BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0043.p (233 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9E2G6.1 B9E2G6_CLOK1 Putative uncharacterized protein 175 4e-42 A5N928.1 A5N928_CLOK5 Putative uncharacterized protein 175 4e-42 B3K8C1.1 B3K8C1_9BACI Putative uncharacterized protein 169 3e-40 A6TUR1.1 A6TUR1_ALKMQ Putative uncharacterized protein 67 2e-09 C1TDP1.1 C1TDP1_9FIRM Putative uncharacterized protein 66 2e-09 >B9E2G6.1 B9E2G6_CLOK1 Putative uncharacterized protein Length = 225 Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 128/235 (54%), Gaps = 12/235 (5%) Query: 1 MNKLSCEIVRDLLPLYYDEVCSADTRKSIEAHLATCEHCTADLHKLQQSSRLPFEVIEKN 60 MN +SC++++DLLPLY+D+VCS D++K +E HL CE C +L + ++ F+ + Sbjct: 1 MNNISCKVIKDLLPLYHDKVCSDDSKKIVEEHLTFCEDCQRELKNIDTEIKIAFKNNTMD 60 Query: 61 KQESTALANFKGYWHXXXXXXXXXXXXXXTTICGVIGLGYVGLFRWNITQVPSSVIKISD 120 ++++ + N W T Y+GLFRWNI V + VIKI+D Sbjct: 61 RKDTNVIKNISKLWKKSKVKSFIKGLIYATLFFAFAAGIYIGLFRWNIINVSTDVIKITD 120 Query: 121 VSLLKDGKIAYHVKLTDGYRVNQISGKSEGNGNFYITPMRPVF--KTKTDAELGLGNSYE 178 V L DG+IAYHVKL DGY +NQ + ++ GNFY+ P+R V K K D GL + Y Sbjct: 121 VCRLSDGRIAYHVKLIDGYILNQCNFNTDKKGNFYVKPVRSVIKQKQKKDTLAGLADMY- 179 Query: 179 LIDLEQLNANHTDPSTQIKAIYYGPKDDNPILIWKQGMQLPPATDAVEAQFRDRD 233 + Q KA+Y+G DN ILIWK+ M LP A+ VE F RD Sbjct: 180 --------YDFNPKEKQSKALYWGTYKDN-ILIWKEDMPLPKASQEVEDMFNIRD 225 >A5N928.1 A5N928_CLOK5 Putative uncharacterized protein Length = 225 Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 128/235 (54%), Gaps = 12/235 (5%) Query: 1 MNKLSCEIVRDLLPLYYDEVCSADTRKSIEAHLATCEHCTADLHKLQQSSRLPFEVIEKN 60 MN +SC++++DLLPLY+D+VCS D++K +E HL CE C +L + ++ F+ + Sbjct: 1 MNNISCKVIKDLLPLYHDKVCSDDSKKIVEEHLTFCEDCQRELKNIDTEIKIAFKNNTMD 60 Query: 61 KQESTALANFKGYWHXXXXXXXXXXXXXXTTICGVIGLGYVGLFRWNITQVPSSVIKISD 120 ++++ + N W T Y+GLFRWNI V + VIKI+D Sbjct: 61 RKDTNVIKNISKLWKKSKVKSFIKGLIYATLFFAFAAGIYIGLFRWNIINVSTDVIKITD 120 Query: 121 VSLLKDGKIAYHVKLTDGYRVNQISGKSEGNGNFYITPMRPVF--KTKTDAELGLGNSYE 178 V L DG+IAYHVKL DGY +NQ + ++ GNFY+ P+R V K K D GL + Y Sbjct: 121 VCRLSDGRIAYHVKLIDGYILNQCNFNTDKKGNFYVKPVRSVIKQKQKKDTLAGLADMY- 179 Query: 179 LIDLEQLNANHTDPSTQIKAIYYGPKDDNPILIWKQGMQLPPATDAVEAQFRDRD 233 + Q KA+Y+G DN ILIWK+ M LP A+ VE F RD Sbjct: 180 --------YDFNPKEKQSKALYWGTYKDN-ILIWKEDMPLPKASQEVEDMFNIRD 225 >B3K8C1.1 B3K8C1_9BACI Putative uncharacterized protein Length = 189 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 111/180 (61%), Gaps = 3/180 (1%) Query: 52 LPFEVIEKNKQESTALANFKGYWHXXXXXXXXXXXXXXTTICGVIGLGYVGLFRWNITQV 111 LP + +E+NK E L W G++ L Y GLF WNIT V Sbjct: 7 LPTQTMEQNKDEGAGLRQVAAQWSRTKWISFTKGLLISCLAVGLLFLAYAGLFEWNITSV 66 Query: 112 PSSVIKISDVSLLKDGKIAYHVKLTDGYRVNQISGKSEGNGNFYITPMRPVFKTKTDAEL 171 P+ V+++SD+S LKDG+IAYHVK+TDGY VNQ S ++ GNFY+TP RP+ K+K A++ Sbjct: 67 PTRVMQVSDISQLKDGRIAYHVKMTDGYNVNQASYDTDEEGNFYVTPKRPIIKSKKFADM 126 Query: 172 GLGNSYELIDLEQLNANHTD--PSTQIKAIYYGPKDDNPILIWKQGMQLPPATDAVEAQF 229 GL N Y D+E+ NA QIKA+Y G DD +LIW+QGM+LPPA+++VE QF Sbjct: 127 GLSNMYYTNDIEERNAYEKSFGDGVQIKALYLGTPDDR-VLIWEQGMELPPASESVEMQF 185 >A6TUR1.1 A6TUR1_ALKMQ Putative uncharacterized protein Length = 130 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 3 KLSCEIVRDLLPLYYDEVCSADTRKSIEAHLATCEHCTADLHKLQQSSRLPFEVIEKNKQ 62 K+SCEI++DLLPLY+D VCS +++ +E HL C++C A+L + + LP E+N + Sbjct: 25 KISCEIIKDLLPLYHDGVCSDESKAMVEEHLTCCDNCKAELQAMD--NELPINYAERNLK 82 Query: 63 ESTALANFKGYW 74 E+ A+ W Sbjct: 83 EAEAVQELSIRW 94 >C1TDP1.1 C1TDP1_9FIRM Putative uncharacterized protein Length = 110 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 3 KLSCEIVRDLLPLYYDEVCSADTRKSIEAHLATCEHCTADLHKLQQSSRLPFEVIEKNKQ 62 K+SCEIV+DLLPLY+D VCS D++ +E HLA C+ C A+L L ++ L E+N Sbjct: 2 KISCEIVKDLLPLYHDGVCSNDSKTMVEEHLAYCDRCKAEL--LVMNNALSINKAEQNLH 59 Query: 63 ESTALANFKGYW 74 E+ A+ W Sbjct: 60 EAEAVKKLSKRW 71 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,332,826,316 Number of extensions: 51052948 Number of successful extensions: 110550 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 110545 Number of HSP's successfully gapped: 20 Length of query: 233 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 102 Effective length of database: 1,826,543,238 Effective search space: 186307410276 Effective search space used: 186307410276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)