BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0064.p (173 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGL5.1 B3KGL5_9BACI Pantetheine-phosphate adenylyltransferase ... 265 1e-69 B1DJM8.1 B1DJM8_9BACL Pantetheine-phosphate adenylyltransferase ... 217 4e-55 B4AEC2.1 B4AEC2_BACPU Pantetheine-phosphate adenylyltransferase ... 207 3e-52 Q9K9Q6.1 COAD_BACHD Phosphopantetheine adenylyltransferase EC=2.... 206 5e-52 A8FCW1.1 COAD_BACP2 Phosphopantetheine adenylyltransferase EC=2.... 206 6e-52 >B3KGL5.1 B3KGL5_9BACI Pantetheine-phosphate adenylyltransferase EC=2.7.7.3 Length = 171 Score = 265 bits (677), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 123/156 (78%), Positives = 142/156 (91%) Query: 9 RVAIYPGTFDPVTMGHMDIIQRAAKQFDRLIVAVLNNLSKNPLFSVEERTDLLRQATQDI 68 RVA+YPG+FDPVTMGHMDII RA+KQFD LIVAVLNNLSKNPLF+V+ER DLLRQAT + Sbjct: 10 RVAVYPGSFDPVTMGHMDIITRASKQFDLLIVAVLNNLSKNPLFTVDERKDLLRQATAHL 69 Query: 69 PNVEVDSFRDLLVNYVRQKDAQVIVRGIRTVTDFEYELQNASINHNLDPDAETIFMMTNP 128 PNVE+DSFRDLL NY+RQK+AQVIVRGIRTVTDFEYELQ AS NH L+PDAETIFMMT+P Sbjct: 70 PNVEIDSFRDLLANYIRQKNAQVIVRGIRTVTDFEYELQLASTNHKLNPDAETIFMMTHP 129 Query: 129 KYSYLSSSVVKEIAHFGGNVSDFVTPEVELAMKHKF 164 KYS+LSSS+VKEIAHF G+ +D V+PEV+ A++ KF Sbjct: 130 KYSFLSSSLVKEIAHFNGDTTDLVSPEVDAALRRKF 165 >B1DJM8.1 B1DJM8_9BACL Pantetheine-phosphate adenylyltransferase EC=2.7.7.3 Length = 170 Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 101/157 (64%), Positives = 129/157 (82%) Query: 9 RVAIYPGTFDPVTMGHMDIIQRAAKQFDRLIVAVLNNLSKNPLFSVEERTDLLRQATQDI 68 RVA+YPG+FDP T+GH+DII+R+AKQFD +IVAVLNN SK+P+F+++ER ++LR+ T+DI Sbjct: 8 RVAVYPGSFDPPTLGHLDIIRRSAKQFDHVIVAVLNNTSKSPMFTLDERKEMLREITRDI 67 Query: 69 PNVEVDSFRDLLVNYVRQKDAQVIVRGIRTVTDFEYELQNASINHNLDPDAETIFMMTNP 128 PNV +DSFRDLLV +++ + A VIVRGIR+VTDFEYEL AS N LD + ETIFMMTNP Sbjct: 68 PNVSIDSFRDLLVRFMKSRKASVIVRGIRSVTDFEYELTLASTNQLLDEEIETIFMMTNP 127 Query: 129 KYSYLSSSVVKEIAHFGGNVSDFVTPEVELAMKHKFK 165 KYSYLSSS+VKEIA FGG V + V +E + K+K Sbjct: 128 KYSYLSSSIVKEIAMFGGPVHELVPAPIESRLVEKYK 164 >B4AEC2.1 B4AEC2_BACPU Pantetheine-phosphate adenylyltransferase EC=2.7.7.3 Length = 160 Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 94/156 (60%), Positives = 126/156 (80%) Query: 10 VAIYPGTFDPVTMGHMDIIQRAAKQFDRLIVAVLNNLSKNPLFSVEERTDLLRQATQDIP 69 +A+ PG+FDPVT+GH+DII+R AK FD + V VLNN SK PLF+VEER +L+R+AT+D+P Sbjct: 4 IAVCPGSFDPVTLGHLDIIKRGAKIFDEVYVCVLNNSSKKPLFTVEERCELIREATKDLP 63 Query: 70 NVEVDSFRDLLVNYVRQKDAQVIVRGIRTVTDFEYELQNASINHNLDPDAETIFMMTNPK 129 N++V+SF LLV+Y +QK+A+VI+RG+R VTDFEYE+Q S+N L+ D ET FMMTN + Sbjct: 64 NIKVESFHGLLVDYAKQKEAKVILRGLRAVTDFEYEMQGTSMNKVLNDDIETFFMMTNNQ 123 Query: 130 YSYLSSSVVKEIAHFGGNVSDFVTPEVELAMKHKFK 165 YS+LSSS+VKE+A + G+V D V EVE A+ KFK Sbjct: 124 YSFLSSSIVKEVAKYDGSVKDLVPKEVEEALIEKFK 159 >Q9K9Q6.1 COAD_BACHD Phosphopantetheine adenylyltransferase EC=2.7.7.3 Length = 165 Score = 206 bits (525), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 96/155 (61%), Positives = 124/155 (80%) Query: 10 VAIYPGTFDPVTMGHMDIIQRAAKQFDRLIVAVLNNLSKNPLFSVEERTDLLRQATQDIP 69 +A+ PG+FDPVT+GH+DIIQR A FD +IVAVL+N +K PLFSVEER +LL++AT+ IP Sbjct: 4 IAVCPGSFDPVTLGHLDIIQRGANVFDEVIVAVLHNRNKVPLFSVEERLELLKKATEHIP 63 Query: 70 NVEVDSFRDLLVNYVRQKDAQVIVRGIRTVTDFEYELQNASINHNLDPDAETIFMMTNPK 129 NV +DSF LL++YV+QK A+ I+RG+R V+DFEYE+Q ASIN L PD ET FMMT+ + Sbjct: 64 NVTIDSFNGLLIDYVKQKQAKAIIRGLRAVSDFEYEMQAASINKKLGPDVETFFMMTSNQ 123 Query: 130 YSYLSSSVVKEIAHFGGNVSDFVTPEVELAMKHKF 164 YSYLSSS+VKE+A + +VSD V P V A+K KF Sbjct: 124 YSYLSSSIVKEVAKYEADVSDIVPPVVAEALKAKF 158 >A8FCW1.1 COAD_BACP2 Phosphopantetheine adenylyltransferase EC=2.7.7.3 Length = 160 Score = 206 bits (524), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 94/156 (60%), Positives = 125/156 (80%) Query: 10 VAIYPGTFDPVTMGHMDIIQRAAKQFDRLIVAVLNNLSKNPLFSVEERTDLLRQATQDIP 69 +A+ PG+FDPVT+GH+DII+R AK FD + V VLNN SK PLF+VEER +L+RQAT+D+P Sbjct: 4 IAVCPGSFDPVTLGHLDIIKRGAKIFDEVYVCVLNNSSKKPLFTVEERCELIRQATKDLP 63 Query: 70 NVEVDSFRDLLVNYVRQKDAQVIVRGIRTVTDFEYELQNASINHNLDPDAETIFMMTNPK 129 N++V+SF LLV+Y +QK+A+VI+RG+R VTDFEYE+Q S+N L+ D ET FMMTN + Sbjct: 64 NIKVESFHGLLVDYAKQKEAKVILRGLRAVTDFEYEMQGTSMNKVLNDDIETFFMMTNNQ 123 Query: 130 YSYLSSSVVKEIAHFGGNVSDFVTPEVELAMKHKFK 165 YS+LSSS+VKE+A + G+V V EVE A+ KFK Sbjct: 124 YSFLSSSIVKEVAKYDGSVKGLVPKEVEEALIEKFK 159 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 950,666,703 Number of extensions: 34878100 Number of successful extensions: 98778 Number of sequences better than 1.0e-05: 1412 Number of HSP's gapped: 98237 Number of HSP's successfully gapped: 1412 Length of query: 173 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 47 Effective length of database: 1,873,648,313 Effective search space: 88061470711 Effective search space used: 88061470711 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)