BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0071.p (176 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGL1.1 B3KGL1_9BACI Putative uncharacterized protein 169 1e-40 C0ZFQ3.1 C0ZFQ3_BREBN Putative uncharacterized protein 94 5e-18 B1KWP8.1 B1KWP8_CLOBM Ribosomal protein L32 family protein 77 6e-13 B1II89.1 B1II89_CLOBK Ribosomal protein L32 family protein 75 2e-12 C4Z918.1 C4Z918_9FIRM Predicted Zn-finger-like protein, possible... 75 2e-12 >B3KGL1.1 B3KGL1_9BACI Putative uncharacterized protein Length = 170 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 83/169 (49%), Positives = 109/169 (64%), Gaps = 1/169 (0%) Query: 4 MKIHFRKLANADEPLHIHETLDVSELVKGRKDILAVAPLSVDLKALPADADCVNVVGKLN 63 M I FRKL +D+PL H+T+DVS +K RKDI+AV PL VDLKA P+ V+V G+L Sbjct: 1 MLIQFRKLTTSDQPLQFHQTVDVSNAIKDRKDIVAVKPLDVDLKATPSVTGSVDVRGRLQ 60 Query: 64 GNVDMLCARCLTEVNSKLNIPFAETFKWLKQPXXXXXXXXXXXXXXXXXXXXV-PFVEEN 122 G ++M C+RCL ++ ++IPF E F+ ++ P + P+VEE Sbjct: 61 GELEMNCSRCLKPISEHVHIPFHEVFQPVEDPESVVQDEDDDTTYVQGESVDLTPYVEEA 120 Query: 123 FVLHLPDSVLCKADCLGLCQKCGQNLNEGTCSCDNTVIDPRLAALKGFF 171 F+LHLP + +CKADC GLC CG++LNEGTC CD VIDPRLA LK FF Sbjct: 121 FLLHLPLAPVCKADCKGLCPNCGKDLNEGTCDCDTEVIDPRLAGLKDFF 169 >C0ZFQ3.1 C0ZFQ3_BREBN Putative uncharacterized protein Length = 172 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 1/156 (0%) Query: 16 EPLHIHETLDVSELVKGRKDILAVAPLSVDLKALPADADCVNVVGKLNGNVDMLCARCLT 75 EPL TLD EL K +I + P++ +A+ + V G + +V+ +CARCL Sbjct: 14 EPLPFQVTLDADELKKRHHEIRGITPVTASGEAVQL-GNLYYVKGSMKADVNFVCARCLN 72 Query: 76 EVNSKLNIPFAETFKWLKQPXXXXXXXXXXXXXXXXXXXXVPFVEENFVLHLPDSVLCKA 135 + + F+ETF P ++E+F+L +P LC+ Sbjct: 73 PFVDQATVDFSETFALSDDPILQDDEDSDILPLEGDEIELDSLLQEDFLLAMPTFPLCEE 132 Query: 136 DCLGLCQKCGQNLNEGTCSCDNTVIDPRLAALKGFF 171 DC GLC CG N NE CSC N +DPRLA L FF Sbjct: 133 DCKGLCPTCGVNRNEVACSCKNERVDPRLAGLADFF 168 >B1KWP8.1 B1KWP8_CLOBM Ribosomal protein L32 family protein Length = 166 Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Query: 25 DVSELVKGRKDILAVAPLSVDLKALPADADCVNVVGKLNGNVDMLCARCLTEVNSKLNIP 84 D E G ++IL + ++D + D + + GKL+ +++ C+RCL + ++ Sbjct: 24 DEGEFFDGDEEILYLEAPTLD-GEVSISEDILTLNGKLSAEIELSCSRCLQKFKHHVDTE 82 Query: 85 FAETFKWLKQPXXXXXXXXXXXXXXXXXXXXVPFVEENFVLHLPDSVLCKADCLGLCQKC 144 E+F Q +E N ++ LP LCK +C GLCQ+C Sbjct: 83 VHESFTNNPQ-----CEDDEIMLLKDEAIDVTEVIENNIIIELPIKRLCKENCKGLCQQC 137 Query: 145 GQNLNEGTCSCDNTVIDPRLAALKGFFTKQ 174 G NLN C C+ IDPRLA LK FF+ Q Sbjct: 138 GANLNFSKCKCEKD-IDPRLAKLKDFFSTQ 166 >B1II89.1 B1II89_CLOBK Ribosomal protein L32 family protein Length = 166 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 7/143 (4%) Query: 32 GRKDILAVAPLSVDLKALPADADCVNVVGKLNGNVDMLCARCLTEVNSKLNIPFAETFKW 91 G ++IL + ++D + D + + GKL+ +++ C+RCL + ++ E+F Sbjct: 31 GEEEILYLEAPTLD-GVVSISEDILTLNGKLSAEIELSCSRCLQKFKHHVDTEVHESFTN 89 Query: 92 LKQPXXXXXXXXXXXXXXXXXXXXVPFVEENFVLHLPDSVLCKADCLGLCQKCGQNLNEG 151 Q +E N ++ LP LCK +C GLCQ+CG NLN Sbjct: 90 NPQ-----CEDDEIMLLEDEVIDVTEVIENNIIIELPIKRLCKENCKGLCQQCGANLNFS 144 Query: 152 TCSCDNTVIDPRLAALKGFFTKQ 174 C C+ IDPRLA LK FF+ Q Sbjct: 145 KCKCEKD-IDPRLAKLKDFFSTQ 166 >C4Z918.1 C4Z918_9FIRM Predicted Zn-finger-like protein, possible nucleic acid binding Length = 173 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 32 GRKDILAVAPLSVDLKALPADADCVNVVGKLNGNVDMLCARCLTEVNSKLNIPFAETFKW 91 G IL P+S+ + + A V++ G ++ ++ + C+RCL EV + ++ +T K Sbjct: 31 GDYPILKKQPISLHISNVENAA--VHITGTVDIDIAIPCSRCLEEVPTNMHFDIDKTLK- 87 Query: 92 LKQPXXXXXXXXXXXXXXXXXXXXVPFVEENFVLHLPDSVLCKADCLGLCQKCGQNLNEG 151 + V +++ P VLCK DC G+C+ CG NLN+G Sbjct: 88 ITDGALVDEEMEETDYLIGFELDVDKLVYAEILVNWPMRVLCKDDCKGICKVCGMNLNKG 147 Query: 152 TCSCDNTVIDPRLAALKGFFTK 173 TCSCD+ V DPR+AA + F K Sbjct: 148 TCSCDSFVPDPRMAAFQDIFNK 169 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 889,460,651 Number of extensions: 29422309 Number of successful extensions: 56045 Number of sequences better than 1.0e-05: 150 Number of HSP's gapped: 56058 Number of HSP's successfully gapped: 150 Length of query: 176 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 50 Effective length of database: 1,873,648,313 Effective search space: 93682415650 Effective search space used: 93682415650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)