRELTRHLKVSIQTIRLDRMELGIPELRERMKLMAERSY 60 Query: 61 DQVRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIIN 120 D V+SLP EV+GDIVDLQLD+SGISIFEIRE+HVFSR GIARGH+VFAQANSLAVA+I Sbjct: 61 DSVQSLPLHEVIGDIVDLQLDKSGISIFEIREEHVFSRTGIARGHHVFAQANSLAVAVIE 120 Query: 121 DEIALTASAXXXXVRMVRLGEKCIAKAQVRSLAGRNGKAEV 161 ++IALT +A +R V+LGEKCIAKA VRS++G K++V Sbjct: 121 EKIALTVTADIRFIRPVKLGEKCIAKAYVRSISGERHKSKV 161 >C0ZFP7.1 C0ZFP7_BREBN Fatty acid and phospholipid biosynthesis regulator Length = 196 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 121/161 (75%) Query: 1 MSKKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSY 60 + KK+RQ +L+Q + NPF TD +L VSIQTIRLDR+ELGIPELRER+K +AE S Sbjct: 7 LPKKDRQSRLVQYLADNPFATDEDLAELFHVSIQTIRLDRLELGIPELRERIKTVAEKSL 66 Query: 61 DQVRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIIN 120 D V+SL DE++G++VDLQLD IS+ EI+E+HVFS+ IARGHY+FAQANSLAVA+IN Sbjct: 67 DPVKSLGIDEIIGEMVDLQLDSQAISVLEIKEEHVFSKTQIARGHYIFAQANSLAVAVIN 126 Query: 121 DEIALTASAXXXXVRMVRLGEKCIAKAQVRSLAGRNGKAEV 161 ++ALTA+A VR VR GEK +AKA VRS G K V Sbjct: 127 ADVALTATARIRFVRPVRTGEKLVAKAVVRSRNGDECKVRV 167 >Q2B7A6.1 Q2B7A6_9BACI Transcriptional regulator of fatty acid biosynthesis Length = 189 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/159 (57%), Positives = 124/159 (77%), Gaps = 1/159 (0%) Query: 2 SKKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSY- 60 +KKERQQ L++ I NPF+TD +L + VS+QTIRLDR+EL IPELRER+K +AE S+ Sbjct: 4 NKKERQQLLVETIKDNPFITDEDLADRFSVSVQTIRLDRLELSIPELRERIKNVAEKSFE 63 Query: 61 DQVRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIIN 120 D+V+SLP DEV+G+I+D++LD + ISIF+++E+HVF RN IARGH++FAQANSLAVA+IN Sbjct: 64 DEVKSLPIDEVIGEIIDIELDNTAISIFDVKEEHVFKRNRIARGHHLFAQANSLAVAVIN 123 Query: 121 DEIALTASAXXXXVRMVRLGEKCIAKAQVRSLAGRNGKA 159 DE+ALTA A R V E+ IAKA+V + +G+ Sbjct: 124 DELALTAKASIQFTRSVHQNERVIAKAKVVKIDNSSGRT 162 >C2WAY1.1 C2WAY1_BACCE Transcription factor fapR Length = 197 Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 93/161 (57%), Positives = 125/161 (77%), Gaps = 1/161 (0%) Query: 2 SKKERQQQLLQIIDGNPFVTDRELTRQLKVSIQTIRLDRMELGIPELRERMKQMAEHSYD 61 SKKERQ L Q ID NPF+TD EL Q +VSIQT+RLDRMEL IPELRER+K +A ++ Sbjct: 6 SKKERQALLQQTIDSNPFITDEELAEQFQVSIQTVRLDRMELSIPELRERIKHVATRQHE 65 Query: 62 Q-VRSLPADEVVGDIVDLQLDRSGISIFEIREDHVFSRNGIARGHYVFAQANSLAVAIIN 120 + V+SLP +EVVG+I+D++LDR IS+FE++ +HVF RN IARGH++FAQANSLAVA+I+ Sbjct: 66 EDVKSLPLEEVVGEIIDIELDRHAISMFEVKMEHVFKRNQIARGHHLFAQANSLAVAVID 125 Query: 121 DEIALTASAXXXXVRMVRLGEKCIAKAQVRSLAGRNGKAEV 161 +E+ALTA + +R V+LGE+ +AKA+V + G+ V Sbjct: 126 EELALTAKSTIRYIRPVKLGERVVAKARVEDVENDKGRTVV 166 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 857,488,954 Number of extensions: 29945092 Number of successful extensions: 79738 Number of sequences better than 1.0e-05: 168 Number of HSP's gapped: 79634 Number of HSP's successfully gapped: 168 Length of query: 179 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 52 Effective length of database: 1,864,227,298 Effective search space: 96939819496 Effective search space used: 96939819496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)