BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0067.p (235 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGL3.1 B3KGL3_9BACI Peptidase S16 lon domain protein 207 8e-52 C5D8K6.1 C5D8K6_9BACI PDZ/DHR/GLGF domain protein 96 3e-18 A4ILZ1.1 A4ILZ1_GEOTN YlbL protein 92 5e-17 B4BJG0.1 B4BJG0_9BACI PDZ/DHR/GLGF domain protein 92 5e-17 B7GGJ9.1 B7GGJ9_ANOFW Predicted secreted protein containing a PD... 89 2e-16 >B3KGL3.1 B3KGL3_9BACI Peptidase S16 lon domain protein Length = 346 Score = 207 bits (526), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 143/207 (69%), Gaps = 1/207 (0%) Query: 16 GFRATAYLFTFVVILYVAVFMNTPYIVYQPGSASEVAPLIHVQNADKDEKGTFMMTTVSA 75 G + YL V+LYV V+M TPY+VYQPGSA EV P+I+V+ D E+GTFMMTTVSA Sbjct: 9 GLKIALYLLLVGVMLYVVVYMPTPYLVYQPGSAEEVRPMINVEKGDPAEEGTFMMTTVSA 68 Query: 76 SYANVALLIASVFNSNSEIIRKETRLGNKTEQEYAAEQVYYMNSSQSFAVQAAYHAANIP 135 SYAN+ALL+ S FN N+E+++K ++G++++ EYAA QVYYMNSSQS A++AAY A I Sbjct: 69 SYANMALLMLSAFNPNAEVVKKAEKMGDQSKDEYAATQVYYMNSSQSSAMEAAYQEAGID 128 Query: 136 YKDVVDYLYVFSVP-GTGNREQFRPGDKIISVEGQAIPDPDALSALLSRRKIGDPVAVLL 194 Y Y++V S+ + N E FRPGDK+I ++GQ D + +++LLS + IG+ V+V L Sbjct: 129 YSIEPAYVFVMSISENSANAEHFRPGDKLIKIDGQPAEDNEKIASLLSGKSIGEEVSVEL 188 Query: 195 QREGXXXXXXXXXXXXXNQETGAVKPG 221 +R+G +++TGA +PG Sbjct: 189 ERKGKTVKEQVKLVSIKDEKTGAERPG 215 >C5D8K6.1 C5D8K6_9BACI PDZ/DHR/GLGF domain protein Length = 338 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 3/178 (1%) Query: 21 AYLFTFVVILYVAVFMNTPYIVYQPGSASEVAPLIHVQNADKDEKGTFMMTTVSASYAN- 79 A+ F +V L + +F+ PY V PG+A ++ PL+HV++ D D++GTFM+TTV AN Sbjct: 9 AFFFGVIVALLL-IFIKFPYYVTMPGTAQDLKPLVHVEHGDDDDEGTFMLTTVKMGRANA 67 Query: 80 VALLIASVFNSNSEIIRKETRLGNKTEQEYAAEQVYYMNSSQSFAVQAAYHAANIPYKDV 139 ++ +A V + +E + +T++EY Q+ M S+ A+ AY A P Sbjct: 68 ISYFLAHVRSFYELYPLEEIKQEGETDEEYTMRQLQLMEQSKEAAIAVAYKKAGKPVSYK 127 Query: 140 VDYLYVFSV-PGTGNREQFRPGDKIISVEGQAIPDPDALSALLSRRKIGDPVAVLLQR 196 +YV SV P Q + GD+II ++G+ + + + + +K GD V + R Sbjct: 128 AKGVYVMSVLPHMPAEGQLKVGDRIIKIDGKRMDTSEQMVQYIRTKKKGDKVHITFVR 185 >A4ILZ1.1 A4ILZ1_GEOTN YlbL protein Length = 339 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 3/179 (1%) Query: 21 AYLFTFVVILYVAVFMNTPYIVYQPGSASEVAPLIHVQNADKDEKGTFMMTTVSASYAN- 79 A F V+ ++ F+ PY V PGSA + PL+HV+N D+DE GTFM+TTV AN Sbjct: 8 AAFFFGAVLAFLLFFVKLPYYVMMPGSAQYLKPLVHVENGDRDE-GTFMLTTVRMGRANV 66 Query: 80 VALLIASVFNSNSEIIRKETRLGNKTEQEYAAEQVYYMNSSQSFAVQAAYHAANIPYKDV 139 VA L+A + +E + ++++EY Q+ M S+ A+ AY A P + Sbjct: 67 VAYLLAHIRPFYELHPVEEIKQEGESDKEYTMRQLELMEQSKEAAIVVAYQHAGKPVTNE 126 Query: 140 VDYLYVFSV-PGTGNREQFRPGDKIISVEGQAIPDPDALSALLSRRKIGDPVAVLLQRE 197 +YV SV P + GD+I +++GQ I + + + + ++ GD V V R+ Sbjct: 127 AKGVYVMSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRD 185 >B4BJG0.1 B4BJG0_9BACI PDZ/DHR/GLGF domain protein Length = 339 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 3/179 (1%) Query: 21 AYLFTFVVILYVAVFMNTPYIVYQPGSASEVAPLIHVQNADKDEKGTFMMTTVSASYAN- 79 A F V+ ++ F+ PY V PGSA + PL+HV+N D+DE GTFM+TTV AN Sbjct: 8 AAFFFGAVLAFLLFFVKLPYYVMMPGSAQYLKPLVHVENGDRDE-GTFMLTTVRMGRANV 66 Query: 80 VALLIASVFNSNSEIIRKETRLGNKTEQEYAAEQVYYMNSSQSFAVQAAYHAANIPYKDV 139 VA L+A + +E + ++++EY Q+ M S+ A+ AY A P + Sbjct: 67 VAYLLAHIRPFYELHPVEEIKQEGESDKEYTMRQLELMEQSKEAAIVVAYQHAGKPVTNE 126 Query: 140 VDYLYVFSV-PGTGNREQFRPGDKIISVEGQAIPDPDALSALLSRRKIGDPVAVLLQRE 197 +YV SV P + GD+I +++GQ I + + + + ++ GD V V R+ Sbjct: 127 AKGVYVMSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRD 185 >B7GGJ9.1 B7GGJ9_ANOFW Predicted secreted protein containing a PDZ domain Length = 337 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 3/173 (1%) Query: 28 VILYVAVFMNTPYIVYQPGSASEVAPLIHVQNADKDEKGTFMMTTVSASYANV-ALLIAS 86 ++L A F + PY V PG+A + PL+ VQ K EKG FM+TTV AN+ + ++A Sbjct: 15 LLLAFATFFHLPYYVTMPGTAEPLRPLVEVQGGYK-EKGQFMLTTVRMGQANLFSFMLAH 73 Query: 87 VFNSNSEIIRKETRLGNKTEQEYAAEQVYYMNSSQSFAVQAAYHAANIPYKDVVDYLYV- 145 V N E R ++++EY Q+ M +S+ A+ AY AN + +YV Sbjct: 74 VSKYNDLYRMDEVRQEGESDEEYTHRQLKMMENSKETAIAVAYKKANKSFSYRNKGVYVL 133 Query: 146 FSVPGTGNREQFRPGDKIISVEGQAIPDPDALSALLSRRKIGDPVAVLLQREG 198 + V G + GD++++++GQ + D D +S +K GD V + +R G Sbjct: 134 YVVDGMPASNVLKSGDQLVAIDGQRLNDADEFIQYVSGKKKGDRVQITYKRSG 186 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,212,046,614 Number of extensions: 44708931 Number of successful extensions: 108595 Number of sequences better than 1.0e-05: 225 Number of HSP's gapped: 108358 Number of HSP's successfully gapped: 225 Length of query: 235 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 104 Effective length of database: 1,826,543,238 Effective search space: 189960496752 Effective search space used: 189960496752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)