BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0013.p (350 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBH2.1 B3KBH2_9BACI Putative uncharacterized protein 387 e-105 Q8GCB3.1 Q8GCB3_BACCI BtrU protein 379 e-103 Q4H4G2.1 Q4H4G2_BACCI Possible transcriptional regulator 379 e-103 A3IFX0.1 A3IFX0_9BACI Putative uncharacterized protein 367 e-100 C0ZD96.1 C0ZD96_BREBN Putative aminotransferase 347 7e-94 >B3KBH2.1 B3KBH2_9BACI Putative uncharacterized protein Length = 353 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/350 (56%), Positives = 233/350 (66%), Gaps = 4/350 (1%) Query: 5 ELNADGWAAIDEALEQLYGEQEQKHYGTVIPYMLGGPDPLNGISVYEVREPLPHWHFVTY 64 E NA GW AID+AL +LYGEQE KHYG +IPY LGGPDPLNGIS Y P+PHWH VTY Sbjct: 4 EDNAPGWDAIDDALLKLYGEQEPKHYGALIPYALGGPDPLNGISAYVSNTPMPHWHMVTY 63 Query: 65 GFSELYEKESDDPEHSGYGFELTFRLFKPATEDEPPAWALNLLQNLGRYVFNSGNVFRSG 124 GFSELY+KESD E SGYGFELTFRL KP E+EPPAWALNLLQN+GRYVFNSGN+FRSG Sbjct: 64 GFSELYDKESDHLEESGYGFELTFRLAKPKDEEEPPAWALNLLQNMGRYVFNSGNIFRSG 123 Query: 125 DYMDANGPIXXXXXXXXXXXXFIADPLLRAIDTPNGRLEFIQLVGITNDELLAMQVWNTL 184 DY+DANGPI FI DP L A+DTPNGR+EF+Q++GIT +EL AMQ WNTL Sbjct: 124 DYLDANGPICLGADTQLTALAFIEDPELPAMDTPNGRVEFLQMIGITREELEAMQTWNTL 183 Query: 185 GVLAEMTEHLPLYMTDLQRDSLLKLPAIAEAVRLGSENEGSNTGALYVDQLAWENPAEG- 243 GVL EH+PLY+TDL RDS LK+P+I+E V G + EGSNTG LYV QLA+E +G Sbjct: 184 GVLQACVEHMPLYITDLNRDSFLKIPSISETVDRGMKEEGSNTGFLYVSQLAFEPGKKGW 243 Query: 244 ---SVHTLQLGAKQAEIVXXXXXXXXXXXXXXXXAGPEISVSFETGDTPGFEIREELVIL 300 + LQ+GAKQA I+ GPE+ V FE G+ + + V L Sbjct: 244 LSKTPAALQIGAKQAGIIGKLLQGRILKEKSLSLVGPEVRVVFEPGNESRWTAEDGDVTL 303 Query: 301 KLDEAAGAALSEIFRPSAGLYPLPGWPELAIRIVPTHITDSEGTIVKTIG 350 +D+ S P + L G P + I IV T I D EG +V+ IG Sbjct: 304 IMDDRTAGEFSSRLVPQVSTFELSGLPGIRIEIVKTEIKDQEGNVVQVIG 353 >Q8GCB3.1 Q8GCB3_BACCI BtrU protein Length = 390 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/350 (55%), Positives = 233/350 (66%), Gaps = 4/350 (1%) Query: 5 ELNADGWAAIDEALEQLYGEQEQKHYGTVIPYMLGGPDPLNGISVYEVREPLPHWHFVTY 64 E N GW AID+ +LYG+QE KHYGT+I Y LGGPDPL+GIS Y+ EP PHWHFVT+ Sbjct: 41 EPNTAGWDAIDKEFVKLYGDQEPKHYGTLISYALGGPDPLDGISAYKTDEPAPHWHFVTF 100 Query: 65 GFSELYEKESDDPEHSGYGFELTFRLFKPATEDEPPAWALNLLQNLGRYVFNSGNVFRSG 124 GFSELY+KESD PE SGYGFELTFRL + A E+EPPAWA+NLLQN+GRYVFNSGN+FRSG Sbjct: 101 GFSELYDKESDHPEESGYGFELTFRLDRGAEEEEPPAWAINLLQNMGRYVFNSGNIFRSG 160 Query: 125 DYMDANGPIXXXXXXXXXXXXFIADPLLRAIDTPNGRLEFIQLVGITNDELLAMQVWNTL 184 DYMDANGPI FI DP L AIDTPNGR+EFIQ+VGIT DEL AMQ WNTL Sbjct: 161 DYMDANGPICLGSDTRLTALAFIRDPELPAIDTPNGRVEFIQMVGITRDELEAMQTWNTL 220 Query: 185 GVLAEMTEHLPLYMTDLQRDSLLKLPAIAEAVRLGSENEGSNTGALYVDQLAWENPAEGS 244 G+L+ ++P Y+T+L RDSLLK+ A++EA G +GSNTG L+VDQLAWE +G Sbjct: 221 GMLSACLPYMPHYITNLSRDSLLKVEAVSEAAEKGMREDGSNTGFLFVDQLAWEPGKKGW 280 Query: 245 VH----TLQLGAKQAEIVXXXXXXXXXXXXXXXXAGPEISVSFETGDTPGFEIREELVIL 300 + L LGAKQA I+ GPE+ F+ G+ P + V + Sbjct: 281 LSKAPAALTLGAKQAGIIGKLLQGRILKGKDFTLVGPEVRAIFKAGEKPECAAGDGEVRI 340 Query: 301 KLDEAAGAALSEIFRPSAGLYPLPGWPELAIRIVPTHITDSEGTIVKTIG 350 LDE A LS P + +P IRIV T+I DSEG +V+ IG Sbjct: 341 MLDEQAAGELSRGLIPKESVLEIPSLQGTVIRIVKTNIKDSEGNVVEVIG 390 >Q4H4G2.1 Q4H4G2_BACCI Possible transcriptional regulator Length = 380 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/350 (55%), Positives = 233/350 (66%), Gaps = 4/350 (1%) Query: 5 ELNADGWAAIDEALEQLYGEQEQKHYGTVIPYMLGGPDPLNGISVYEVREPLPHWHFVTY 64 E N GW AID+ +LYG+QE KHYGT+I Y LGGPDPL+GIS Y+ EP PHWHFVT+ Sbjct: 31 EPNTAGWDAIDKEFVKLYGDQEPKHYGTLISYALGGPDPLDGISAYKTDEPAPHWHFVTF 90 Query: 65 GFSELYEKESDDPEHSGYGFELTFRLFKPATEDEPPAWALNLLQNLGRYVFNSGNVFRSG 124 GFSELY+KESD PE SGYGFELTFRL + A E+EPPAWA+NLLQN+GRYVFNSGN+FRSG Sbjct: 91 GFSELYDKESDHPEESGYGFELTFRLDRGAEEEEPPAWAINLLQNMGRYVFNSGNIFRSG 150 Query: 125 DYMDANGPIXXXXXXXXXXXXFIADPLLRAIDTPNGRLEFIQLVGITNDELLAMQVWNTL 184 DYMDANGPI FI DP L AIDTPNGR+EFIQ+VGIT DEL AMQ WNTL Sbjct: 151 DYMDANGPICLGSDTRLTALAFIRDPELPAIDTPNGRVEFIQMVGITRDELEAMQTWNTL 210 Query: 185 GVLAEMTEHLPLYMTDLQRDSLLKLPAIAEAVRLGSENEGSNTGALYVDQLAWENPAEGS 244 G+L+ ++P Y+T+L RDSLLK+ A++EA G +GSNTG L+VDQLAWE +G Sbjct: 211 GMLSACLPYMPHYITNLSRDSLLKVEAVSEAAEKGMREDGSNTGFLFVDQLAWEPGKKGW 270 Query: 245 VH----TLQLGAKQAEIVXXXXXXXXXXXXXXXXAGPEISVSFETGDTPGFEIREELVIL 300 + L LGAKQA I+ GPE+ F+ G+ P + V + Sbjct: 271 LSKAPAALTLGAKQAGIIGKLLQGRILKGKDFTLVGPEVRAIFKAGEKPECAAGDGEVRI 330 Query: 301 KLDEAAGAALSEIFRPSAGLYPLPGWPELAIRIVPTHITDSEGTIVKTIG 350 LDE A LS P + +P IRIV T+I DSEG +V+ IG Sbjct: 331 MLDEQAAGELSRGLIPKESVLEIPSLQGTVIRIVKTNIKDSEGNVVEVIG 380 >A3IFX0.1 A3IFX0_9BACI Putative uncharacterized protein Length = 353 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/351 (51%), Positives = 234/351 (66%), Gaps = 4/351 (1%) Query: 4 EELNADGWAAIDEALEQLYGEQEQKHYGTVIPYMLGGPDPLNGISVYEVREPLPHWHFVT 63 EE+ A GW AIDEA+ Q++GEQE KHYGT+IPY LGG DPL+GIS Y+ P+PHWHFVT Sbjct: 3 EEVMAVGWDAIDEAVSQVHGEQEPKHYGTMIPYSLGGQDPLDGISAYKSETPVPHWHFVT 62 Query: 64 YGFSELYEKESDDPEHSGYGFELTFRLFKPATEDEPPAWALNLLQNLGRYVFNSGNVFRS 123 YGFSELYEKE ++ ++SGYGFELTFRL + EDEPPAWALNLLQN+GRYVFNSGNVFR+ Sbjct: 63 YGFSELYEKELENKDYSGYGFELTFRLVRSEEEDEPPAWALNLLQNMGRYVFNSGNVFRA 122 Query: 124 GDYMDANGPIXXXXXXXXXXXXFIADPLLRAIDTPNGRLEFIQLVGITNDELLAMQVWNT 183 GDY+DANGPI F DP L +DTPNG++EFIQ+VGIT DEL AMQ W T Sbjct: 123 GDYLDANGPICLDADTQLTALAFTHDPELAEMDTPNGKVEFIQMVGITEDELEAMQTWKT 182 Query: 184 LGVLAEMTEHLPLYMTDLQRDSLLKLPAIAEAVRLGSENEGSNTGALYVDQLAWENPAEG 243 LGVL +P Y+TDL R SLL+ P I EAV G +GS+TG L+VDQLAW+ +G Sbjct: 183 LGVLQAGINQIPSYITDLTRPSLLQSPEIVEAVERGMMEDGSSTGFLFVDQLAWQVGKKG 242 Query: 244 ----SVHTLQLGAKQAEIVXXXXXXXXXXXXXXXXAGPEISVSFETGDTPGFEIREELVI 299 H +QLGAKQA+++ G ++++ F+ G++ E+ + Sbjct: 243 WFNKQSHVIQLGAKQADVIGKLLRGRIVKERNLSLVGQDLTIVFKPDHQVGYQENEQEIT 302 Query: 300 LKLDEAAGAALSEIFRPSAGLYPLPGWPELAIRIVPTHITDSEGTIVKTIG 350 + L++ A LS+ P + L ++ +I+ THI + EG +VKTIG Sbjct: 303 ITLNKEAAEELSQNLVPQEKRFALSSLEGISFQIMKTHIKNQEGAVVKTIG 353 >C0ZD96.1 C0ZD96_BREBN Putative aminotransferase Length = 386 Score = 347 bits (891), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 179/345 (51%), Positives = 231/345 (66%), Gaps = 4/345 (1%) Query: 10 GWAAIDEALEQLYGEQEQKHYGTVIPYMLGGPDPLNGISVYEVREPLPHWHFVTYGFSEL 69 GW AID+ + ++YGEQE KHYGT+I Y LGG DPL+GIS Y EP PHWHFVTYGF+EL Sbjct: 42 GWDAIDQEMRKIYGEQEPKHYGTLISYALGGNDPLDGISAYISDEPNPHWHFVTYGFTEL 101 Query: 70 YEKESDDPEHSGYGFELTFRLFKPATEDEPPAWALNLLQNLGRYVFNSGNVFRSGDYMDA 129 YEKES++ E SG+GFELTFRL + E+EPPAWALNLLQN+GRYVFN+GNVF++GD++DA Sbjct: 102 YEKESENEEESGFGFELTFRLARKDDEEEPPAWALNLLQNMGRYVFNTGNVFQAGDHLDA 161 Query: 130 NGPIXXXXXXXXXXXXFIADPLLRAIDTPNGRLEFIQLVGITNDELLAMQVWNTLGVLAE 189 NGPI F+ DP L +DTPNGR++F+Q+VGIT DEL AM WNT GVL Sbjct: 162 NGPICLGADTQLTALAFVTDPQLAEMDTPNGRVQFLQMVGITGDELDAMMAWNTRGVLQS 221 Query: 190 MTEHLPLYMTDLQRDSLLKLPAIAEAVRLGSENEGSNTGALYVDQLAWENPAEGSVH--- 246 ++P Y+TDL+RDSLL+ + +AV+ G E EGS+T L+V QL WE G + Sbjct: 222 GLPYMPFYITDLERDSLLRHSTVTDAVQKGMEQEGSSTAYLFVSQLGWEPGKNGFLKKTP 281 Query: 247 -TLQLGAKQAEIVXXXXXXXXXXXXXXXXAGPEISVSFETGDTPGFEIREELVILKLDEA 305 TL+LGAKQAE++ GP++ V FE G+ P E+++ LD+A Sbjct: 282 STLRLGAKQAEVIGKILRGRMRKGESLSLVGPDVRVVFEAGEKPACIPGEDVIRFVLDDA 341 Query: 306 AGAALSEIFRPSAGLYPLPGWPELAIRIVPTHITDSEGTIVKTIG 350 AL++ P + +P +AI IV T+ITDSEG +VK IG Sbjct: 342 TTLALTKQLLPKESSFEIPSLKGIAINIVKTNITDSEGNVVKVIG 386 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,092,624,929 Number of extensions: 85485209 Number of successful extensions: 123699 Number of sequences better than 1.0e-05: 76 Number of HSP's gapped: 123501 Number of HSP's successfully gapped: 76 Length of query: 350 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 214 Effective length of database: 1,779,438,163 Effective search space: 380799766882 Effective search space used: 380799766882 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)