BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0032.p
         (144 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7W5.1 B3K7W5_9BACI Major facilitator superfamily MFS_1             136   6e-31
A4XIP0.1 A4XIP0_CALS8 Major facilitator superfamily MFS_1              61   3e-08
B7DUY1.1 B7DUY1_9BACL Major facilitator superfamily MFS_1              61   3e-08
C1PUZ8.1 C1PUZ8_ALIAC Arabinose efflux permease family protein         59   1e-07
B9MN22.1 B9MN22_ANATD Major facilitator superfamily MFS_1              56   1e-06

>B3K7W5.1 B3K7W5_9BACI Major facilitator superfamily MFS_1
          Length = 414

 Score =  136 bits (343), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 94/133 (70%)

Query: 1   MLLTLWLLMPKIPDQSANRSMLAGFGLSSLSDVMLVLYPSSSLLWIGLSTILAAVGLMIS 60
           ML+ +  +MP+I ++  +R+M+ GF +S LS+VMLV  P   LL + LST++AA G M++
Sbjct: 274 MLIFMRWIMPRIGERHVHRTMVWGFVISVLSNVMLVFAPQGDLLVLSLSTVIAAFGTMMT 333

Query: 61  SPYLEAAVQNAIDDDNWAKIFSMLSVLILLFTAPAGIIGGWAYKLDPSIPLWLVTAAFAI 120
            PYLE AV NAIDD+N AKIF++L VLIL+  +P+GIIGGWAY +DP IP  LV  AF I
Sbjct: 334 YPYLETAVANAIDDENRAKIFALLQVLILIVISPSGIIGGWAYGIDPRIPFLLVAGAFVI 393

Query: 121 SYMLLHLYRRRTD 133
           S  L+ LY  +  
Sbjct: 394 SIPLMLLYSNKVK 406


>A4XIP0.1 A4XIP0_CALS8 Major facilitator superfamily MFS_1
          Length = 420

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 7   LLMPKIPDQSANRSMLAGFGLSSLSDVMLVLYPSSSLLWI--GLSTILAAVGLMISSPYL 64
            L+P + DQ  +  +  G  L ++S+ ++++ P  +  +I   + T+L ++G  +   ++
Sbjct: 287 FLIPNLKDQKHDIVLFWGMLLITVSNALILVAPPGTFGFILMIIVTVLGSIGAAVYYSFV 346

Query: 65  EAAVQNAIDDDNWAKIFSMLSVLILLFTAPAGIIGGWAYKLDPSIPLWLVTAAFAISYML 124
           +A + N++DDD  A + S+   LI LF+ P G I G  Y    S+P  L T  F     +
Sbjct: 347 DAILANSVDDDRRAHVLSITMFLISLFSMPVGAIAGQCYTFSKSLPFVLAT-IFTFLCTV 405

Query: 125 LHLYRRRTDR 134
           L  +R R  R
Sbjct: 406 LIFFRVRIGR 415


>B7DUY1.1 B7DUY1_9BACL Major facilitator superfamily MFS_1
          Length = 415

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 62/107 (57%)

Query: 1   MLLTLWLLMPKIPDQSANRSMLAGFGLSSLSDVMLVLYPSSSLLWIGLSTILAAVGLMIS 60
           M + L  L  +  D      M AG  L + + V+L + P  +     ++T L++VG + +
Sbjct: 270 MAVCLATLARRFRDDRGYHWMQAGIALLTAATVLLAISPPRTFAPTIIATALSSVGTVFA 329

Query: 61  SPYLEAAVQNAIDDDNWAKIFSMLSVLILLFTAPAGIIGGWAYKLDP 107
           +P++E+ V NAIDD   + + ++L+VLILL ++P+G + G+ Y  +P
Sbjct: 330 NPFVESIVANAIDDTERSTMLAVLNVLILLSSSPSGAMTGYLYAWNP 376


>C1PUZ8.1 C1PUZ8_ALIAC Arabinose efflux permease family protein
          Length = 411

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 61/109 (55%)

Query: 1   MLLTLWLLMPKIPDQSANRSMLAGFGLSSLSDVMLVLYPSSSLLWIGLSTILAAVGLMIS 60
           M + L     +  D      M AG GL + + ++L +    +     ++T+L+A G + +
Sbjct: 266 MAVCLATFARRFQDDHGYHWMQAGIGLLTAATILLAISAPRTFAPTIIATVLSAAGTVFA 325

Query: 61  SPYLEAAVQNAIDDDNWAKIFSMLSVLILLFTAPAGIIGGWAYKLDPSI 109
           +P++E+ V NA+DD   + + ++L+VLILL ++P+G I G+ Y   P +
Sbjct: 326 NPFVESLVANAMDDAERSTMLAVLNVLILLSSSPSGAIAGYLYAWHPRL 374


>B9MN22.1 B9MN22_ANATD Major facilitator superfamily MFS_1
          Length = 421

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 70/135 (51%), Gaps = 3/135 (2%)

Query: 2   LLTLWLLMPKIPDQSANRSMLAGFGLSSLSDVMLVLYPSSSLLWI--GLSTILAAVGLMI 59
           L+ +  L+P + +Q  +  +  G    ++S+ ++++ P  +  +I   + T+L ++G  +
Sbjct: 283 LIFVIFLIPNLKEQKHDTVLFWGMFSITVSNALILVAPPGTFGFILMIIVTVLGSIGAAV 342

Query: 60  SSPYLEAAVQNAIDDDNWAKIFSMLSVLILLFTAPAGIIGGWAYKLDPSIPLWLVTAAFA 119
              +++A + N++DD+  A + S+   LI LF+ P G I G  Y    S+P  L T  F 
Sbjct: 343 YYSFVDAILANSVDDERRAHVLSITMFLISLFSMPVGAIAGQCYTFSKSLPFVLAT-IFT 401

Query: 120 ISYMLLHLYRRRTDR 134
           +   +L  ++ R  R
Sbjct: 402 LLCTILIFFKIRIRR 416


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 825,967,744
Number of extensions: 29892037
Number of successful extensions: 120878
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 120880
Number of HSP's successfully gapped: 5
Length of query: 144
Length of database: 3,060,696,203
Length adjustment: 107
Effective length of query: 37
Effective length of database: 2,052,647,598
Effective search space: 75947961126
Effective search space used: 75947961126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)