BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0026.p (187 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBE8.1 B3KBE8_9BACI DinB family protein 261 3e-68 A7ZAR7.1 A7ZAR7_BACA2 DinB 141 3e-32 C3ALJ9.1 C3ALJ9_BACMY DinB 139 2e-31 C3BTL3.1 C3BTL3_9BACI DinB 139 2e-31 C3B3I4.1 C3B3I4_BACMY DinB 138 2e-31 >B3KBE8.1 B3KBE8_9BACI DinB family protein Length = 172 Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 116/172 (67%), Positives = 145/172 (84%) Query: 16 VKQYIRQQFEYHVWANRKVCRYLQELTEEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFF 75 +K +I QQ++YHVWANRKVC YLQ L+EE Y+K I SVFP+IYD MVHIYVID GWLSFF Sbjct: 1 MKTWILQQYDYHVWANRKVCEYLQGLSEEAYRKEIVSVFPSIYDTMVHIYVIDSGWLSFF 60 Query: 76 RAGGVTDMSAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDIEVVY 135 AGGVT+MS YL LK++I LVA T+GKRIEEL Q++D+LA +FR+F + ++++ +Y Sbjct: 61 NAGGVTEMSPAYLESLKDSIARLVAETEGKRIEELGQLMDDLAARFRLFIEQHENLDAIY 120 Query: 136 PSGAFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLYTLSQ 187 PSG F+ CLDY+QH++NHGTYHRGN+TAMLRQ+GHPGTPTDYG+YLYTLS Sbjct: 121 PSGDFRASCLDYIQHIINHGTYHRGNVTAMLRQIGHPGTPTDYGYYLYTLSH 172 >A7ZAR7.1 A7ZAR7_BACA2 DinB Length = 169 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/169 (45%), Positives = 107/169 (63%), Gaps = 17/169 (10%) Query: 22 QQFEYHVWANRKVCRYLQELTEEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFFRAGGVT 81 Q ++YH+WAN+++ L+EL E+VY+K I SVFP+I + H+Y+ D GW F + Sbjct: 7 QLYDYHLWANQQIFTRLKELPEDVYRKEIQSVFPSIAGVLTHVYLSDKGWFDVFSGERLE 66 Query: 82 DM--SAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDI----EVVY 135 D SAE Q KE+I S K IEELE M L++++++F + ++I E+ + Sbjct: 67 DTLKSAE---QQKEDILS-------KEIEELEDMFLELSDRYQLFLQKEENISLPLEIEH 116 Query: 136 PSG-AFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLY 183 PSG + D + H+VNHGTYHRGNITAMLRQMG+ PTDYG YLY Sbjct: 117 PSGDIMKTAAADMILHVVNHGTYHRGNITAMLRQMGYASVPTDYGMYLY 165 >C3ALJ9.1 C3ALJ9_BACMY DinB Length = 170 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 109/174 (62%), Gaps = 13/174 (7%) Query: 16 VKQYIRQQFEYHVWANRKVCRYLQELTEEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFF 75 +KQY+ +QF+YH WAN+++ +L+EL +EVY + + SVFP+I ++HIYV+D WL Sbjct: 1 MKQYMIKQFDYHTWANKRILEHLRELPKEVYYQKVQSVFPSIEKVLIHIYVVDCVWLHVL 60 Query: 76 RAGGVTDMSAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDI-EVV 134 + AE L KE L + K ++EL+ + + +Q+++F + D+ +V+ Sbjct: 61 NGKSM----AEALQVGKE----LQEQVENKTMDELKNLFHKVTQQYKVFLDKQKDMNQVI 112 Query: 135 YPSGAFQGR----CLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLYT 184 + GR + +QH+VNHGTYHRGNITAMLRQ+G+P T TD+ FYL+ Sbjct: 113 LLDNPYAGRLKTSVSELVQHVVNHGTYHRGNITAMLRQLGYPSTMTDFVFYLHA 166 >C3BTL3.1 C3BTL3_9BACI DinB Length = 170 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 109/174 (62%), Gaps = 13/174 (7%) Query: 16 VKQYIRQQFEYHVWANRKVCRYLQELTEEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFF 75 +KQY+ +QF+YH WAN+++ +L+EL +EVY + + SVFP+I ++HIYV+D WL Sbjct: 1 MKQYMIKQFDYHTWANKRILEHLRELPKEVYYQEVQSVFPSIEKVLIHIYVVDCVWLHIL 60 Query: 76 RAGGVTDMSAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDI-EVV 134 + AE L KE L + K ++EL+ + + +Q+++F + D+ +V+ Sbjct: 61 NGKSM----AEALQVGKE----LQEQAENKTMDELKSLFHKVTQQYKVFLDKQKDMNQVI 112 Query: 135 YPSGAFQGR----CLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLYT 184 + GR + +QH+VNHGTYHRGNITAMLRQ+G+P T TD+ FYL+ Sbjct: 113 LLDNPYAGRLKTSVSELVQHVVNHGTYHRGNITAMLRQLGYPSTMTDFVFYLHA 166 >C3B3I4.1 C3B3I4_BACMY DinB Length = 170 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 109/174 (62%), Gaps = 13/174 (7%) Query: 16 VKQYIRQQFEYHVWANRKVCRYLQELTEEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFF 75 +KQY+ +QF+YH WAN+++ +L+EL +EVY + + SVFP+I ++HIYV+D WL Sbjct: 1 MKQYMIKQFDYHTWANKRILEHLRELPKEVYYQEVQSVFPSIEKVLIHIYVVDCVWLHVL 60 Query: 76 RAGGVTDMSAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDI-EVV 134 + AE L KE L + K ++EL+ + + +Q+++F + D+ +V+ Sbjct: 61 NGKSM----AEALQVGKE----LQEQVENKTMDELKNLFHKVTQQYKVFLDKQKDMNQVI 112 Query: 135 YPSGAFQGR----CLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLYT 184 + GR + +QH+VNHGTYHRGNITAMLRQ+G+P T TD+ FYL+ Sbjct: 113 LLDNPYAGRLKTSVSELVQHVVNHGTYHRGNITAMLRQLGYPSTMTDFVFYLHA 166 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,172,030,491 Number of extensions: 45944782 Number of successful extensions: 136785 Number of sequences better than 1.0e-05: 138 Number of HSP's gapped: 136535 Number of HSP's successfully gapped: 138 Length of query: 187 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 59 Effective length of database: 1,854,806,283 Effective search space: 109433570697 Effective search space used: 109433570697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)