BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0002.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7P1.1 B3K7P1_9BACI Binding-protein-dependent transport system... 426 e-117 C2BX61.1 C2BX61_LISGR Sugar ABC superfamily ATP binding cassette... 322 3e-86 Q92AS7.1 Q92AS7_LISIN Lin1842 protein 315 3e-84 Q71YT7.1 Q71YT7_LISMF ABC transporter, permease protein 315 4e-84 C1KW30.1 C1KW30_LISMC Putative sugar ABC transporter, permease p... 315 4e-84 >B3K7P1.1 B3K7P1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/299 (70%), Positives = 238/299 (79%) Query: 1 VSSFVKQWHKNKYPYMFIAPAVXXXXXXXXXXXXXXXXXXXXDMDLVGLADYSNISSAGF 60 + +F+K++++ KYPYMFIAPA+ ++DL GLA+YSNI + GF Sbjct: 3 LQNFIKRFNRYKYPYMFIAPALVLLLTFSIIPIIIALVISFTNIDLAGLANYSNIEAVGF 62 Query: 61 ANYINIFKDPVFLKSMYNTMIYXXXXXXXXXXASMGVALLLNYGTGWLFKSFRVIYYMPS 120 N++N+FKDPVFLKSM+NTM Y +MG ALLLNYGTGWLFK+FRV+YYMPS Sbjct: 63 DNFMNVFKDPVFLKSMFNTMFYVIIGVPLVVMLAMGAALLLNYGTGWLFKTFRVVYYMPS 122 Query: 121 ITNIVAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTLAKLSLILLAFWKSIGLNM 180 ITNIVAVAVVWGYLYN YGLFN++LS FG+PAQQWL DPTLAKLSLILLA WKSIGLNM Sbjct: 123 ITNIVAVAVVWGYLYNSHYGLFNHMLSWFGIPAQQWLNDPTLAKLSLILLAVWKSIGLNM 182 Query: 181 IIFLAALQGIPRSYYEAAEIDGATGWKKLRFITVPLLGFATFFVTITTLIGWIQFFEEPL 240 IIFLAALQGIPRSYYEAAEIDGA+ WKKL +ITVPLL FATFFVTITTLIGWIQFFEEPL Sbjct: 183 IIFLAALQGIPRSYYEAAEIDGASKWKKLLYITVPLLSFATFFVTITTLIGWIQFFEEPL 242 Query: 241 VMTKGGPLNATMSMALFIYNNGFQLSKFGYAAAGSXXXXXXXXXXXXXQFAVKKKEVEY 299 VMTKGGPLN+TMSMALFIYNNGFQLS FGYAAAGS QFAVKKK+VEY Sbjct: 243 VMTKGGPLNSTMSMALFIYNNGFQLSNFGYAAAGSFVLFFIIIVVTIAQFAVKKKDVEY 301 >C2BX61.1 C2BX61_LISGR Sugar ABC superfamily ATP binding cassette transporter, membrane protein Length = 301 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 157/294 (53%), Positives = 203/294 (69%) Query: 5 VKQWHKNKYPYMFIAPAVXXXXXXXXXXXXXXXXXXXXDMDLVGLADYSNISSAGFANYI 64 +KQ+ PY FI+PA+ D+DLVGLADYS I G NYI Sbjct: 6 MKQFFNRHTPYFFISPALLLLILFSLLPIVIAFVISFTDIDLVGLADYSQIHFIGLENYI 65 Query: 65 NIFKDPVFLKSMYNTMIYXXXXXXXXXXASMGVALLLNYGTGWLFKSFRVIYYMPSITNI 124 N+ KDP FLK++ NT+ Y S+G+AL++N+ +F+ FR+I+Y PSITN+ Sbjct: 66 NVMKDPTFLKAIGNTLFYVIIGVPLVIVCSLGIALMINFSQAKIFQFFRLIFYTPSITNV 125 Query: 125 VAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTLAKLSLILLAFWKSIGLNMIIFL 184 VAVAVVW YLYN +GL NY+LS + WLQDP +AK+SLI+LA W++IG+NMIIFL Sbjct: 126 VAVAVVWSYLYNPRFGLLNYLLSFLHIGPIPWLQDPVMAKISLIILAVWRAIGVNMIIFL 185 Query: 185 AALQGIPRSYYEAAEIDGATGWKKLRFITVPLLGFATFFVTITTLIGWIQFFEEPLVMTK 244 AALQGIP++YYEAA++DGA W++L ITVPLL FA FFVT+TT+I W+QFFEEP VMT+ Sbjct: 186 AALQGIPKAYYEAAQLDGANSWQQLFRITVPLLRFAIFFVTVTTMIAWLQFFEEPFVMTQ 245 Query: 245 GGPLNATMSMALFIYNNGFQLSKFGYAAAGSXXXXXXXXXXXXXQFAVKKKEVE 298 GGPL++T S+ALFIY NGFQLSKFGYAAAGS QF +++++ E Sbjct: 246 GGPLDSTTSVALFIYQNGFQLSKFGYAAAGSFILFIVIIIITLIQFRIQRRDNE 299 >Q92AS7.1 Q92AS7_LISIN Lin1842 protein Length = 297 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 158/271 (58%), Positives = 198/271 (73%) Query: 5 VKQWHKNKYPYMFIAPAVXXXXXXXXXXXXXXXXXXXXDMDLVGLADYSNISSAGFANYI 64 +KQ+ PY+FI+PA+ D+DLVGLADYS I+ G NY+ Sbjct: 1 MKQFLNKNTPYLFISPALFLLLLFSLLPILLAFVISFTDIDLVGLADYSKINFVGVDNYV 60 Query: 65 NIFKDPVFLKSMYNTMIYXXXXXXXXXXASMGVALLLNYGTGWLFKSFRVIYYMPSITNI 124 NI +DPVFLKS++NT+ Y S+G+AL++N+ +F+ FR+I+Y PSITN+ Sbjct: 61 NIMQDPVFLKSIFNTLFYVVIGVPLVIVCSLGIALMINFSQAKIFQFFRLIFYTPSITNV 120 Query: 125 VAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTLAKLSLILLAFWKSIGLNMIIFL 184 VAVAVVW YLYN +GL NY+LS L WLQDPT+AKLSLI+LA W++IG+NMIIFL Sbjct: 121 VAVAVVWSYLYNPRFGLLNYLLSFLDLGPVPWLQDPTIAKLSLIILAVWRAIGVNMIIFL 180 Query: 185 AALQGIPRSYYEAAEIDGATGWKKLRFITVPLLGFATFFVTITTLIGWIQFFEEPLVMTK 244 AALQGIPR YYEAA +DGA ++L ITVP+L FA FFVT+TT+IGW+QFFEEP VMT+ Sbjct: 181 AALQGIPREYYEAASLDGANSRQQLFKITVPMLRFAIFFVTVTTMIGWLQFFEEPFVMTE 240 Query: 245 GGPLNATMSMALFIYNNGFQLSKFGYAAAGS 275 GGPL++T S+ALFIY NGFQLSKFGYAAAGS Sbjct: 241 GGPLDSTNSVALFIYQNGFQLSKFGYAAAGS 271 >Q71YT7.1 Q71YT7_LISMF ABC transporter, permease protein Length = 297 Score = 315 bits (806), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 158/271 (58%), Positives = 198/271 (73%) Query: 5 VKQWHKNKYPYMFIAPAVXXXXXXXXXXXXXXXXXXXXDMDLVGLADYSNISSAGFANYI 64 +KQ+ PY+FI+PA+ D+DLVGLADYS I+ G NY+ Sbjct: 1 MKQFLNKNTPYLFISPALFLLLLFSLLPILLAFVISFTDIDLVGLADYSKINFVGVDNYV 60 Query: 65 NIFKDPVFLKSMYNTMIYXXXXXXXXXXASMGVALLLNYGTGWLFKSFRVIYYMPSITNI 124 NI +DPVFLKS++NT+ Y S+G+AL++N+ +F+ FR+I+Y PSITN+ Sbjct: 61 NIMQDPVFLKSIFNTLFYVIIGVPLVIVCSLGIALMINFSQAKIFQFFRLIFYTPSITNV 120 Query: 125 VAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTLAKLSLILLAFWKSIGLNMIIFL 184 VAVAVVW YLYN +GL NY+LS L WLQDPT+AKLSLI+LA W++IG+NMIIFL Sbjct: 121 VAVAVVWSYLYNPRFGLLNYLLSFLDLGPVPWLQDPTIAKLSLIILAVWRAIGVNMIIFL 180 Query: 185 AALQGIPRSYYEAAEIDGATGWKKLRFITVPLLGFATFFVTITTLIGWIQFFEEPLVMTK 244 AALQGIPR YYEAA +DGA ++L ITVP+L FA FFVT+TT+IGW+QFFEEP VMT+ Sbjct: 181 AALQGIPREYYEAASLDGANSRQQLFKITVPMLRFAIFFVTVTTMIGWLQFFEEPFVMTE 240 Query: 245 GGPLNATMSMALFIYNNGFQLSKFGYAAAGS 275 GGPL++T S+ALFIY NGFQLSKFGYAAAGS Sbjct: 241 GGPLDSTNSVALFIYQNGFQLSKFGYAAAGS 271 >C1KW30.1 C1KW30_LISMC Putative sugar ABC transporter, permease protein Length = 297 Score = 315 bits (806), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 158/271 (58%), Positives = 198/271 (73%) Query: 5 VKQWHKNKYPYMFIAPAVXXXXXXXXXXXXXXXXXXXXDMDLVGLADYSNISSAGFANYI 64 +KQ+ PY+FI+PA+ D+DLVGLADYS I+ G NY+ Sbjct: 1 MKQFLNKNTPYLFISPALFLLLLFSLLPILLAFVISFTDIDLVGLADYSKINFVGVDNYV 60 Query: 65 NIFKDPVFLKSMYNTMIYXXXXXXXXXXASMGVALLLNYGTGWLFKSFRVIYYMPSITNI 124 NI +DPVFLKS++NT+ Y S+G+AL++N+ +F+ FR+I+Y PSITN+ Sbjct: 61 NIMQDPVFLKSIFNTLFYVIIGVPLVIVCSLGIALMINFSQAKIFQFFRLIFYTPSITNV 120 Query: 125 VAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTLAKLSLILLAFWKSIGLNMIIFL 184 VAVAVVW YLYN +GL NY+LS L WLQDPT+AKLSLI+LA W++IG+NMIIFL Sbjct: 121 VAVAVVWSYLYNPRFGLLNYLLSFLDLGPVPWLQDPTIAKLSLIILAVWRAIGVNMIIFL 180 Query: 185 AALQGIPRSYYEAAEIDGATGWKKLRFITVPLLGFATFFVTITTLIGWIQFFEEPLVMTK 244 AALQGIPR YYEAA +DGA ++L ITVP+L FA FFVT+TT+IGW+QFFEEP VMT+ Sbjct: 181 AALQGIPREYYEAASLDGANSRQQLFKITVPMLRFAIFFVTVTTMIGWLQFFEEPFVMTE 240 Query: 245 GGPLNATMSMALFIYNNGFQLSKFGYAAAGS 275 GGPL++T S+ALFIY NGFQLSKFGYAAAGS Sbjct: 241 GGPLDSTNSVALFIYQNGFQLSKFGYAAAGS 271 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.141 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,527,850,911 Number of extensions: 55317561 Number of successful extensions: 185818 Number of sequences better than 1.0e-05: 5672 Number of HSP's gapped: 178697 Number of HSP's successfully gapped: 5673 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)