BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0049.p
         (124 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKL4.1 B3KKL4_9BACI Regulatory protein GntR HTH                     182   1e-44
B1DBU2.1 B1DBU2_9BACL Transcriptional regulator, GntR family          172   6e-42
C2ZLS7.1 C2ZLS7_BACCE Transcriptional regulator, GntR                 159   1e-37
C2Z562.1 C2Z562_BACCE Transcriptional regulator, GntR                 159   1e-37
A7GMP5.1 A7GMP5_BACCN Regulatory protein GntR HTH                     158   1e-37

>B3KKL4.1 B3KKL4_9BACI Regulatory protein GntR HTH
          Length = 121

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 102/119 (85%)

Query: 1   MTIEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELER 60
           M+IEFDNN PIYLQIM Y+K EI+ GKL PGDKIPSVRELA+ELQINPNTVQRTFQELER
Sbjct: 1   MSIEFDNNLPIYLQIMTYLKKEIIIGKLLPGDKIPSVRELASELQINPNTVQRTFQELER 60

Query: 61  ETIVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIE 119
           E IVETRRG+GRYVT  E  I+ IKKEMA D+L+RFIRGMQELGF+ ++I+  V + ++
Sbjct: 61  EGIVETRRGLGRYVTSEESKIMEIKKEMAGDLLERFIRGMQELGFKDQDIITIVEDAVK 119


>B1DBU2.1 B1DBU2_9BACL Transcriptional regulator, GntR family
          Length = 131

 Score =  172 bits (437), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 103/119 (86%)

Query: 1   MTIEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELER 60
           MTI FDNN PIY+QIMNY+K +I+TG+L PGDKI SVR+LA ELQINPNT+QRTFQELER
Sbjct: 1   MTIVFDNNMPIYIQIMNYVKKQIITGRLNPGDKIESVRDLALELQINPNTIQRTFQELER 60

Query: 61  ETIVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIE 119
           E IVETRRG+GR+VT  E TI+ IKKEMA ++L+RF++GM+ELGF+ ++I+A V + ++
Sbjct: 61  EGIVETRRGLGRFVTSRESTIMQIKKEMAGELLERFVQGMRELGFEKDDIVAIVKDAVK 119


>C2ZLS7.1 C2ZLS7_BACCE Transcriptional regulator, GntR
          Length = 126

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 94/121 (77%)

Query: 1   MTIEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELER 60
           M IEF  N PIY+Q+M Y+K EIVTG L PGDKIPSVRELA+ELQ+NPNT+QRTFQELER
Sbjct: 1   MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELER 60

Query: 61  ETIVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIET 120
           + +V TRRGMGRYVT  E+ I+ ++K+MA+++L  FI GM  LGF  EEIL  +  ++  
Sbjct: 61  DGVVVTRRGMGRYVTNEEEKIMELRKDMARELLHSFIDGMDNLGFSEEEILTILRSSLHE 120

Query: 121 R 121
           +
Sbjct: 121 K 121


>C2Z562.1 C2Z562_BACCE Transcriptional regulator, GntR
          Length = 126

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 94/121 (77%)

Query: 1   MTIEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELER 60
           M IEF  N PIY+Q+M Y+K EIVTG L PGDKIPSVRELA+ELQ+NPNT+QRTFQELER
Sbjct: 1   MKIEFSPNTPIYIQVMEYIKKEIVTGHLLPGDKIPSVRELASELQVNPNTIQRTFQELER 60

Query: 61  ETIVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIET 120
           + +V TRRGMGRYVT  E+ I+ ++K+MA+++L  FI GM  LGF  EEIL  +  ++  
Sbjct: 61  DGVVVTRRGMGRYVTNEEEKIMELRKDMARELLHSFIDGMDNLGFSEEEILTILRSSLHE 120

Query: 121 R 121
           +
Sbjct: 121 K 121


>A7GMP5.1 A7GMP5_BACCN Regulatory protein GntR HTH
          Length = 126

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 94/121 (77%)

Query: 1   MTIEFDNNQPIYLQIMNYMKGEIVTGKLKPGDKIPSVRELAAELQINPNTVQRTFQELER 60
           M IEF  N PIY+Q+M Y+K EI TG L  GDKIPSVRELA+ELQ+NPNT+QRTFQELER
Sbjct: 1   MKIEFSPNIPIYIQVMEYIKKEIATGHLSLGDKIPSVRELASELQVNPNTIQRTFQELER 60

Query: 61  ETIVETRRGMGRYVTGNEQTILTIKKEMAQDVLDRFIRGMQELGFQSEEILAAVAENIET 120
           E IV TRRGMGRYVT   + I+ ++KEMA+++LD FI GM  LGF  +EIL+ +  ++E 
Sbjct: 61  EGIVITRRGMGRYVTSEGEKIMELRKEMAKELLDSFINGMDHLGFSGDEILSILRSSLED 120

Query: 121 R 121
           +
Sbjct: 121 K 121


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 665,930,436
Number of extensions: 24551868
Number of successful extensions: 100795
Number of sequences better than 1.0e-05: 1992
Number of HSP's gapped: 100923
Number of HSP's successfully gapped: 1992
Length of query: 124
Length of database: 3,060,696,203
Length adjustment: 90
Effective length of query: 34
Effective length of database: 2,212,804,853
Effective search space: 75235365002
Effective search space used: 75235365002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)