BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0066.p (316 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGL4.1 B3KGL4_9BACI Nucleoside recognition domain protein 257 1e-66 Q2RJY4.1 Q2RJY4_MOOTA Nucleoside recognition 176 3e-42 B1DJM7.1 B1DJM7_9BACL YlbJ 174 1e-41 C0ZFQ6.1 C0ZFQ6_BREBN Conserved hypothetical membrane protein 169 5e-40 Q65JZ8.1 Q65JZ8_BACLD YlbJ 168 6e-40 >B3KGL4.1 B3KGL4_9BACI Nucleoside recognition domain protein Length = 409 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 127/253 (50%), Positives = 176/253 (69%), Gaps = 7/253 (2%) Query: 35 SAPESSFAASLQGLKLWWNLVFPALLPFLILSEMLAASGAVHSLGVLLEPLMKRIFRLPG 94 SAPE +F A+LQ LKLWWN+VFP+LLPFL+L E+L A G H +GVLL+P+MK+IF+LPG Sbjct: 32 SAPEPAFQATLQALKLWWNIVFPSLLPFLVLVEILIAYGWAHGVGVLLDPMMKKIFKLPG 91 Query: 95 AGGWTLVLGMTAGFPAGAGAVQQLHKQGSITDKEAGRLASLAHYASPVTLLIVVGAAFLH 154 GGW L+ GMTAGFPAGA A +HKQG + +AGRLA+LAH+ +P+T+L+V+G LH Sbjct: 92 TGGWVLITGMTAGFPAGAQAAAGMHKQGELRAVDAGRLAALAHFCNPMTILVVIGTGLLH 151 Query: 155 NPASGYALLAIHWLAGLSAGYTSALIGGRSRIEAPPHLAGGDSKKAS------LPRRLYR 208 P +GY LL +HW++GL A +T +L EA A D+ + + + RR Sbjct: 152 KPEAGYLLLIVHWISGLLAAWTFSLFSKSPSAEAGKQGAPVDNARMNEWAKRPILRRAAS 211 Query: 209 AAVEAREQDGRSFGRLLGESVSSAVQNLMIVGGYMIIFAVVINI-AASMFPQLPQALAAS 267 AA++A +DGRSFG+LLGESV+ +VQ LM+ GG+++ FAV+ + + PQLP L Sbjct: 212 AALDAHRRDGRSFGKLLGESVTRSVQTLMMTGGFILFFAVLTRVLTGQLLPQLPSYLVPG 271 Query: 268 VLEIHLGAHALSA 280 +LE HL A ++S+ Sbjct: 272 ILEAHLAAQSISS 284 >Q2RJY4.1 Q2RJY4_MOOTA Nucleoside recognition Length = 407 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 140/244 (57%), Gaps = 5/244 (2%) Query: 13 LTSGAAPFXXXXXXXXXXXXXXSAPESSFAASLQGLKLWWNLVFPALLPFLILSEMLAAS 72 ++ G PF P+ F A+L+GL+ WW +V PALLPF I+S++ Sbjct: 8 ISRGITPFLTAVAVVILALAIVLFPQPVFQAALRGLRAWWEIVVPALLPFFIISQLFMGL 67 Query: 73 GAVHSLGVLLEPLMKRIFRLPGAGGWTLVLGMTAGFPAGAGAVQQLHKQGSITDKEAGRL 132 G VH LGVLLEP+M+ +F +PG+G + + +G T+G P A QL +Q +T E RL Sbjct: 68 GIVHFLGVLLEPVMRPLFNVPGSGAFVMAMGYTSGAPISAILTSQLRQQQLVTRVEGERL 127 Query: 133 ASLAHYASPVTLLIVVGAAFLHNPASGYALLAIHWLAGLSAGYTSALIGGRSRIEAPPHL 192 + ASP+ +L V LHNPA G AL H+ A L G G R+ P Sbjct: 128 ICFTNNASPLFMLGAVAVGMLHNPALGPALAGAHYGANLFLGVLFRFYGRRAPASPP--- 184 Query: 193 AGGDSKKASLPRRLYRAAVEAREQDGRSFGRLLGESVSSAVQNLMIVGGYMIIFAVVINI 252 G+ SLPRR +RA ++A+++DGRS G+LLG++VS + Q L+ +GG++ +F+V+I + Sbjct: 185 --GNHPLLSLPRRAWRAMIQAQQRDGRSLGQLLGDAVSHSFQTLITIGGFITLFSVIIQV 242 Query: 253 AASM 256 A + Sbjct: 243 AGML 246 >B1DJM7.1 B1DJM7_9BACL YlbJ Length = 410 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 139/221 (62%), Gaps = 8/221 (3%) Query: 37 PESSFAASLQGLKLWWNLVFPALLPFLILSEMLAASGAVHSLGVLLEPLMKRIFRLPGAG 96 P+ +F ASLQGL +WWN+VFP LLPFL+L E++AA G +H +G LL PLM+ +F+LPG Sbjct: 22 PDEAFQASLQGLTIWWNIVFPGLLPFLVLFELIAAFGLIHGIGALLRPLMRSLFKLPGEA 81 Query: 97 GWTLVLGMTAGFPAGAGAVQQLHKQGSITDKEAGRLASLAHYASPVTLLIVVGAAFLHNP 156 L+ G +G AGA A L + +T E RL +L+H +P+ +L+V+GA FLH P Sbjct: 82 ALPLLFGWLSGHQAGAEATAALRRDQLVTRGEGQRLLALSHMPNPLFMLVVIGAGFLHRP 141 Query: 157 ASGYALLAIHWLAGL-SAGYTSALIGGRSRIEAPPH-LAGGDSKKAS--LPRRLYRAAVE 212 G + + WL+ L +AG+ S SR +P H L + AS L + A Sbjct: 142 ELGLFIALMVWLSALCTAGWISLF----SRRRSPSHQLNAPHTAVASRGLMENVANAITT 197 Query: 213 AREQDGRSFGRLLGESVSSAVQNLMIVGGYMIIFAVVINIA 253 +R++DGRSFG++LG++VSS VQ L++VGG+MI AV +A Sbjct: 198 SRDRDGRSFGKVLGDAVSSGVQKLLVVGGFMIFAAVAARLA 238 >C0ZFQ6.1 C0ZFQ6_BREBN Conserved hypothetical membrane protein Length = 410 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 148/263 (56%), Gaps = 28/263 (10%) Query: 38 ESSFAASLQGLKLWWNLVFPALLPFLILSEMLAASGAVHSLGVLLEPLMKRIFRLPGAGG 97 + SF A+++GLK+WW +VFP+ LPF++LSE+L G VH +GVLLEPLM+ +F +PG GG Sbjct: 28 QISFEAAVRGLKIWWEVVFPSTLPFIVLSEVLMGLGVVHFVGVLLEPLMRPLFNVPGTGG 87 Query: 98 WTLVLGMTAGFPAGAGAVQQLHKQGSITDKEAGRLASLAHYASPVTLLIVVGAAFLHNPA 157 + L +G ++G+P A +L QG++T E RL S P+ ++ V F H+ Sbjct: 88 FVLAMGFSSGYPVAAKLTTRLRLQGNVTKAEGERLVSFTTTGDPLFVMGAVAIGFFHSEQ 147 Query: 158 SGYALLAIHWLAGLSAGYTSALIGGRSRIEAPPHLAGGDSKKAS--LPRRLYRAAVEARE 215 G L H+L ++ L+G R AP + +K S LP R +A AR Sbjct: 148 MGVILALTHYL-------SAVLMGVIYRFHAPFAITSAPLEKNSLPLPLRALQAMHRARI 200 Query: 216 QDGRSFGRLLGESVSSAVQNLMIVGGYMIIFAVVINIAASMF------------------ 257 +D R FG+L+GE+V SA+ L+++GG++I+F+V+I + +++ Sbjct: 201 RDRRPFGKLMGEAVQSALNTLLMIGGFIIVFSVLIQLFSTIHLTQIISTLLSIFLGPFGF 260 Query: 258 -PQLPQALAASVLEIHLGAHALS 279 P QA+ A + E+ LGA A S Sbjct: 261 PPAFSQAIVAGLFEVTLGAQAAS 283 >Q65JZ8.1 Q65JZ8_BACLD YlbJ Length = 406 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 100/270 (37%), Positives = 149/270 (55%), Gaps = 27/270 (10%) Query: 37 PESSFAASLQGLKLWWNLVFPALLPFLILSEMLAASGAVHSLGVLLEPLMKRIFRLPGAG 96 P+ SF AS GL +WW +VFP+LLPF ILSE+L G V +G+LLEP M+ +FR+PG G Sbjct: 26 PQESFDASKSGLAMWWEVVFPSLLPFFILSELLIGFGVVRFVGLLLEPFMRPVFRVPGVG 85 Query: 97 GWTLVLGMTAGFPAGAGAVQQLHKQGSITDKEAGRLASLAHYASPVTLLIVVGAAFLHNP 156 G+ L +GM +G PAGA +L ++ I+ EA RLAS + ++P+ + V F HNP Sbjct: 86 GFVLAMGMASGNPAGAKLTSRLRQERQISRVEAERLASFTNSSNPLFIFGAVAVGFFHNP 145 Query: 157 ASGYALLAIHWLAGLSAGYTSALIGGRSRIEAPPHLAGGDSKKASLP--RRLYRAAVEAR 214 + G L A H+L + G T G + KK +P + +A +AR Sbjct: 146 SLGVVLAAAHYLGNFAVGLTMRTYGRKEENRT------AVRKKLPVPSIKEALKALHQAR 199 Query: 215 EQDGRSFGRLLGESVSSAVQNLMIVGGYMIIFAVVINIAASMFP---------------Q 259 ++ R G+LL ++V S+VQ L++VGG++I+F+V NI + M Q Sbjct: 200 LEEKRPLGKLLSDAVISSVQTLLMVGGFIILFSVFNNILSVMHITDILSHATRMILTALQ 259 Query: 260 LP----QALAASVLEIHLGAHALSAGTSGL 285 LP + L + + EI LG+ +SA + L Sbjct: 260 LPGDFDKPLLSGLFEITLGSKLVSATDAAL 289 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,734,058,371 Number of extensions: 69493843 Number of successful extensions: 193212 Number of sequences better than 1.0e-05: 188 Number of HSP's gapped: 193060 Number of HSP's successfully gapped: 188 Length of query: 316 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 181 Effective length of database: 1,788,859,178 Effective search space: 323783511218 Effective search space used: 323783511218 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)