BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0003.p (274 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7P0.1 B3K7P0_9BACI Binding-protein-dependent transport system... 393 e-107 B1DA40.1 B1DA40_9BACL Monosaccharide-transporting ATPase EC=3.6.... 337 8e-91 Q92AS6.1 Q92AS6_LISIN Lin1843 protein 336 1e-90 Q71YT6.1 Q71YT6_LISMF ABC transporter, permease protein 336 1e-90 C1KW31.1 C1KW31_LISMC Putative sugar ABC transporter, permease p... 336 1e-90 >B3K7P0.1 B3K7P0_9BACI Binding-protein-dependent transport systems inner membrane component Length = 272 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/272 (70%), Positives = 217/272 (79%) Query: 3 LRTKHIEKXXXXXXXXXXXXXXXVPFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDL 62 + K IEK +PFIWMI SSFKPENEFT +PPTL P T NY DL Sbjct: 1 MAAKRIEKTVMTVLLIAGGLLMMIPFIWMITSSFKPENEFTAVPPTLLPKEFTMKNYVDL 60 Query: 63 FVKMDFVIYLKNTLIIVLCSFVGLFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVT 122 F K+DF++YLKNTLIIV SFVGLFLNA+AGYAFAKF+FPG K FY++LATMMIPGQVT Sbjct: 61 FTKLDFMVYLKNTLIIVFWSFVGLFLNALAGYAFAKFEFPGNKKLFYLVLATMMIPGQVT 120 Query: 123 MIPTYLIINQLHLVNTMAGIVLPGLVGAFAIFLFRQFMTTIPIDLLEAARLDGAGELRIF 182 MIP YL+IN + L NTMAGIVLPGLVGAF IFLFRQFM+TIP DL+EA+RLDGAGELRIF Sbjct: 121 MIPVYLLINAMGLTNTMAGIVLPGLVGAFGIFLFRQFMSTIPTDLIEASRLDGAGELRIF 180 Query: 183 FQLMVPIVKPVFAVQGILTFIGAWNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQ 242 F+L+VPI KPVFAVQGIL FIGAWNSFLWPLI+AND++LYTLSVGL LLKGQ+G++FGLQ Sbjct: 181 FRLIVPITKPVFAVQGILAFIGAWNSFLWPLIMANDQKLYTLSVGLQLLKGQHGSDFGLQ 240 Query: 243 MAGAAFMVVPXXXXXXXXXXXXXEGYTISGIK 274 MAGAAFMVVP EGYTISG+K Sbjct: 241 MAGAAFMVVPIIIVFSFFQKHIIEGYTISGMK 272 >B1DA40.1 B1DA40_9BACL Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 283 Score = 337 bits (864), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 164/249 (65%), Positives = 196/249 (78%) Query: 26 VPFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDLFVKMDFVIYLKNTLIIVLCSFVG 85 +PFIWMI S+FK E+E IPPT P TF N++ LF KM+F +YLKNTLIIV+ SFVG Sbjct: 35 LPFIWMILSAFKSESEMQNIPPTFLPVDATFDNFKHLFTKMNFGVYLKNTLIIVVFSFVG 94 Query: 86 LFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVTMIPTYLIINQLHLVNTMAGIVLP 145 LF+NAMAG+ FAK+ F G + FY++LATMMIPGQVTMIP YLI+N++HL+NTMAGI+LP Sbjct: 95 LFMNAMAGFGFAKYKFKGGSVLFYLVLATMMIPGQVTMIPIYLILNEMHLINTMAGIILP 154 Query: 146 GLVGAFAIFLFRQFMTTIPIDLLEAARLDGAGELRIFFQLMVPIVKPVFAVQGILTFIGA 205 GLVGAF IFLFRQFM TIP +LLEA RLDGA E R F Q+++PI KP+ AVQGIL FI Sbjct: 155 GLVGAFGIFLFRQFMQTIPDELLEATRLDGASEFRTFMQIVLPISKPILAVQGILAFIAG 214 Query: 206 WNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQMAGAAFMVVPXXXXXXXXXXXXX 265 WNSF+WPLIIANDE+LYTLSVGL+LLKGQYG F LQMAG+ FMV+P Sbjct: 215 WNSFIWPLIIANDEKLYTLSVGLTLLKGQYGGNFALQMAGSTFMVIPIIAIFIIFQRHII 274 Query: 266 EGYTISGIK 274 E ++ISG+K Sbjct: 275 ENFSISGMK 283 >Q92AS6.1 Q92AS6_LISIN Lin1843 protein Length = 276 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 165/249 (66%), Positives = 191/249 (76%) Query: 26 VPFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDLFVKMDFVIYLKNTLIIVLCSFVG 85 +PFIWM+ SS K + E IPPT++P T N+ LF +MDF IYLKNTLIIV SF G Sbjct: 28 LPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFG 87 Query: 86 LFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVTMIPTYLIINQLHLVNTMAGIVLP 145 LFLNAMAGY FAKF F GKNK FY++LATMMIPGQVTMIP YL++N L NTM GIVLP Sbjct: 88 LFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLP 147 Query: 146 GLVGAFAIFLFRQFMTTIPIDLLEAARLDGAGELRIFFQLMVPIVKPVFAVQGILTFIGA 205 GLVGAF IFLFRQFM+TI DLLEAARLDGA E IF+++++PI +PV AVQGILTFI Sbjct: 148 GLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAG 207 Query: 206 WNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQMAGAAFMVVPXXXXXXXXXXXXX 265 WNSFLWPLIIANDE+ YTLSVGL LLKGQYG+ + LQMAGA FMV+P Sbjct: 208 WNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYIL 267 Query: 266 EGYTISGIK 274 +G+ +SG+K Sbjct: 268 KGFNVSGMK 276 >Q71YT6.1 Q71YT6_LISMF ABC transporter, permease protein Length = 276 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 165/249 (66%), Positives = 191/249 (76%) Query: 26 VPFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDLFVKMDFVIYLKNTLIIVLCSFVG 85 +PFIWM+ SS K + E IPPT++P T N+ LF +MDF IYLKNTLIIV SF G Sbjct: 28 LPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFG 87 Query: 86 LFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVTMIPTYLIINQLHLVNTMAGIVLP 145 LFLNAMAGY FAKF F GKNK FY++LATMMIPGQVTMIP YL++N L NTM GIVLP Sbjct: 88 LFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLP 147 Query: 146 GLVGAFAIFLFRQFMTTIPIDLLEAARLDGAGELRIFFQLMVPIVKPVFAVQGILTFIGA 205 GLVGAF IFLFRQFM+TI DLLEAARLDGA E IF+++++PI +PV AVQGILTFI Sbjct: 148 GLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAG 207 Query: 206 WNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQMAGAAFMVVPXXXXXXXXXXXXX 265 WNSFLWPLIIANDE+ YTLSVGL LLKGQYG+ + LQMAGA FMV+P Sbjct: 208 WNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYIL 267 Query: 266 EGYTISGIK 274 +G+ +SG+K Sbjct: 268 KGFNVSGMK 276 >C1KW31.1 C1KW31_LISMC Putative sugar ABC transporter, permease protein Length = 276 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 165/249 (66%), Positives = 191/249 (76%) Query: 26 VPFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDLFVKMDFVIYLKNTLIIVLCSFVG 85 +PFIWM+ SS K + E IPPT++P T N+ LF +MDF IYLKNTLIIV SF G Sbjct: 28 LPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFG 87 Query: 86 LFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVTMIPTYLIINQLHLVNTMAGIVLP 145 LFLNAMAGY FAKF F GKNK FY++LATMMIPGQVTMIP YL++N L NTM GIVLP Sbjct: 88 LFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLP 147 Query: 146 GLVGAFAIFLFRQFMTTIPIDLLEAARLDGAGELRIFFQLMVPIVKPVFAVQGILTFIGA 205 GLVGAF IFLFRQFM+TI DLLEAARLDGA E IF+++++PI +PV AVQGILTFI Sbjct: 148 GLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAG 207 Query: 206 WNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQMAGAAFMVVPXXXXXXXXXXXXX 265 WNSFLWPLIIANDE+ YTLSVGL LLKGQYG+ + LQMAGA FMV+P Sbjct: 208 WNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYIL 267 Query: 266 EGYTISGIK 274 +G+ +SG+K Sbjct: 268 KGFNVSGMK 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.146 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,415,095,166 Number of extensions: 56399126 Number of successful extensions: 177403 Number of sequences better than 1.0e-05: 5996 Number of HSP's gapped: 170033 Number of HSP's successfully gapped: 5997 Length of query: 274 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 140 Effective length of database: 1,798,280,193 Effective search space: 251759227020 Effective search space used: 251759227020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)