BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0068.p
         (117 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGL3.1 B3KGL3_9BACI Peptidase S16 lon domain protein                167   3e-40
Q5L0Z3.1 Q5L0Z3_GEOKA Hypothetical conserved protein                  134   2e-30
C3J0C8.1 C3J0C8_9BACI PDZ/DHR/GLGF domain protein                     134   2e-30
B7Y8Z2.1 B7Y8Z2_9BACI PDZ/DHR/GLGF domain protein                     134   2e-30
C4L5T2.1 C4L5T2_EXISA PDZ/DHR/GLGF domain protein                     133   4e-30

>B3KGL3.1 B3KGL3_9BACI Peptidase S16 lon domain protein
          Length = 346

 Score =  167 bits (423), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 95/112 (84%)

Query: 5   TVSFVDTDVGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIV 64
           T+ F DT++GGPSAGL+FT+EI NQLT GDL+KG+RVAGTGTI+  G VG IGGVKHKIV
Sbjct: 234 TIHFADTNIGGPSAGLIFTLEIYNQLTDGDLSKGYRVAGTGTIDKSGAVGPIGGVKHKIV 293

Query: 65  AADRKGAEIFFVPVKNYEEAKAKADQIGTDMKLIPVSTLAEALKYMQELPVK 116
           AADRK A+IFFVP KNY+EAK +AD+I TDMKLIPV  L +A+ Y++ELP K
Sbjct: 294 AADRKEADIFFVPQKNYDEAKKRADRIKTDMKLIPVEDLQDAVDYLEELPPK 345


>Q5L0Z3.1 Q5L0Z3_GEOKA Hypothetical conserved protein
          Length = 339

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 6/108 (5%)

Query: 13  VGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIVAADRKGAE 72
           +GGPSAGLMF++EI NQL   D+TKGH++AGTGTI+ DGNVG IGGV  K+VAADR+GAE
Sbjct: 230 IGGPSAGLMFSLEIYNQLVDEDITKGHKIAGTGTIDLDGNVGPIGGVSQKVVAADREGAE 289

Query: 73  IFF------VPVKNYEEAKAKADQIGTDMKLIPVSTLAEALKYMQELP 114
           +FF       P  NY EA   A +IGT MK++PV T  EA++Y++ +P
Sbjct: 290 VFFAPNEHGAPTSNYREAVRTAKKIGTHMKIVPVDTFDEAVRYLRSMP 337


>C3J0C8.1 C3J0C8_9BACI PDZ/DHR/GLGF domain protein
          Length = 339

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 6/108 (5%)

Query: 13  VGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIVAADRKGAE 72
           +GGPSAGLMF++EI NQL   D+TKGH++AGTGTI+ DGNVG IGGV  K+VAADR+GAE
Sbjct: 230 IGGPSAGLMFSLEIYNQLVDEDITKGHKIAGTGTIDLDGNVGPIGGVSQKVVAADREGAE 289

Query: 73  IFF------VPVKNYEEAKAKADQIGTDMKLIPVSTLAEALKYMQELP 114
           +FF       P  NY EA   A +IGT MK++PV T  EA++Y++ +P
Sbjct: 290 VFFAPNEHGAPTSNYREAVRTAKKIGTHMKIVPVDTFDEAVRYLRSMP 337


>B7Y8Z2.1 B7Y8Z2_9BACI PDZ/DHR/GLGF domain protein
          Length = 339

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 6/108 (5%)

Query: 13  VGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIVAADRKGAE 72
           +GGPSAGLMF++EI NQL   D+TKGH++AGTGTI+ DGNVG IGGV  K+VAADR+GAE
Sbjct: 230 IGGPSAGLMFSLEIYNQLVDEDITKGHKIAGTGTIDLDGNVGPIGGVSQKVVAADREGAE 289

Query: 73  IFF------VPVKNYEEAKAKADQIGTDMKLIPVSTLAEALKYMQELP 114
           +FF       P  NY EA   A +IGT MK++PV T  EA++Y++ +P
Sbjct: 290 VFFAPNEHGAPTSNYREAVRTAKKIGTHMKIVPVDTFDEAVRYLRSMP 337


>C4L5T2.1 C4L5T2_EXISA PDZ/DHR/GLGF domain protein
          Length = 330

 Score =  133 bits (335), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 83/104 (79%), Gaps = 1/104 (0%)

Query: 11  TDVGGPSAGLMFTMEIINQLTPGDLTKGHRVAGTGTIEADGNVGAIGGVKHKIVAADRKG 70
           T+VGGPSAGLMFT+EI +QLTPGDL  G R+AGTGT++ +GNVG IGG   KIVAAD + 
Sbjct: 226 TNVGGPSAGLMFTLEIYDQLTPGDLANGKRIAGTGTVDEEGNVGPIGGAWQKIVAADEEK 285

Query: 71  AEIFFVPV-KNYEEAKAKADQIGTDMKLIPVSTLAEALKYMQEL 113
           AE+FFVP   NYEEA    D++ +D++++PV T+ +A++Y++E+
Sbjct: 286 AEVFFVPAGSNYEEALESRDRLDSDIEVVPVKTVEDAIRYLEEM 329


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 681,546,978
Number of extensions: 26575230
Number of successful extensions: 54428
Number of sequences better than 1.0e-05: 719
Number of HSP's gapped: 54564
Number of HSP's successfully gapped: 719
Length of query: 117
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 33
Effective length of database: 2,269,330,943
Effective search space: 74887921119
Effective search space used: 74887921119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)