BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0008.p (360 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2RH70.1 Q2RH70_MOOTA Tryptophanyl-tRNA synthetase EC=6.1.1.2 467 e-130 B8CWI4.1 B8CWI4_HALOH Tryptophanyl-tRNA synthetase EC=6.1.1.2 444 e-123 Q0AZ55.1 Q0AZ55_SYNWW Tryptophanyl-tRNA synthetase EC=6.1.1.2 429 e-118 A9KHY4.1 A9KHY4_CLOPH Tryptophanyl-tRNA synthetase EC=6.1.1.2 399 e-109 Q9RVD6.1 SYW2_DEIRA Tryptophanyl-tRNA synthetase 2 EC=6.1.1.2 322 2e-86 >Q2RH70.1 Q2RH70_MOOTA Tryptophanyl-tRNA synthetase EC=6.1.1.2 Length = 337 Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust. Identities = 210/325 (64%), Positives = 265/325 (81%) Query: 31 RVLTGDRVTGKLHLGHYVGSLQNRVLLQEEYESFVFLADVQALTTHFEQKDLIRSHIREM 90 R+LTGDR TGKLHLGHYVGSL NRV LQ+EY++F+ +ADVQALTT+FE+ + + +RE+ Sbjct: 11 RILTGDRPTGKLHLGHYVGSLINRVRLQDEYDTFLIIADVQALTTNFEEPEKLARDVREV 70 Query: 91 TLDYLSAGIDPEKSTIFIQSMIPEIAELTIYFSMFVSVNSLRHNPTIKAEAKGRGLDELY 150 LDYL+AGIDPEKSTIF+QS++PEIAELTI++SM ++VN+LRHNPTIK+EA RG ++ Sbjct: 71 ALDYLAAGIDPEKSTIFVQSLVPEIAELTIFYSMIITVNTLRHNPTIKSEAAQRGYTDMT 130 Query: 151 YGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELYQPILAEPQALISNT 210 YGFLGYPVSQAADITFCKA ++PVG+DQLPH+EL RK+VRRFN LY P+L EP+AL+ Sbjct: 131 YGFLGYPVSQAADITFCKANLVPVGEDQLPHIELTRKLVRRFNSLYGPVLVEPEALVGEV 190 Query: 211 PRLVGTDGNAKMSKSLGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPEICPIYAYH 270 PRLVG DG AKMSKSL NAI L E++ ++K AVTDPAR+ DPGHP+IC ++AYH Sbjct: 191 PRLVGLDGAAKMSKSLDNAINLSDPPEEVERRVKNAVTDPARIRATDPGHPDICTVFAYH 250 Query: 271 GAFQPEHLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAARPQLVDEILIT 330 AF +PEI E C++G +GC ACK+R+T L +L+ PMRERRA Y A P+LVDEIL+ Sbjct: 251 TAFNKPVIPEIEESCKKGAIGCVACKKRLTATLNELLEPMRERRARYEANPKLVDEILLA 310 Query: 331 GTKHAQGIAKETMQEVREAMKLDYF 355 GT A+ +AKETM +VREAMK++YF Sbjct: 311 GTARARAVAKETMAQVREAMKINYF 335 >B8CWI4.1 B8CWI4_HALOH Tryptophanyl-tRNA synthetase EC=6.1.1.2 Length = 333 Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust. Identities = 197/327 (60%), Positives = 256/327 (78%) Query: 30 ERVLTGDRVTGKLHLGHYVGSLQNRVLLQEEYESFVFLADVQALTTHFEQKDLIRSHIRE 89 +R+LTGDR TGKLHLGHYVGSLQNRV LQ+EY++F+ +ADVQALTT+FE + + +R+ Sbjct: 7 KRILTGDRPTGKLHLGHYVGSLQNRVRLQKEYDTFLIIADVQALTTNFETPEKLSRDVRQ 66 Query: 90 MTLDYLSAGIDPEKSTIFIQSMIPEIAELTIYFSMFVSVNSLRHNPTIKAEAKGRGLDEL 149 + DYL+ GIDPE +TIF+QSM+PEIAELT+++SM V+VN LRHNPTIK+EA G +++ Sbjct: 67 VATDYLAVGIDPEVTTIFVQSMVPEIAELTVFYSMIVTVNQLRHNPTIKSEAAQYGYNDM 126 Query: 150 YYGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELYQPILAEPQALISN 209 YGFLGYPVSQAADITFCKA ++PVG+DQLPH+E R+IVR+FN LY P+ EP+AL+S+ Sbjct: 127 TYGFLGYPVSQAADITFCKANLVPVGEDQLPHIEQTRRIVRKFNNLYAPVFPEPEALVSD 186 Query: 210 TPRLVGTDGNAKMSKSLGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPEICPIYAY 269 PRLVG DG +KMSKSL NAI L + E++ K+++AVTDPAR+ K DPGHPE+C ++ Y Sbjct: 187 IPRLVGLDGKSKMSKSLDNAIYLSDSEEEVNRKVQKAVTDPARIRKTDPGHPEVCTVFEY 246 Query: 270 HGAFQPEHLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAARPQLVDEILI 329 H AF + + EI E C G +GC ACK+R+ L L+ PMRERR Y P +VDEIL+ Sbjct: 247 HKAFNSDEVNEIEEKCRAGKIGCVACKKRLAEVLNNLLEPMRERRVKYEQNPDIVDEILM 306 Query: 330 TGTKHAQGIAKETMQEVREAMKLDYFS 356 GTK + I K+T++EVREAM L+YF Sbjct: 307 AGTKKVREIGKKTLEEVREAMHLNYFK 333 >Q0AZ55.1 Q0AZ55_SYNWW Tryptophanyl-tRNA synthetase EC=6.1.1.2 Length = 331 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 196/326 (60%), Positives = 248/326 (76%) Query: 30 ERVLTGDRVTGKLHLGHYVGSLQNRVLLQEEYESFVFLADVQALTTHFEQKDLIRSHIRE 89 +R+LTGDR TG LHLGHYVGSL NRV LQ+EY+S++ +ADVQALTTH+E+ + + + + Sbjct: 5 KRILTGDRPTGSLHLGHYVGSLANRVKLQDEYDSYIIIADVQALTTHWEKDENLSRDVFQ 64 Query: 90 MTLDYLSAGIDPEKSTIFIQSMIPEIAELTIYFSMFVSVNSLRHNPTIKAEAKGRGLDEL 149 + DYL+AGI PE STIFIQSMIPEI ELT+Y+SMF +VN LRHNPTIK EA GL ++ Sbjct: 65 IATDYLAAGIKPEVSTIFIQSMIPEIHELTMYYSMFTTVNVLRHNPTIKTEAAQHGLSDM 124 Query: 150 YYGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELYQPILAEPQALISN 209 YGFLGYPVSQAADIT KA ++PVG+DQ+PH+EL+RKIVRRFNELY+P+L EPQ L+ + Sbjct: 125 TYGFLGYPVSQAADITIFKADLVPVGEDQIPHIELSRKIVRRFNELYEPVLVEPQVLVGD 184 Query: 210 TPRLVGTDGNAKMSKSLGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPEICPIYAY 269 PRLVG DG KMSKSL NAI L +A+++ K+ AVTDPAR+ K D GHPE+C +YAY Sbjct: 185 VPRLVGLDGKDKMSKSLNNAIFLADSADEVKQKVWNAVTDPARIRKTDLGHPEVCTVYAY 244 Query: 270 HGAFQPEHLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAARPQLVDEILI 329 H F + E+ C +G +GC CK+ +T L +L+ PMRERR Y +P LV +IL Sbjct: 245 HQVFNKAEIEEVEADCRQGRIGCVQCKKNLTAKLNELLEPMRERRQSYLEQPDLVKDILQ 304 Query: 330 TGTKHAQGIAKETMQEVREAMKLDYF 355 GTK A +AKETM +VR AMK++YF Sbjct: 305 EGTKKAHAVAKETMLDVRSAMKINYF 330 >A9KHY4.1 A9KHY4_CLOPH Tryptophanyl-tRNA synthetase EC=6.1.1.2 Length = 331 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/321 (57%), Positives = 239/321 (74%) Query: 30 ERVLTGDRVTGKLHLGHYVGSLQNRVLLQEEYESFVFLADVQALTTHFEQKDLIRSHIRE 89 +R+LTGDR TGKLHLGHYVGSL RV LQ+EY++F+ LAD+QALTTHFE+ +LI + I + Sbjct: 6 KRILTGDRTTGKLHLGHYVGSLSQRVELQDEYDTFILLADIQALTTHFERPELINASIYD 65 Query: 90 MTLDYLSAGIDPEKSTIFIQSMIPEIAELTIYFSMFVSVNSLRHNPTIKAEAKGRGLDEL 149 + +D LS G+DP K TIF QS I IAELTI++SMFVSVN LRHNPTIK EA G ++L Sbjct: 66 VAMDNLSVGLDPNKVTIFQQSQIKAIAELTIFYSMFVSVNVLRHNPTIKTEAANYGYEDL 125 Query: 150 YYGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELYQPILAEPQALISN 209 YGFLGYPVSQ+ADITFC A ++PVG+DQLPH+E+ RKIVRRFN+LY L EP+A +S+ Sbjct: 126 TYGFLGYPVSQSADITFCNADLVPVGEDQLPHMEMTRKIVRRFNDLYGETLHEPKAKLSS 185 Query: 210 TPRLVGTDGNAKMSKSLGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPEICPIYAY 269 RLVG DGNAKM KSLGNAI L A+ ++ K++ AVTDP R+ DPG+PEIC + AY Sbjct: 186 CSRLVGLDGNAKMGKSLGNAIYLSDDAKTVSEKVRNAVTDPNRITLKDPGNPEICVVQAY 245 Query: 270 HGAFQPEHLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAARPQLVDEILI 329 H F P ++ C T+GC ACK+R+ L +L+ P R+RRAYY A V EI++ Sbjct: 246 HKVFNPTEHEDVCNRCRTATIGCVACKKRLAEKLNELLDPFRDRRAYYEAHRSEVKEIIM 305 Query: 330 TGTKHAQGIAKETMQEVREAM 350 G++ A I +ET+ +V++AM Sbjct: 306 AGSEKANKIGEETVAKVKKAM 326 >Q9RVD6.1 SYW2_DEIRA Tryptophanyl-tRNA synthetase 2 EC=6.1.1.2 Length = 351 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 164/324 (50%), Positives = 218/324 (67%), Gaps = 3/324 (0%) Query: 32 VLTGDRVTGKLHLGHYVGSLQNRVLLQEEYESFVFLADVQALTTHFEQKDLIRSHIREMT 91 VLTGDR TG LHLGH GSLQNRV LQ+E E FV LADVQALT HF++ + +R ++ + Sbjct: 25 VLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVA 84 Query: 92 LDYLSAGIDPEKSTIFIQSMIPEIAELTIYFSMFVSVNSLRHNPTIKAEAKGRGLDE-LY 150 LDYL+AG+DP+K+T +QS +PE+AELT+YF V+V+ LR NPT+KAE +G E + Sbjct: 85 LDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVP 144 Query: 151 YGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELYQPILAEPQALISNT 210 GF YPVSQAADI AT++PVGDDQLP LE R+IVRRFN LY P+LAEPQA +S Sbjct: 145 AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRV 204 Query: 211 PRLVGTDGNAKMSKSLGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPEICPIYAYH 270 PRL G DG AKMSKSLGNAIAL +A+++A K+ TDP + +DPG E P++ + Sbjct: 205 PRLPGLDGQAKMSKSLGNAIALGDSADEVARKVMGMYTDPGHLRASDPGRVEGNPVFTFL 264 Query: 271 GAFQPE--HLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAARPQLVDEIL 328 AF P+ + +++ G +G K+ + L ++AP+R RRA Y P V + Sbjct: 265 DAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFV 324 Query: 329 ITGTKHAQGIAKETMQEVREAMKL 352 GT + +A +T+ +VR AM+L Sbjct: 325 TEGTARGREVAAQTLGQVRRAMRL 348 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,131,418,882 Number of extensions: 87213235 Number of successful extensions: 225372 Number of sequences better than 1.0e-05: 1927 Number of HSP's gapped: 220241 Number of HSP's successfully gapped: 2032 Length of query: 360 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 223 Effective length of database: 1,770,017,148 Effective search space: 394713824004 Effective search space used: 394713824004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)