BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0034.p
         (85 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7W5.1 B3K7W5_9BACI Major facilitator superfamily MFS_1             109   7e-23
B7DUY1.1 B7DUY1_9BACL Major facilitator superfamily MFS_1              88   3e-16
C1PUZ8.1 C1PUZ8_ALIAC Arabinose efflux permease family protein         86   8e-16
B8I8L6.1 B8I8L6_CLOCE Major facilitator superfamily MFS_1              65   2e-09
B9MN22.1 B9MN22_ANATD Major facilitator superfamily MFS_1              57   4e-07

>B3K7W5.1 B3K7W5_9BACI Major facilitator superfamily MFS_1
          Length = 414

 Score =  109 bits (273), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 60/70 (85%)

Query: 6  FPRLQGNSRGCLAFEPFFLIPFSMFSTYVTLYMYELGMTELNIGWVTTIGLIVQVFSSLF 65
          F +L GN+RGCL +EP FLIP+SMF+TY ++YMY+LG+TE  IGW+T+IGL+VQV SS  
Sbjct: 6  FRQLTGNARGCLVYEPLFLIPYSMFTTYTSIYMYQLGVTETGIGWITSIGLLVQVLSSFL 65

Query: 66 SGYLTDRLGR 75
          SGYLTDRLGR
Sbjct: 66 SGYLTDRLGR 75


>B7DUY1.1 B7DUY1_9BACL Major facilitator superfamily MFS_1
          Length = 415

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 54/64 (84%)

Query: 12 NSRGCLAFEPFFLIPFSMFSTYVTLYMYELGMTELNIGWVTTIGLIVQVFSSLFSGYLTD 71
          N+R C+  EP F+IP++M++TY ++YM ++G+T +N+GW+TT+ L+VQ+ S+L SGY+TD
Sbjct: 8  NARTCVIAEPLFVIPYNMYTTYASVYMLQVGLTSVNLGWLTTMNLVVQMLSALVSGYVTD 67

Query: 72 RLGR 75
          R+GR
Sbjct: 68 RMGR 71


>C1PUZ8.1 C1PUZ8_ALIAC Arabinose efflux permease family protein
          Length = 411

 Score = 86.3 bits (212), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 53/64 (82%)

Query: 12 NSRGCLAFEPFFLIPFSMFSTYVTLYMYELGMTELNIGWVTTIGLIVQVFSSLFSGYLTD 71
          N R C+  EP F+IP++M++TY ++YM +LG+T +++GW+TT+ L+VQ+ S+L SGY+TD
Sbjct: 4  NPRTCVIAEPLFVIPYNMYTTYASVYMLQLGLTSVDLGWLTTMNLVVQMLSALVSGYVTD 63

Query: 72 RLGR 75
          R+GR
Sbjct: 64 RMGR 67


>B8I8L6.1 B8I8L6_CLOCE Major facilitator superfamily MFS_1
          Length = 436

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 45/66 (68%)

Query: 10 QGNSRGCLAFEPFFLIPFSMFSTYVTLYMYELGMTELNIGWVTTIGLIVQVFSSLFSGYL 69
          +GN    +  EP + IP+++ + + TLYMY LG+T++ IG + +I + VQVF S F G +
Sbjct: 23 KGNPTTLILMEPLWGIPYNLIAPFATLYMYTLGITDVQIGLILSIAMFVQVFFSFFGGII 82

Query: 70 TDRLGR 75
          TD+LGR
Sbjct: 83 TDKLGR 88


>B9MN22.1 B9MN22_ANATD Major facilitator superfamily MFS_1
          Length = 421

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%)

Query: 6  FPRLQGNSRGCLAFEPFFLIPFSMFSTYVTLYMYELGMTELNIGWVTTIGLIVQVFSSLF 65
          F  +  N++  L FEP F IP++MF  Y +LYM  +G+ +  IG ++T+  +V + +S F
Sbjct: 15 FKEINPNAKKILFFEPVFTIPYAMFIIYSSLYMTRVGVKDYQIGLLSTVLNLVMLITSPF 74

Query: 66 SGYLTDRLGR 75
          +G L +R GR
Sbjct: 75 AGMLVNRFGR 84


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.333    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 463,870,005
Number of extensions: 15056139
Number of successful extensions: 57979
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 57982
Number of HSP's successfully gapped: 7
Length of query: 85
Length of database: 3,060,696,203
Length adjustment: 55
Effective length of query: 30
Effective length of database: 2,542,540,378
Effective search space: 76276211340
Effective search space used: 76276211340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 126 (53.1 bits)