BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0022.p (186 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6TM54.1 A6TM54_ALKMQ Regulatory protein, LuxR 109 1e-22 B0K2P4.1 B0K2P4_THEPX Regulatory protein, LuxR 105 1e-21 B0KCY8.1 B0KCY8_THEP3 Transcriptional activator of acetoin/glyce... 88 4e-16 Q8R6H8.1 Q8R6H8_THETN Putative uncharacterized protein 73 1e-11 B8I686.1 B8I686_CLOCE Transcriptional regulator, LuxR family 68 3e-10 >A6TM54.1 A6TM54_ALKMQ Regulatory protein, LuxR Length = 258 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 91/160 (56%), Gaps = 1/160 (0%) Query: 20 FLFLLTDEEGVLLAMDYSRNLEAIVSQSPIRLGMYFSENSCGVNAISEAIAKGCPVYLPP 79 + F L D++G+LLA + S + I+ G+ F E S G NAIS AI PV++ P Sbjct: 62 YAFFLVDQQGILLATERSGQIGREKEMLQIKPGISFVEESYGTNAISMAIQLEKPVHMRP 121 Query: 80 EDHESPLFQNWHCFSVPLNVGNETLGYLDVSTINADMKSELIAIAKLIPADMMISYQGQL 139 E+H S + +CF++PLNV +E +GYLDVSTIN + E+I I +L+P ++ Y+ Q+ Sbjct: 122 EEHYSEHLKGLYCFAIPLNVDDEIIGYLDVSTINQKITEEMITITELLPYKIIEEYKKQI 181 Query: 140 AN-QAAEXXXXXXXXXRQLLVLELISQGLTGKAIASKLKI 178 N + A +QL +L+L+ + T I +L + Sbjct: 182 KNIEKAFKRESSKLTTKQLQILQLMIKSYTEDEIGKELHV 221 >B0K2P4.1 B0K2P4_THEPX Regulatory protein, LuxR Length = 257 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 2/165 (1%) Query: 15 HLSGTFLFLLTDEEGVLLAMDYSRNLEAIVSQSPIRLGMYFSENSCGVNAISEAIAKGCP 74 L ++FLL D EG LL + Y++ + ++ IR G F E SCG NAIS A+ P Sbjct: 61 QLKKRYIFLLVDSEGYLLDVLYNKKIYKDITDLGIRRGTSFKEESCGTNAISLAMKLKQP 120 Query: 75 VYLPPEDHESPLFQNWHCFSVPLNVGNETLGYLDVSTINADMKSELIAIAKLIPADMMIS 134 +YL PE+H +F+ W+C + P ++ N+ +GYLD+S I +M E++ L+ + Sbjct: 121 IYLKPEEHYCDIFKQWYCIATPFHIDNQIVGYLDISIIEHNMADEMMGFIDLLVYKIANE 180 Query: 135 YQGQLANQAAEXXXXXXXXXRQLLVLELISQGLTGKAIASKLKIK 179 Y+ ++ ++ E +Q+ +++ ++G T AI+ +L +K Sbjct: 181 YKREMDLESQE--DLEKLTDKQIEIIKKCAKGYTELAISMELGLK 223 >B0KCY8.1 B0KCY8_THEP3 Transcriptional activator of acetoin/glycerol metabolism-like protein Length = 259 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 16 LSGTFLFLLTDEEGVLLAMDYSRNLEAIVSQSPIRLGMYFSENSCGVNAISEAIAKGCPV 75 + G +LFLL D EG LL + S E V S R G+ F E SCG NAIS A+ V Sbjct: 61 VRGKYLFLLADVEGYLLEVKCSIEEEKYVKDSGFRPGVSFKEESCGTNAISMAMRLKRVV 120 Query: 76 YLPPEDHESPLFQNWHCFSVPLNVGN-ETLGYLDVSTINADMKSELIAIAKLIPADMMIS 134 Y+ +H +F+ W+C + + N E +GY+D+S IN + E+ + KL+ + Sbjct: 121 YIRAYEHYCDIFKKWYCIASHITTKNGEIVGYVDISIINEKIADEITIVIKLLAEKIANK 180 Query: 135 YQGQLANQAAEXXXXXXXXXRQLLVLELISQGLTGKAIA 173 Y+ ++ + + +Q+ +L L ++G AIA Sbjct: 181 YENRVKEEELK-DFKIKLNDKQIKILTLEAKGYKELAIA 218 >Q8R6H8.1 Q8R6H8_THETN Putative uncharacterized protein Length = 148 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%) Query: 14 DHLSGTFLFLLTDEEGVLLAMDYSRNLEAIVSQSPIRLGMYFSENSCGVNAISEAIAKGC 73 D + G +LFLL+D EG LL + S + + S G+ F E SCG NAIS A+ Sbjct: 59 DWVKGEYLFLLSDFEGYLLDVKCSTKEKKCIKDSGFEQGVSFREESCGTNAISMAMRLKR 118 Query: 74 PVYLPPEDHESPLFQNWHCFSVPLNVGN 101 VY+ P++H +F+ WHC + P+ V N Sbjct: 119 VVYVRPKEHYCDIFKKWHCIASPIMVEN 146 >B8I686.1 B8I686_CLOCE Transcriptional regulator, LuxR family Length = 180 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%) Query: 49 IRLGMYFSENSCGVNAISEAIAKGCPVYLPPEDHESPLFQNWHCFSVPLNVGNETLGYLD 108 IR+GM F+E + G NAI+ ++ PVY P H L + ++ +SVPL +GYL Sbjct: 10 IRVGMSFAERAIGTNAIALSMKTKEPVYTTPPHHYCDLLREFYFYSVPLETKKREIGYLA 69 Query: 109 VSTINADMKSELIAIAKLIPADMMISYQGQLANQAAEXXXXXXXXXRQLLVLELISQGLT 168 + ++N + EL IA L ++ + N +QL +L+L+++G+ Sbjct: 70 ICSLNEPVGFELEIIADLTAYKILNELKSNEINSVLPNKKECILNKKQLEILKLVAKGVP 129 Query: 169 GKAIA 173 K IA Sbjct: 130 DKTIA 134 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 870,212,976 Number of extensions: 33060888 Number of successful extensions: 59760 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 59819 Number of HSP's successfully gapped: 17 Length of query: 186 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 58 Effective length of database: 1,854,806,283 Effective search space: 107578764414 Effective search space used: 107578764414 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)