BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0012.p (368 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8ZXK2.1 A8ZXK2_DESOH FOG: Ankyrin repeat-like protein 71 1e-10 A6TP10.1 A6TP10_ALKMQ von Willebrand factor, type A 70 2e-10 Q1D9Z1.1 Q1D9Z1_MYXXD Putative uncharacterized protein 64 2e-08 C4CFM7.1 C4CFM7_9ACTN F5/8 type C domain-containing protein 64 3e-08 C4CBD3.1 C4CBD3_9ACTN Activator of osmoprotectant transporter ProP 62 8e-08 >A8ZXK2.1 A8ZXK2_DESOH FOG: Ankyrin repeat-like protein Length = 440 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 13/145 (8%) Query: 237 KITASSTLPKSKAGSYTASQIIDGDTATCWCEGVKGSGIGQ--SFTVSFPKKTK----VS 290 KITASS LP K Y A QI D + +T W EG KG GIG+ F F K + V+ Sbjct: 292 KITASSCLPTYKGIEYNAEQISDFNASTAWVEGAKGYGIGEYIEFRYDFSKVAESDYSVN 351 Query: 291 SFKILPGYGKSVSAYLENNSVRKAKI---TFSDGSSFIADFTKETALELP----KDKVTT 343 + I GY K+ + + N+ V++ KI T + D + +P + K Sbjct: 352 TVIINNGYSKNCTTWESNSRVKQLKIYVNTVPHTVIILKDTNDTQTVSMPSIKFEAKKIN 411 Query: 344 SITFTILEVTPGSKYDDTCVSEFAV 368 + F ILEV G+KY DT +SE + Sbjct: 412 IVRFEILEVYKGTKYKDTAISEIQL 436 >A6TP10.1 A6TP10_ALKMQ von Willebrand factor, type A Length = 551 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 19/161 (11%) Query: 227 YHFADKMEVSKITASSTL-PKSKAGS-----YTASQIIDGDTATCWCEGVKGSGIGQSFT 280 Y+ ++ S +TASSTL P+ + + Y ID + T W EG G GIG+ Sbjct: 389 YNLPIELLFSSVTASSTLEPQVEIFTNLRFDYLPYHAIDQSSNTAWVEGASGDGIGEWIR 448 Query: 281 VSFPKKTKVSSFKILPGYGKSVSAYLENNSVRKAKITFSDGSS---FIADFTKET----- 332 + F + T +S I GY ++ +NN +++ +I FS+GSS ++D + Sbjct: 449 IDFLRPTTLSGMYIRNGYWRTAERLRQNNRIKRIRIEFSNGSSEEFNLSDPVNQNFNELL 508 Query: 333 -----ALELPKDKVTTSITFTILEVTPGSKYDDTCVSEFAV 368 L+ T+ + ILEV G ++ DTC+S+ + Sbjct: 509 IGNGQRLDFITSHTTSYVKLEILEVYRGDRWRDTCISDILL 549 >Q1D9Z1.1 Q1D9Z1_MYXXD Putative uncharacterized protein Length = 508 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 17/156 (10%) Query: 230 ADKMEVSKITASSTLPKS---KAGSYTASQIIDGDTATCWCEGVKGSGIGQSFTVSFPKK 286 A+++ ++TASS L A +Y I D D AT W EG KG G G++ P+ Sbjct: 23 ANRLHPRRVTASSFLENGWNKHAQNYLPLYIADDDPATAWVEGAKGRGEGEAIEWWGPEL 82 Query: 287 TKVSSFKIL--PGYGKSVSAYLENNSVRKAKI---------TFSDGSSF---IADFTKET 332 ++ ++++ G+ KS + N RK K+ + G++ + D Sbjct: 83 SRAKTYRLFLRNGFQKSEKLFRANARPRKVKLEPLVQGETGPQTTGTALEMELKDVLGWQ 142 Query: 333 ALELPKDKVTTSITFTILEVTPGSKYDDTCVSEFAV 368 + LP + T++ PG+ YDDTC+S+F V Sbjct: 143 EVRLPVPNKVHGVRLTLVSTYPGTSYDDTCLSDFRV 178 >C4CFM7.1 C4CFM7_9ACTN F5/8 type C domain-containing protein Length = 322 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 6/135 (4%) Query: 238 ITASSTLPKSKAGSY-TASQIIDGDTATCWCEGVK-GSGIGQSFTVSFPKKTKVSSFKIL 295 + ASS LP + SY + +D D AT W EG + +G G+ + + + + + Sbjct: 185 VRASSELPPDEYNSYYGVNNAVDNDMATAWNEGNESNNGEGEWIEIYADTEQVCTQVRFV 244 Query: 296 PGYGKSVSAYLENNSVRKAKITFSDGSSF---IADFT-KETALELPKDKVTTSITFTILE 351 PGY KS Y N + ++FSDG+S I D +E L+L K TT + TI E Sbjct: 245 PGYPKSELVYNNNCRPKNVTVSFSDGTSIDVEIEDIMGQEITLDLDKPVKTTFVRLTINE 304 Query: 352 VTPGSKYDDTCVSEF 366 V PG ++ D V+EF Sbjct: 305 VFPGDQWTDCTVAEF 319 >C4CBD3.1 C4CBD3_9ACTN Activator of osmoprotectant transporter ProP Length = 337 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Query: 236 SKITASSTLPKSKAGSYTA-SQIIDGDTATCWCEGVKGSGIGQ--SFTVSFPKKTKVSSF 292 + ++ SS LP SY + ID + +T W EG G G G+ F+ S P+ VSS Sbjct: 199 TDLSESSELPGDSVTSYYGKNNTIDDNPSTAWNEGADGDGSGEWLEFSASSPQ--LVSSI 256 Query: 293 KILPGYGKSVSAYLENNSVRKAKITFSDGSSFIADFTKETA----LELPKDKVTTSITFT 348 I+ GY KS Y NN R ITFSDG+S + + L + TTS+ T Sbjct: 257 DIVGGYPKSDEVYYNNNRPRDITITFSDGTSVSTTLSDTMGAWQTITLSQPVATTSVRIT 316 Query: 349 ILEVTPGSKYDDTCVSEF 366 I V GS Y+D +E Sbjct: 317 IDSVYTGSMYNDCSFAEI 334 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.130 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,137,048,583 Number of extensions: 85923948 Number of successful extensions: 225282 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 225292 Number of HSP's successfully gapped: 12 Length of query: 368 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 231 Effective length of database: 1,770,017,148 Effective search space: 408873961188 Effective search space used: 408873961188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 132 (55.5 bits)