BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0048.p (241 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBU1.1 B1DBU1_9BACL Putative uncharacterized protein 169 2e-40 B3KKL6.1 B3KKL6_9BACI Putative ABC-2 type transport system perme... 101 5e-20 P54593.1 YHCI_BACSU Uncharacterized protein yhcI 95 5e-18 A7Z2S4.1 A7Z2S4_BACA2 YhcI 95 5e-18 B1D5Q3.1 B1D5Q3_9BACL Putative uncharacterized protein 89 2e-16 >B1DBU1.1 B1DBU1_9BACL Putative uncharacterized protein Length = 252 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 145/245 (59%), Gaps = 4/245 (1%) Query: 1 VLNEWLKLSKKSTFFIAYGLMIVMPLVIGYVVHSVAGDMFSSGPQFAAEMLLPSGIGQIL 60 ++NEWLKLSKK +FF+AY ++ V+ ++ + + ++ D +S FA ++ GQ++ Sbjct: 8 LINEWLKLSKKKSFFVAYAILAVVFAILAFAFYKLSPDGLNSTVDFATGTIMLQAAGQLV 67 Query: 61 SILVIIGTAGIVAKEYSQGTIKFLLIRARSRTAILASKFVTVLMXXXXXXXXXXXXXXXX 120 +L ++ AG V +EY GTIKFLLIRA+SR ILASK++ ++ Sbjct: 68 PVLAVLAAAGSVTQEYRYGTIKFLLIRAQSRHKILASKYIVSVLYALTLVVTAAVFAVVA 127 Query: 121 GMLWFXXXXXXXXXXDILTSVLYNSVYMVMFATLAFMMGILTTSTGVSIGVSMFALMISN 180 G + + D L+++ +VY ++F TL FM+GILT S G +IG+ +F++M+ + Sbjct: 128 GYIVYGGGAGESTWTDFLSNIASLAVYSIIFVTLTFMIGILTKSNGAAIGIGIFSMMVGS 187 Query: 181 LVIF----KDFYKYVLFPNLNLAAYEGGGAPLPGMTLGFSILMLAVYFLLFLVTGFMVFR 236 L++ KY+LF N +L+ Y P+ GMTL FSI++L VY LFL F VF+ Sbjct: 188 LLVMLLSRYAITKYLLFANTDLSVYRSDSVPVEGMTLAFSIVILLVYMALFLSVSFAVFK 247 Query: 237 RRDVA 241 +RD+A Sbjct: 248 KRDIA 252 >B3KKL6.1 B3KKL6_9BACI Putative ABC-2 type transport system permease protein Length = 163 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 1/154 (0%) Query: 1 VLNEWLKLSKKSTFFIAYGLMIVMPLVIGYVVHSVAGDMFSSGPQFAAEMLLPSGIGQIL 60 V NEWLK+ KK +FF+ Y L+ M + ++++ + D S+G +FA + G+GQ+L Sbjct: 8 VWNEWLKMFKKRSFFLPYVLLAGMVIFTAFLLYKFS-DGGSTGYEFAQIAVTTKGMGQVL 66 Query: 61 SILVIIGTAGIVAKEYSQGTIKFLLIRARSRTAILASKFVTVLMXXXXXXXXXXXXXXXX 120 ++L I+ TAG VAKE+S GTIK LLIRA+SRT ILASK+V VL+ Sbjct: 67 TLLAIVVTAGAVAKEHSMGTIKLLLIRAQSRTKILASKYVAVLIYILTLVAFMFAVAVLT 126 Query: 121 GMLWFXXXXXXXXXXDILTSVLYNSVYMVMFATL 154 G + F D+L + N VY +++ TL Sbjct: 127 GQITFGMDVGSVTLGDVLIGAVNNLVYTIVYVTL 160 >P54593.1 YHCI_BACSU Uncharacterized protein yhcI Length = 313 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 21/201 (10%) Query: 62 ILVIIGTAGIVAKEYSQGTIKFLLIRARSRTAILASKFVTVLMXXXXXXXXXXXXXXXXG 121 + II AGIVA E++ GTIK L+IR SR IL SK++TVL+ G Sbjct: 112 LFTIIIAAGIVANEFNWGTIKLLMIRPLSRFQILMSKYITVLLFGLLLLLILFIGSTLLG 171 Query: 122 MLWFXXXXXXXXXXDIL----------------TSVLYNSVYMVMFATLAFMMGILTTST 165 +++F ++ T+ L SV +M AT+AFM+ + ++ Sbjct: 172 LIFFGTGGETAANIHLIYKDGHVIEQNMMGHLATTYLSESVSALMVATMAFMLSAVFRNS 231 Query: 166 GVSIGVSMFALMI----SNLVIFK-DFYKYVLFPNLNLAAYEGGGAPLPGMTLGFSILML 220 +++G S+F L+ + + K D+ KY+LF N++L Y G + GMT+ FS++ML Sbjct: 232 SLAVGFSIFLLVAGTTATAFIAAKFDWAKYILFANVDLTQYVDGTPLIKGMTMTFSLVML 291 Query: 221 AVYFLLFLVTGFMVFRRRDVA 241 A+YF++FL+ F +F +RD+A Sbjct: 292 AIYFIIFLLLAFGIFMKRDIA 312 >A7Z2S4.1 A7Z2S4_BACA2 YhcI Length = 315 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 35/239 (14%) Query: 24 MPLVIGYVVHSVAGDMFSSGPQFAAEMLLPSGIGQILSILVIIGTAGIVAKEYSQGTIKF 83 +P GY V S D ++ M + +G+ II AGIVA E++ GTIK Sbjct: 90 IPEDTGYTVWSYVAD--------SSMMTVLTGL------FTIIIAAGIVANEFNWGTIKL 135 Query: 84 LLIRARSRTAILASKFVTVLMXXXXXXXXXXXXXXXXGMLWFXXXXXXXXXXDIL----- 138 L IR SR IL SK++TVL+ G+++F ++ Sbjct: 136 LAIRPLSRFQILLSKYMTVLLFGLLMLVILFAGSALLGLVFFGTGGDTAADVHLVYKDGQ 195 Query: 139 -----------TSVLYNSVYMVMFATLAFMMGILTTSTGVSIGVSMFALMISN-----LV 182 + +Y SV M AT+AFM+ + ++ +++G S+F L++ N L Sbjct: 196 VFEQNIIAFLAKTYVYESVSAFMLATMAFMLSAVFRNSSLAVGFSIFLLVMGNTATVFLA 255 Query: 183 IFKDFYKYVLFPNLNLAAYEGGGAPLPGMTLGFSILMLAVYFLLFLVTGFMVFRRRDVA 241 ++ KY+LF N +L+ Y G + GMT+ FS++ML +YF++FL F VF +RD+A Sbjct: 256 TKFEWTKYILFANTDLSQYMNGTPLVEGMTMTFSVVMLVIYFVIFLALAFGVFLKRDIA 314 >B1D5Q3.1 B1D5Q3_9BACL Putative uncharacterized protein Length = 272 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 135/263 (51%), Gaps = 29/263 (11%) Query: 1 VLNEWLKLSKKSTFFIAYGLMIVMPL---VIGYVVHSVAGDMFSSGPQFAAEMLLPSGIG 57 V NE +K+ ++ ++ G+++ + +IGY V ++ E+++ + Sbjct: 16 VQNENMKIYRRPRTYVMLGILLALIAAISIIGYFVDQ--NHTTAAWSMIMTEVMIAYLLI 73 Query: 58 QILSILVIIGTAGIVAKEYSQGTIKFLLIRARSRTAILASKFVTVLMXXXXXXXXXXXXX 117 + +I II ++G VA+E++ GTIK LLIR +R+ IL SK++ VL+ Sbjct: 74 TVFTI--IIASSG-VAEEFTSGTIKLLLIRPWTRSKILLSKYIAVLLYALGMVIVMLLFT 130 Query: 118 XXXGMLWFXXXXXXXXXXDILTSVLYNSV--YMVMFA-----------TLAFMMGILTTS 164 M+ F DI++ ++ S+ Y++ +A TLAFM+ ++ S Sbjct: 131 IVLNMILFDTSDNTAT--DIISPLVSGSIAAYLIKYALLKYVSLIVTTTLAFMLATVSRS 188 Query: 165 TGVSIGVSMFALMISN-----LVIFK-DFYKYVLFPNLNLAAYEGGGAPLPGMTLGFSIL 218 ++IG+S+F ++ N L K + Y+LF +L+L Y G+TLGFSI Sbjct: 189 GALAIGLSLFLILGVNSFTPLLAALKYKWADYILFIHLDLTQYLNDTPMRDGLTLGFSIA 248 Query: 219 MLAVYFLLFLVTGFMVFRRRDVA 241 +LAVY+ +F+ + VF++RDVA Sbjct: 249 VLAVYYAIFMALAWYVFKKRDVA 271 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.144 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,114,664,459 Number of extensions: 39256196 Number of successful extensions: 165466 Number of sequences better than 1.0e-05: 277 Number of HSP's gapped: 164984 Number of HSP's successfully gapped: 277 Length of query: 241 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 109 Effective length of database: 1,817,122,223 Effective search space: 198066322307 Effective search space used: 198066322307 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)