BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0001.p (417 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7P2.1 B3K7P2_9BACI Extracellular solute-binding protein family 1 520 e-145 B1DA42.1 B1DA42_9BACL Extracellular solute-binding protein family 1 405 e-111 Q92AS8.1 Q92AS8_LISIN Lin1841 protein 379 e-103 Q4ET28.1 Q4ET28_LISMO ABC transporter, substrate-binding protein 378 e-103 Q71YT8.1 Q71YT8_LISMF ABC transporter, substrate-binding protein 378 e-103 >B3K7P2.1 B3K7P2_9BACI Extracellular solute-binding protein family 1 Length = 404 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 249/407 (61%), Positives = 319/407 (78%), Gaps = 10/407 (2%) Query: 13 LLGFSLVAAGC--GSSKNESASSDNKT---LKVWFMGTADTVTPIAKMYEEKNPGIKVEV 67 +L FS+V AGC GS K + S LKVW MG +T + K YEEKNPG+KV V Sbjct: 1 MLVFSVVLAGCSGGSEKADGGSEGGGGKKELKVWLMGD-ETDETLIKQYEEKNPGVKVSV 59 Query: 68 QAIPWDNAHDKLLTAVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAENFF 127 Q+IPW +AHDKLLTAVASK+GPDVVQMGTTWIPEFA AGAL D+ PY+E+YP++K EN+F Sbjct: 60 QSIPWGSAHDKLLTAVASKSGPDVVQMGTTWIPEFAQAGALLDLTPYLEQYPNLKPENYF 119 Query: 128 DGAVQTTKYQDKTVAIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVAKGGA 187 DGAVQT Y DK V IP+YVETR +FYRTD+L EVGYPEGPKTWDE+KDA +KL A+G Sbjct: 120 DGAVQTMSYDDKVVGIPWYVETRVLFYRTDILAEVGYPEGPKTWDEMKDAGQKLAARGN- 178 Query: 188 GHYALPIEAKDSIYTAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDEGLSP 247 G+YA+ I+AKD Y ++FAWQNGS +ID NRKP FN+P ++ + +LKSFYD G++P Sbjct: 179 GNYAITIDAKDMNYLSMFAWQNGSAMIDE---NRKPHFNEPEFMGAMEYLKSFYDTGMTP 235 Query: 248 KGTDLDTVAAFKDGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPAKKTNTSSIGGADL 307 +DLD AAFKDG MFISGPWMIQ VK+KAPEI+GKWA TTLPAK+ N S +GGA++ Sbjct: 236 LASDLDLFAAFKDGQFPMFISGPWMIQGVKDKAPEIEGKWATTTLPAKENNASFLGGANM 295 Query: 308 SIFNYSKNPDEAAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDALKDPMIQAFGKQLE 367 S+F+ +KN DEA KFI+FM+EQ++QL Y+ S ++PA+K+AWE+ +DP+ FGKQLE Sbjct: 296 SVFSSTKNADEAVKFISFMSEQESQLTNYDVSKNLPAIKSAWEDKRFEDPIFATFGKQLE 355 Query: 368 NSRPAPMVTEYEEIAKAAMASFEQITVGGADTQTELDKLNAKANELL 414 N+RP P + E++ +++ A+A+FE+ITVGGAD +TE+D+LNAKA E+L Sbjct: 356 NARPVPFIKEWDAVSQEAIAAFERITVGGADIKTEMDQLNAKATEIL 402 >B1DA42.1 B1DA42_9BACL Extracellular solute-binding protein family 1 Length = 424 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/421 (47%), Positives = 292/421 (69%), Gaps = 20/421 (4%) Query: 9 ITSALLGFSL---VAAGCGSSKNESASSDNK---------TLKVWFMGT-ADTVTPIAKM 55 +T+ L G L + + CG +K E+ S+ ++ TL VW MG A ++ IA+ Sbjct: 7 LTATLAGSVLLMGILSACGGNKAENNSTADQGSTGKGGKVTLNVWGMGEEAKSLPKIAEQ 66 Query: 56 YEEKNPGIKVEVQAIPWDNAHDKLLTAVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYI 115 +E +NP IK+ VQ +PWD AHDKLLTAVASK GPDVVQMGTTWIPEFA AGAL D++ I Sbjct: 67 FEAENPDIKINVQPLPWDTAHDKLLTAVASKKGPDVVQMGTTWIPEFANAGALMDLSSDI 126 Query: 116 EKYPSMKAENFFDGAVQTTKYQDKTVAIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELK 175 YP + NF+DG++ TTKY KTV +P+Y++TR ++YRTDLL EVGY + PKTWDELK Sbjct: 127 ANYPELADSNFYDGSLNTTKYDGKTVGVPWYIDTRVLYYRTDLLKEVGYDQAPKTWDELK 186 Query: 176 DASKKLVAKGGAGHYALPIEAKDSIYTAIFAWQNGSELIDXXXXNRKPQFNQPAYVETIN 235 DA+ KL A+ GA Y + ++ K+ +FA QNGS+LID KP FN+P +VE ++ Sbjct: 187 DAADKLKAR-GANKYGISLDVKEQTLMFMFARQNGSKLID----GNKPLFNEPQFVEAVD 241 Query: 236 FLKSFYDEGLSPKGTDLDTVAAFK-DGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPA 294 +L SF+ +G +P +D VA FK DG + MFISGPWM++ + ++APE+ GKWA LPA Sbjct: 242 YLNSFFKDGDAPLDLGIDIVAGFKGDGILPMFISGPWMVKLINDQAPELKGKWATAVLPA 301 Query: 295 KKTNTSSIGGADLSIFNYSKNPDEAAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDAL 354 K+ N S++GG++LS+F Y+ + +EA KF+A+M++ + QLK+ E +N++P+ K AWE+ AL Sbjct: 302 KENNISALGGSNLSVFQYTDHKEEAMKFLAYMSKPETQLKWLELANALPSTKKAWEDPAL 361 Query: 355 -KDPMIQAFGKQLENSRPAPMVTEYEEIAKAAMASFEQITVGGADTQTELDKLNAKANEL 413 DP ++ G+Q+++S P P++ +E++A+ A+ SFE++ G TQ E++ N KA ++ Sbjct: 362 TSDPNLKVIGEQMKSSEPMPLLKPWEQVAQEALNSFEKVYRGQTKTQDEMNSFNKKATDI 421 Query: 414 L 414 L Sbjct: 422 L 422 >Q92AS8.1 Q92AS8_LISIN Lin1841 protein Length = 414 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/397 (50%), Positives = 270/397 (68%), Gaps = 11/397 (2%) Query: 23 CGSSKNESASSDNKTLKVWFMGT-ADTVTPIAKMYEEKNPGIKVEVQAIPWDNAHDKLLT 81 CG SK+++ SSD+K L VW MG A ++ +A+ + K+ GI+V+VQ IPW NAHDKLLT Sbjct: 22 CGGSKDDANSSDSKVLNVWAMGDEAKSLKELAQKFT-KDTGIEVKVQVIPWANAHDKLLT 80 Query: 82 AVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAENFFDGAVQTTKYQDKTV 141 AVASK+GPDVVQMGTTW+PEF AGAL D+ +EK +M ++ FF G+V+TT++ KT Sbjct: 81 AVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTY 140 Query: 142 AIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVAKGGAGHYALPIEAKDSIY 201 +P+Y ETR +FYRTDLL +VGY E PKTWDEL DA+ KL +K G Y I+ + Sbjct: 141 GVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKL-SKRGKDMYGFAIDPNEQTT 199 Query: 202 TAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDEGLSPKGTD--LDTVAAF- 258 IF QNGS L D + P FN+ +V+T+ +L SF G +P TD LD +F Sbjct: 200 GFIFGRQNGSPLFD---KDGTPVFNKKPFVDTVTYLDSFIKNGSAPD-TDLGLDASQSFG 255 Query: 259 KDGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPAKKTNTSSIGGADLSIFNYSKNPDE 318 DG + MF+SGPWM+ T+K+ AP+IDGKWA LP K+ N SS+GGA+LSIF YS D+ Sbjct: 256 GDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVLPKKENNESSLGGANLSIFKYSNKKDD 315 Query: 319 AAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDALK-DPMIQAFGKQLENSRPAPMVTE 377 A KF+ +M++ D QL + + +NSMPA AWE+D LK DP + FG+Q++ + P P++ + Sbjct: 316 ALKFMDYMSQPDVQLSWLKDTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQ 375 Query: 378 YEEIAKAAMASFEQITVGGADTQTELDKLNAKANELL 414 +EEIA+ S+EQI GGAD QT++D N + LL Sbjct: 376 FEEIAQLYGKSWEQIYRGGADVQTQMDTFNDQVEALL 412 >Q4ET28.1 Q4ET28_LISMO ABC transporter, substrate-binding protein Length = 414 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/397 (49%), Positives = 270/397 (68%), Gaps = 11/397 (2%) Query: 23 CGSSKNESASSDNKTLKVWFMGT-ADTVTPIAKMYEEKNPGIKVEVQAIPWDNAHDKLLT 81 CG SK+++ S D+K L VW MG A ++ +A+ + K+ GI+V+VQ IPW NAHDKLLT Sbjct: 22 CGGSKDDANSGDSKVLNVWAMGDEAKSLKELAQKFT-KDTGIEVKVQVIPWANAHDKLLT 80 Query: 82 AVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAENFFDGAVQTTKYQDKTV 141 AVASK+GPDVVQMGTTW+PEF AGAL D+ +EK +M ++ FF G+V+TT++ KT Sbjct: 81 AVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTY 140 Query: 142 AIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVAKGGAGHYALPIEAKDSIY 201 +P+Y ETR +FYRTDLL +VGY E PKTWDEL DA+ KL +K G Y I+ + Sbjct: 141 GVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKL-SKRGKDMYGFAIDPNEQTT 199 Query: 202 TAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDEGLSPKGTD--LDTVAAF- 258 IF QNGS L D + +P FN+ +V+T+ +L SF G +P TD LD +F Sbjct: 200 GFIFGRQNGSPLFD---KDGQPVFNKKPFVDTVTYLDSFIKNGSAPD-TDLGLDASQSFG 255 Query: 259 KDGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPAKKTNTSSIGGADLSIFNYSKNPDE 318 DG + MF+SGPWM+ T+K+ AP+IDGKWA LP K+ N SS+GGA+LSIF YS D+ Sbjct: 256 GDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVLPKKENNESSLGGANLSIFKYSDKKDD 315 Query: 319 AAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDALK-DPMIQAFGKQLENSRPAPMVTE 377 A KF+ +M++ D QL + + +NSMPA AWE+D LK DP + FG+Q++ + P P++ + Sbjct: 316 ALKFMDYMSQPDVQLSWLKDTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQ 375 Query: 378 YEEIAKAAMASFEQITVGGADTQTELDKLNAKANELL 414 +EEIA+ S+EQI GGAD QT++D N + LL Sbjct: 376 FEEIAQLYGKSWEQIYRGGADVQTQMDTFNDQVETLL 412 >Q71YT8.1 Q71YT8_LISMF ABC transporter, substrate-binding protein Length = 414 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/397 (49%), Positives = 271/397 (68%), Gaps = 11/397 (2%) Query: 23 CGSSKNESASSDNKTLKVWFMGT-ADTVTPIAKMYEEKNPGIKVEVQAIPWDNAHDKLLT 81 CG SK+++ S D+K L VW MG A ++ +A+ + K+ GI+V+VQ IPW NAHDKLLT Sbjct: 22 CGGSKDDANSGDSKVLNVWAMGDEAKSLKELAQKFT-KDTGIEVKVQVIPWANAHDKLLT 80 Query: 82 AVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAENFFDGAVQTTKYQDKTV 141 AVASK+GPDVVQMGTTW+PEF AGAL D+ +EK +M ++ FF G+V+TT++ KT Sbjct: 81 AVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTY 140 Query: 142 AIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVAKGGAGHYALPIEAKDSIY 201 +P+Y ETR +FYRTDLL +VGY E PKTWDEL DA+ KL +K G Y I+ + Sbjct: 141 GVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKL-SKRGKDMYGFAIDPNEQTT 199 Query: 202 TAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDEGLSPKGTD--LDTVAAF- 258 IF QNGS L D + +P FN+ +V+T+++L SF G +P TD LD +F Sbjct: 200 GFIFGRQNGSPLFD---KDGQPVFNKKPFVDTVSYLDSFIKNGSAPD-TDLGLDASQSFG 255 Query: 259 KDGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPAKKTNTSSIGGADLSIFNYSKNPDE 318 DG + MF+SGPWM+ T+K+ AP+IDGKWA LP K+ N SS+GGA+LSIF YS D+ Sbjct: 256 GDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVLPKKENNESSLGGANLSIFKYSDKKDD 315 Query: 319 AAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDALK-DPMIQAFGKQLENSRPAPMVTE 377 A KF+ +M++ D QL + + +NSMPA AWE+D LK DP + FG+Q++ + P P++ + Sbjct: 316 ALKFMDYMSQPDVQLSWLKDTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQ 375 Query: 378 YEEIAKAAMASFEQITVGGADTQTELDKLNAKANELL 414 +EEIA+ S+EQI GGAD QT++D N + LL Sbjct: 376 FEEIAQLYGKSWEQIYRGGADVQTQMDTFNDQVEALL 412 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.129 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,469,065,553 Number of extensions: 102437096 Number of successful extensions: 207180 Number of sequences better than 1.0e-05: 3070 Number of HSP's gapped: 203796 Number of HSP's successfully gapped: 3082 Length of query: 417 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 279 Effective length of database: 1,760,596,133 Effective search space: 491206321107 Effective search space used: 491206321107 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)