BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0038.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3DJW1.1 A3DJW1_CLOTH Putative uncharacterized protein 180 1e-43 B4BG98.1 B4BG98_CLOTM Putative uncharacterized protein 180 1e-43 A8MFR3.1 A8MFR3_ALKOO Putative uncharacterized protein 172 3e-41 B1IL98.1 B1IL98_CLOBK Putative membrane protein 170 8e-41 B1L1S4.1 B1L1S4_CLOBM Putative membrane protein 170 1e-40 >A3DJW1.1 A3DJW1_CLOTH Putative uncharacterized protein Length = 249 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/256 (44%), Positives = 138/256 (53%), Gaps = 30/256 (11%) Query: 1 MWERTEIKRRAKDVLRTSYWKAFVVSLIL---VILGEGSGLPSLNNLRSSTRSELPGSGL 57 MW R +K RAK VL+ SYWKAFVVSLIL + G NNL S E Sbjct: 1 MWTREYLKTRAKKVLKVSYWKAFVVSLILGIAIGDRGGGSGRGFNNLMESLSPEEA---- 56 Query: 58 DFDWGVLWPFLVLVLFIVSIIAI----LGIAFHILIGSPLTVGSMRYFKQSAEGE----V 109 FI+S+I I LGIAF I +G L VG R+F Q+A+ E Sbjct: 57 ---------------FILSLIVIFLVLLGIAFRIFVGYHLEVGGRRFFVQNAQLEGVASE 101 Query: 110 RMGNIGYAFNKDRYWAIVLTMLWRGXXXXXXXXXXIIPGIVKSYAYSQVPYILADNPNIG 169 + +GYAF+K+RY ++ ML+RG IIPGIVK+YAY VPYILADNPNIG Sbjct: 102 ELSVLGYAFDKERYMDVLKAMLYRGVMNFLWYLLFIIPGIVKNYAYMMVPYILADNPNIG 161 Query: 170 YNRAVELSKQMTHGHKFRMFVXXXXXXXXXXXXXXXXXXXXXFVQPYINATKAELYLELR 229 Y RA+ELS++MT+GHKF +FV FV PY +AT AELYL LR Sbjct: 162 YKRALELSEKMTYGHKFNIFVLRLSFIGWYLLGVLACCIGVIFVPPYEHATMAELYLVLR 221 Query: 230 HNALVYNLTTEHELRL 245 A+ NL T EL L Sbjct: 222 QQAIEKNLCTSEELML 237 >B4BG98.1 B4BG98_CLOTM Putative uncharacterized protein Length = 249 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/256 (44%), Positives = 138/256 (53%), Gaps = 30/256 (11%) Query: 1 MWERTEIKRRAKDVLRTSYWKAFVVSLIL---VILGEGSGLPSLNNLRSSTRSELPGSGL 57 MW R +K RAK VL+ SYWKAFVVSLIL + G NNL S E Sbjct: 1 MWTREYLKTRAKKVLKVSYWKAFVVSLILGIAIGDRGGGSGRGFNNLMESLSPEEA---- 56 Query: 58 DFDWGVLWPFLVLVLFIVSIIAI----LGIAFHILIGSPLTVGSMRYFKQSAEGE----V 109 FI+S+I I LGIAF I +G L VG R+F Q+A+ E Sbjct: 57 ---------------FILSLIVIFLVLLGIAFRIFVGYHLEVGGRRFFVQNAQLEGVASE 101 Query: 110 RMGNIGYAFNKDRYWAIVLTMLWRGXXXXXXXXXXIIPGIVKSYAYSQVPYILADNPNIG 169 + +GYAF+K+RY ++ ML+RG IIPGIVK+YAY VPYILADNPNIG Sbjct: 102 ELSVLGYAFDKERYMDVLKAMLYRGVMNFLWYLLFIIPGIVKNYAYMMVPYILADNPNIG 161 Query: 170 YNRAVELSKQMTHGHKFRMFVXXXXXXXXXXXXXXXXXXXXXFVQPYINATKAELYLELR 229 Y RA+ELS++MT+GHKF +FV FV PY +AT AELYL LR Sbjct: 162 YKRALELSEKMTYGHKFNIFVLRLSFIGWYLLGVLACCIGVIFVPPYEHATMAELYLVLR 221 Query: 230 HNALVYNLTTEHELRL 245 A+ NL T EL L Sbjct: 222 QQAIEKNLCTSEELML 237 >A8MFR3.1 A8MFR3_ALKOO Putative uncharacterized protein Length = 259 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 108/260 (41%), Positives = 141/260 (54%), Gaps = 17/260 (6%) Query: 1 MWERTEIKRRAKDVLRTSYWKAFVVSLILVI---------LGEGSGLPSLNNLRSSTRSE 51 MW R E+K RAK+VL+ SYWKAF+VS+I+V + + + N+ +S+ Sbjct: 1 MWIRAELKSRAKEVLKKSYWKAFLVSMIIVAASGDMDSFKIKKQWNITEPRNVLLEQKSD 60 Query: 52 LPGSGLDFDWGVL----WPFLVLVLFIVSIIAILGIAFHILIGSPLTVGSMRYFKQSAEG 107 GS F GV W + +L+ I S + + F I+IG V RYF +SA+ Sbjct: 61 YIGSS--FLEGVTDTAPWVWGLLIGIIASFLMLW--LFKIIIGYAFEVSGKRYFLKSAQD 116 Query: 108 EVRMGNIGYAFNKDRYWAIVLTMLWRGXXXXXXXXXXIIPGIVKSYAYSQVPYILADNPN 167 + N+ YAFN+ R IV TM +RG +IPGIVKSYAY VPYILADNPN Sbjct: 117 HFDLNNLTYAFNRSRIVDIVKTMAYRGLLVFLWSLLFLIPGIVKSYAYQMVPYILADNPN 176 Query: 168 IGYNRAVELSKQMTHGHKFRMFVXXXXXXXXXXXXXXXXXXXXXFVQPYINATKAELYLE 227 IGY RAVELSK MT G K+ +FV FV PY+++T+AELYL Sbjct: 177 IGYQRAVELSKNMTEGEKWNIFVLDLSFIGWNILGSLLFGIGRLFVNPYVDSTQAELYLV 236 Query: 228 LRHNALVYNLTTEHELRLAQ 247 LR NAL L T EL + + Sbjct: 237 LRENALERGLCTREELMMDE 256 >B1IL98.1 B1IL98_CLOBK Putative membrane protein Length = 250 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 139/247 (56%), Gaps = 2/247 (0%) Query: 1 MWERTEIKRRAKDVLRTSYWKAFVVSLILVILGEGSGLPSLNNLRSSTRSELPGSGLDFD 60 MW R +IK RAK +L +YWKAF+VSL++ I+ GS + N+ T F+ Sbjct: 1 MWTREQIKGRAKRILELNYWKAFLVSLVISIVTAGSYGKAEKNINEFTDDYTIFDNTIFE 60 Query: 61 WGVLWPFLVLVLFIVSIIAILGIAFHILIGSPLTVGSMRYFKQSAEGEVRMGNIGYAFNK 120 + W +LV F+ SI AI+ + +++G L VG ++F ++AEGE MG +GY F + Sbjct: 61 GLINWTGKLLV-FLASI-AIILLILRVVVGYMLEVGGRKFFIKAAEGETNMGYLGYCFKE 118 Query: 121 DRYWAIVLTMLWRGXXXXXXXXXXIIPGIVKSYAYSQVPYILADNPNIGYNRAVELSKQM 180 Y+ +++TML R +IPGI+K YAYS VPYILADNP+IG RA++LS +M Sbjct: 119 GSYFGVMVTMLLRSIYTFLWTLLLVIPGIIKGYAYSMVPYILADNPSIGAERAIQLSNRM 178 Query: 181 THGHKFRMFVXXXXXXXXXXXXXXXXXXXXXFVQPYINATKAELYLELRHNALVYNLTTE 240 T G K+ MFV FV PY+++TKAELYL LR A+ T+ Sbjct: 179 TDGEKWDMFVLDLSFLGWYILGMLALGIGVIFVNPYVDSTKAELYLILRKKAIEDGSTSC 238 Query: 241 HELRLAQ 247 EL + Sbjct: 239 EELNVVN 245 >B1L1S4.1 B1L1S4_CLOBM Putative membrane protein Length = 250 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 138/247 (55%), Gaps = 2/247 (0%) Query: 1 MWERTEIKRRAKDVLRTSYWKAFVVSLILVILGEGSGLPSLNNLRSSTRSELPGSGLDFD 60 MW R +IK RAK +L +YWKAF+VSL++ I+ S + N+ T F+ Sbjct: 1 MWTREQIKERAKRILELNYWKAFLVSLVISIVTADSYGKAEKNVNKFTDDYTIFDNTIFE 60 Query: 61 WGVLWPFLVLVLFIVSIIAILGIAFHILIGSPLTVGSMRYFKQSAEGEVRMGNIGYAFNK 120 + W +LV F+ SI AI+ + +++G L VG ++F ++AEGE MG +GY F + Sbjct: 61 GLINWTGKLLV-FLASI-AIILLILRVVVGYMLEVGGRKFFIKAAEGETNMGYLGYCFKE 118 Query: 121 DRYWAIVLTMLWRGXXXXXXXXXXIIPGIVKSYAYSQVPYILADNPNIGYNRAVELSKQM 180 Y+ +++TML R IIPGI+K YAYS VPYILADNP+IG RA++LS +M Sbjct: 119 GSYFGVLVTMLLRSIYTFLWTLLLIIPGIIKGYAYSMVPYILADNPSIGAERAIQLSNRM 178 Query: 181 THGHKFRMFVXXXXXXXXXXXXXXXXXXXXXFVQPYINATKAELYLELRHNALVYNLTTE 240 T G K+ MFV FV PY+++TKAELYL LR A+ T+ Sbjct: 179 TDGQKWDMFVLDLSFLGWYILGMLALGIGVIFVNPYVDSTKAELYLILRKKAIENGSTSC 238 Query: 241 HELRLAQ 247 EL + Sbjct: 239 EELNIVN 245 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.141 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,259,770,261 Number of extensions: 43914070 Number of successful extensions: 146098 Number of sequences better than 1.0e-05: 164 Number of HSP's gapped: 146050 Number of HSP's successfully gapped: 164 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)