BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0057.p
         (182 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9LCR3.1 Q9LCR3_PAEPO CwlV                                             57   7e-07
B1DI23.1 B1DI23_9BACL Copper amine oxidase domain protein              55   2e-06

>Q9LCR3.1 Q9LCR3_PAEPO CwlV
          Length = 499

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 18  VWPAPAV-HGAEPKVIFSVNNEVLQFPANEVPLITGNVLMVPIRKVGKALGLEVVYIQKE 76
           +W  P   H A       ++++ L  P+     + G   MVP+R + + LG +V + Q+ 
Sbjct: 14  MWAVPGYGHAASSGTQIYLDDQQLSVPSGAKAQVIGGSTMVPLRVISENLGYDVTWKQQA 73

Query: 77  KKLELSRNGQQLDIKLGTNEAVINGKDKLAINGKVILRGNLVYVPFSLF-NAMGLISSYD 135
           + + + ++   + + +G+  A +NG D ++++   +LR N   VP       MGL   +D
Sbjct: 74  RTITIEKDSTSIRMIIGSKTATVNGSD-ISLDASPLLRSNYALVPLRFIGEQMGLDVKWD 132

Query: 136 SAA 138
           S++
Sbjct: 133 SSS 135


>B1DI23.1 B1DI23_9BACL Copper amine oxidase domain protein
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 7/114 (6%)

Query: 40  LQFPANEVPLITGNVLMVPIRKVGKALGLE-VVYIQKEKKL--ELSRNGQ--QLDIKLGT 94
           ++ P +  P+I   V  VP R +G+ALGL+ VV+ +K + +  E S+ G+  +L +K+G+
Sbjct: 53  VELPFDSPPIIVKGVTFVPFRTIGEALGLQKVVWDEKTQTVTAEGSKQGKAVKLSMKIGS 112

Query: 95  NEAVINGKDKLAINGKVILRGNLVYVPFSLFNA-MGLISSYDSAAGQAAVNSPQ 147
             AV+NG + + +  + ++R N V +P S F+   G    +  +     + SPQ
Sbjct: 113 GTAVVNGTN-VKLPAEPMMRNNRVLIPLSFFSTQFGAQVGWSQSTNTVTIKSPQ 165


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 940,501,581
Number of extensions: 36033894
Number of successful extensions: 63428
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 63444
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 55
Effective length of database: 1,864,227,298
Effective search space: 102532501390
Effective search space used: 102532501390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)