BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0033.p
         (149 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7W5.1 B3K7W5_9BACI Major facilitator superfamily MFS_1             156   6e-37
C1PUZ8.1 C1PUZ8_ALIAC Arabinose efflux permease family protein         94   4e-18
B7DUY1.1 B7DUY1_9BACL Major facilitator superfamily MFS_1              91   4e-17
B8I8L6.1 B8I8L6_CLOCE Major facilitator superfamily MFS_1              63   7e-09
C1D4A2.1 C1D4A2_DEIDV Putative major facilitator superfamily           59   2e-07

>B3K7W5.1 B3K7W5_9BACI Major facilitator superfamily MFS_1
          Length = 414

 Score =  156 bits (394), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 94/125 (75%)

Query: 16  INSFQRVPHIAFYCLIVEDTRPADRTYVFTLLQIISVIGGLFAPLGGLLVNHYGMVQGMR 75
           IN FQ+VPH AFYCL+VEDT P +RTYVFTLLQ+ISV+GGLFAPLGGLLV H+ +V G+R
Sbjct: 109 INGFQKVPHTAFYCLLVEDTAPKERTYVFTLLQLISVVGGLFAPLGGLLVYHFSLVPGVR 168

Query: 76  IMYVLAFLFMTFQFVGRHLTTRETEAGIKKRLDTREPGPKKSMVEYGGAFRELWADSSLL 135
           IM+VLA + MT QF+GRH  TRETE G +K  +T+  G ++ M +Y    + +  +  LL
Sbjct: 169 IMFVLACILMTIQFIGRHYATRETEIGYRKMKETKAMGLREGMSDYVQVMKSMLGNPLLL 228

Query: 136 LIFGC 140
           +IFG 
Sbjct: 229 MIFGV 233


>C1PUZ8.1 C1PUZ8_ALIAC Arabinose efflux permease family protein
          Length = 411

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 71/124 (57%)

Query: 16  INSFQRVPHIAFYCLIVEDTRPADRTYVFTLLQIISVIGGLFAPLGGLLVNHYGMVQGMR 75
           +N FQR+   A+YCL+ EDT    R+ VFT LQ+++ + G F+P+ G L++  G+V G R
Sbjct: 101 LNGFQRISTTAWYCLLTEDTSANMRSRVFTALQVVATVAGFFSPIAGWLIHRTGVVLGTR 160

Query: 76  IMYVLAFLFMTFQFVGRHLTTRETEAGIKKRLDTREPGPKKSMVEYGGAFRELWADSSLL 135
           ++Y+ AF  MT     RH   RET  G+ +  +TR   P+        A + L  + +L+
Sbjct: 161 LLYLYAFASMTAMIAIRHRGLRETSIGLMRMAETRRLHPRHEWHRIRAAIKALSRNRTLM 220

Query: 136 LIFG 139
            +FG
Sbjct: 221 WLFG 224


>B7DUY1.1 B7DUY1_9BACL Major facilitator superfamily MFS_1
          Length = 415

 Score = 90.5 bits (223), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 70/124 (56%)

Query: 16  INSFQRVPHIAFYCLIVEDTRPADRTYVFTLLQIISVIGGLFAPLGGLLVNHYGMVQGMR 75
           +N FQR+P  A+YCL+ EDT    RT VFT LQ+++ I G  +P+ G LV+  G+V G R
Sbjct: 105 LNGFQRIPTTAWYCLLTEDTPVEARTRVFTALQVVATIAGFVSPVAGWLVHRSGLVAGTR 164

Query: 76  IMYVLAFLFMTFQFVGRHLTTRETEAGIKKRLDTREPGPKKSMVEYGGAFRELWADSSLL 135
           ++Y+ AF  MT     RH   RET  G+ + ++ +    +          + L+ + +L+
Sbjct: 165 VLYLYAFASMTAMIAIRHRGLRETSIGLARMVEAKRLHLRDEWRRIRTVIKTLFRNRTLM 224

Query: 136 LIFG 139
            +FG
Sbjct: 225 WLFG 228


>B8I8L6.1 B8I8L6_CLOCE Major facilitator superfamily MFS_1
          Length = 436

 Score = 63.2 bits (152), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 58/105 (55%)

Query: 17  NSFQRVPHIAFYCLIVEDTRPADRTYVFTLLQIISVIGGLFAPLGGLLVNHYGMVQGMRI 76
           NSF+++   A++CL++ED  P D   V+T + I  ++   FAP+ GLL+N + +V  +R+
Sbjct: 123 NSFEQINQTAWFCLLIEDADPKDLLGVYTWVNIGGLVAIFFAPISGLLINSFTVVPVVRV 182

Query: 77  MYVLAFLFMTFQFVGRHLTTRETEAGIKKRLDTREPGPKKSMVEY 121
           +Y++  L M  + +       ET  G  +  +T+     + + EY
Sbjct: 183 LYLVFALNMLIKVIITFRHCDETRQGKIRMAETKNTSVLQMLYEY 227


>C1D4A2.1 C1D4A2_DEIDV Putative major facilitator superfamily
          Length = 424

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 53/98 (54%)

Query: 21  RVPHIAFYCLIVEDTRPADRTYVFTLLQIISVIGGLFAPLGGLLVNHYGMVQGMRIMYVL 80
           R+  +++  L++ED     R  VF ++ +I  + GL  PL GL++  +G+   MR  Y+ 
Sbjct: 126 RIVALSWSLLLIEDVEERQRARVFGIINLIVTVCGLLTPLVGLIIAQHGVTATMRAYYIA 185

Query: 81  AFLFMTFQFVGRHLTTRETEAGIKKRLDTREPGPKKSM 118
             + MT  F+ R+  T+ET++G+      R  G  +S+
Sbjct: 186 GGVGMTVMFLWRNAITQETQSGVAAMAQHRALGVGQSI 223


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.145    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 882,311,132
Number of extensions: 32535856
Number of successful extensions: 103214
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 103214
Number of HSP's successfully gapped: 8
Length of query: 149
Length of database: 3,060,696,203
Length adjustment: 111
Effective length of query: 38
Effective length of database: 2,014,963,538
Effective search space: 76568614444
Effective search space used: 76568614444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)