BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0016.p (201 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3Q5.1 B3K3Q5_9BACI Putative uncharacterized protein 206 1e-51 B1D4K0.1 B1D4K0_9BACL Putative uncharacterized protein 156 1e-36 Q8TN40.1 Q8TN40_METAC Predicted protein 100 5e-20 B4BD56.1 B4BD56_CLOTM Putative uncharacterized protein 83 2e-14 A3DK46.1 A3DK46_CLOTH Putative uncharacterized protein 82 3e-14 >B3K3Q5.1 B3K3Q5_9BACI Putative uncharacterized protein Length = 247 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/199 (50%), Positives = 129/199 (64%) Query: 3 IVSLLVVLYGSYTLLFKTPAAPSVRHLENQEDYIASLSKYRNXXXXXXXXXXXXXQLERI 62 +VS+L + YGSY LLFK+PAA ++ ++ +EDYI +L YRN QLERI Sbjct: 49 VVSMLALFYGSYVLLFKSPAAKPIQTIQTREDYIEALHHYRNVKVLKNDIALALDQLERI 108 Query: 63 EKKKSTLLQVLGERFEPAELSYRKFLSVITEVEKLFYLNLRGILSKLSIFDASEFTLFTN 122 EKK++ LL VLG+RF+P ELSY+KF+ VI EVEKLFYLN+RGIL+KL +F AS+F + Sbjct: 109 EKKRNALLGVLGQRFQPTELSYKKFMGVIDEVEKLFYLNIRGILNKLGVFAASDFARMAD 168 Query: 123 RQKPKSFSDALVHRKTGLYNEYFAHVTGYLGANEXXXXXXXXXXXXXXXXXXTDYTAIEE 182 + K S + +KT LY EY A+VTGYL ANE TDY +E+ Sbjct: 169 QPKASQLSSKVAQKKTALYQEYLAYVTGYLEANEEIMLKLDKLLLEISLLGSTDYRDVED 228 Query: 183 MPCMKELSALIGQTKLYQN 201 MPCMKE+ ALI QTKLY+ Sbjct: 229 MPCMKEIDALIKQTKLYKQ 247 >B1D4K0.1 B1D4K0_9BACL Putative uncharacterized protein Length = 262 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 115/200 (57%), Gaps = 1/200 (0%) Query: 2 LIVSLLVVLYGSYTLLFKTPAAPSVRHLENQEDYIASLSKYRNXXXXXXXXXXXXXQLER 61 L+ S + + YG Y LFK PAA V+ ++ +DY+ +LS++R QLER Sbjct: 64 LVASAITLTYGCYFFLFKAPAALPVKDIKTHDDYVEALSRFRRIKVLEEDIGLALRQLER 123 Query: 62 IEKKKSTLLQVLGERFEPAELSYRKFLSVITEVEKLFYLNLRGILSKLSIFDASEFTLFT 121 + KKK+ LL+VL +RF+PAELSY+KF SVI EVEKLFYLN+R IL++L+ FDASEF + Sbjct: 124 MRKKKNMLLEVLKQRFDPAELSYKKFSSVIYEVEKLFYLNVRSILNRLNTFDASEFESVS 183 Query: 122 NRQKPKSFSDALVHRKTGLYNEYFAHVTGYLGANEXXXXXXXXXXXXXXXXXXTDYTAIE 181 R KP L+ + +Y EY + LG NE + I+ Sbjct: 184 GR-KPSPLPPELLQARKNVYGEYLSFTKQSLGTNEEILLKLDQLMLEISRLDSLEPGDID 242 Query: 182 EMPCMKELSALIGQTKLYQN 201 MPCM+E+ LI QT+ Y+N Sbjct: 243 SMPCMQEIDTLIKQTQYYKN 262 >Q8TN40.1 Q8TN40_METAC Predicted protein Length = 247 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 92/193 (47%) Query: 9 VLYGSYTLLFKTPAAPSVRHLENQEDYIASLSKYRNXXXXXXXXXXXXXQLERIEKKKST 68 ++YG+Y LL + + EDYI +L+ +R Q+ER++KK T Sbjct: 55 LIYGNYELLTRPEKETQTNKIRTVEDYIEALNIHRGLKTFEKTVDLLLDQIERLQKKNKT 114 Query: 69 LLQVLGERFEPAELSYRKFLSVITEVEKLFYLNLRGILSKLSIFDASEFTLFTNRQKPKS 128 + +L + F +E+SY+KF +VI EVEK+F +N+ IL+KL FD ++ K + Sbjct: 115 IRDILLKIFSASEMSYKKFDAVIAEVEKIFLMNIGSILNKLDAFDEKDYNFVRKEYKEGA 174 Query: 129 FSDALVHRKTGLYNEYFAHVTGYLGANEXXXXXXXXXXXXXXXXXXTDYTAIEEMPCMKE 188 F + LV K +YNEY V NE + +E+M M E Sbjct: 175 FPEELVKEKFKVYNEYIKFVKAATEDNEQILLKLDKLLLEISGLNSIESGQLEQMAGMIE 234 Query: 189 LSALIGQTKLYQN 201 + LI Q K Y+N Sbjct: 235 IDNLIKQAKYYKN 247 >B4BD56.1 B4BD56_CLOTM Putative uncharacterized protein Length = 244 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 96/198 (48%) Query: 2 LIVSLLVVLYGSYTLLFKTPAAPSVRHLENQEDYIASLSKYRNXXXXXXXXXXXXXQLER 61 + +S+ LYG+YTLL + ++ +++ D I +L++ Q+ER Sbjct: 46 IFLSISFFLYGNYTLLSQNDTQININEIDDYRDCIIALNQSYGKKAFDESITTIKEQVER 105 Query: 62 IEKKKSTLLQVLGERFEPAELSYRKFLSVITEVEKLFYLNLRGILSKLSIFDASEFTLFT 121 +KKK + ++LG++F+ + Y KF + I +VE +F N++ ILSK++ FD ++ Sbjct: 106 FKKKKEKIFEILGQKFDVIDKVYEKFKTTIFDVEYVFLSNIKAILSKINAFDEEDYERLC 165 Query: 122 NRQKPKSFSDALVHRKTGLYNEYFAHVTGYLGANEXXXXXXXXXXXXXXXXXXTDYTAIE 181 + K FSD ++ K +Y EYF V + NE + IE Sbjct: 166 HDISQKKFSDEVIASKKNIYKEYFIFVKNAIEDNEEIIIKLDALLLEISKHSTIEAGEIE 225 Query: 182 EMPCMKELSALIGQTKLY 199 M +KE+ LI +++ Y Sbjct: 226 NMKEIKEMDELIKKSRYY 243 >A3DK46.1 A3DK46_CLOTH Putative uncharacterized protein Length = 244 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 95/198 (47%) Query: 2 LIVSLLVVLYGSYTLLFKTPAAPSVRHLENQEDYIASLSKYRNXXXXXXXXXXXXXQLER 61 + +S+ LYG+YTLL + ++ +++ D I +L++ Q+ER Sbjct: 46 IFLSISFFLYGNYTLLSQNDTQININEIDDYRDCIIALNQSYGKKAFDESITTIKEQVER 105 Query: 62 IEKKKSTLLQVLGERFEPAELSYRKFLSVITEVEKLFYLNLRGILSKLSIFDASEFTLFT 121 +KKK + ++LG++F+ + Y KF + I +VE +F N++ ILSK++ FD ++ Sbjct: 106 FKKKKEKIFEILGQKFDVIDKVYEKFKTTIFDVEYVFLSNIKAILSKINAFDEEDYERLC 165 Query: 122 NRQKPKSFSDALVHRKTGLYNEYFAHVTGYLGANEXXXXXXXXXXXXXXXXXXTDYTAIE 181 K FSD ++ K +Y EYF V + NE + IE Sbjct: 166 RDISQKKFSDEVIASKKNIYKEYFIFVKNAIEDNEEIIIKLDALLLEISKHSTIEAGEIE 225 Query: 182 EMPCMKELSALIGQTKLY 199 M +KE+ LI +++ Y Sbjct: 226 NMKEIKEMDELIKKSRYY 243 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 892,315,005 Number of extensions: 26067962 Number of successful extensions: 51040 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 51034 Number of HSP's successfully gapped: 5 Length of query: 201 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 72 Effective length of database: 1,845,385,268 Effective search space: 132867739296 Effective search space used: 132867739296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)