BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0009.p (560 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q643B1.1 Q643B1_STRHY Putative uncharacterized protein mppY 202 9e-50 C3AK71.1 C3AK71_BACMY Putative uncharacterized protein 194 1e-47 C3B235.1 C3B235_BACMY Putative uncharacterized protein 191 2e-46 C3BIT7.1 C3BIT7_9BACI Putative uncharacterized protein 191 2e-46 Q1IMV1.1 Q1IMV1_ACIBL Putative uncharacterized protein 177 2e-42 >Q643B1.1 Q643B1_STRHY Putative uncharacterized protein mppY Length = 543 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 151/509 (29%), Positives = 235/509 (46%), Gaps = 27/509 (5%) Query: 10 LARADFLERTRRYSXXXXXXXXXXXXXXXXPPADSNYVTFYLGNYRGVYNSAWVGGTVAV 69 LA ADF +R RR + P +D+ ++ +G++RG+YNSA+VG A+ Sbjct: 5 LAVADFRDRVRRPAYVVILAAAVALGYVAVPDSDAKWMIMQIGDHRGIYNSAYVGMVTAL 64 Query: 70 STTMFLTLVGFFLVKNSIDRDLRTRVGFIISGTPLKKRHYLLGKALSNFAVLSVIAFLMM 129 ++ +++TL GF++V+NSI+RD TRVG +++ TPL+ Y+LGK LSN +LS + ++ Sbjct: 65 ASGLWITLGGFYIVRNSIERDRSTRVGQLLAATPLRTTAYMLGKFLSNLMLLSSMLVVLA 124 Query: 130 VVALLMQLIRGEDMTIHILDIVLPFLIVVFPQXXXXXXXXXXFESRTLLRGAAGNLIYLA 189 + AL+MQL RGE I ++ + PFL++ P FES LLR GN+++ Sbjct: 125 LTALVMQLARGESHDIDLIALWQPFLLIALPLVALTAALALLFESLPLLRTGLGNILWFC 184 Query: 190 LFIATVTISINNGNLSTGI----ISGQMQNDLKQINPAYDGEFGQGIMFLDKPLSLFQWH 245 +++ T G GI + M +D+ + G F G+ +LDKPL LF Sbjct: 185 IWMVVSTAGQGPGLPLDGIGVNSVVRSMYDDMVAQHIDVTGAFSLGLTYLDKPLGLFT-- 242 Query: 246 GMHWSG--SIVGMQXXXXXXXXXXXXXXXXXXKGFAELPASRQGQAYSRRSRRAGPEKKA 303 W G G F +R R +A P Sbjct: 243 ---WDGFTPTAGYVLGRVTLLLIAVVIAMLPALWFGRFDPARTWLGQGRTPEQA-PADGV 298 Query: 304 VSPL----SGXXXXXXXXXXXXXXXXXXXXTPVVYRFR------FMALVKAELGLMLKGS 353 V P+ G + R R + + E+ ++L+G Sbjct: 299 VQPVFIDEVGPGTPPLSVQGHGGASPSRPTVATLLRTRPEPGAVTLRVWAGEVRILLQGV 358 Query: 354 SWLWFAVGAAXXXXXXXXX--XDNSFSFFWPLAWIWPLTLWSAMGCREVMHGTHLFLAAS 411 W W+ GAA PL+WIWP+ +WS +G + + L A Sbjct: 359 RWWWW-TGAAFLMIAALSSPGIHGIIRVMLPLSWIWPVLIWSRLGTQRHEYHVDGMLGAY 417 Query: 412 PKLIARQLPAIWAAGYIVTAAAGGGILVRLLIEGDMVHALYWLLGSLFIPTLALVSGVIT 471 P + R++ A WAAG +TA AG G L+RL+ D W+ G+LFIP+LAL G ++ Sbjct: 418 PA-VRRRVFAEWAAGLTITAVAGIGPLIRLVAAADWFGLAGWVGGALFIPSLALTLGTLS 476 Query: 472 HSKKLFEVLYMLLWYIGPFNQAPGVNFLG 500 + +LF+ +Y+ LWY N P +F+G Sbjct: 477 RTHRLFQAVYLPLWY-SVANGLPIFDFMG 504 >C3AK71.1 C3AK71_BACMY Putative uncharacterized protein Length = 506 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 138/468 (29%), Positives = 220/468 (47%), Gaps = 26/468 (5%) Query: 40 PPADSNYVTFYLGNYRGVYNSAWVGGTVAVSTTMFLTLVGFFLVKNSIDRDLRTRVGFII 99 P A + Y FYLG RG+YNS W+GG A+++T+F+ L+GF+++++ I D + VG +I Sbjct: 22 PAASAGYEIFYLGGVRGIYNSNWLGGMGAMTSTLFIWLLGFYMLRSQISDDQQLGVGQLI 81 Query: 100 SGTPLKKRHYLLGKALSNFAVLSVIAFLMMVVALLMQLIRGEDMTIHILDIVLPFLIVVF 159 + +P+ K Y+ K +SNF VL VI + ++ ++MQ IRGED++ + + P +VF Sbjct: 82 AASPISKFQYIFSKTISNFIVLVVIETVFIIAFMVMQFIRGEDLSFQLGGYLYPLFYIVF 141 Query: 160 PQXXXXXXXXXXFESRTLLRGAAGNLIYLALFIATVTISINNGN-----LSTGIISGQMQ 214 P F+ L+G GN+++ L++ +S N GII M Sbjct: 142 PSLLLLAAFTTFFDVFPGLKGVVGNIVFFFLWVLLAIMSFEMSNRYLDVFGLGIIRSDMI 201 Query: 215 NDLKQINPAYDGEFGQGIMF--LDKPLSLFQWHGMHWSGSIVGMQXXXXXXXXXXXXXXX 272 +D + G G G + ++ + F W G+ W I+ Sbjct: 202 HDAMREYEFLRGTNGGGFGYNPVEGKIKTFHWDGLTWDAEILVTSLVWIGMAMLLIWLTS 261 Query: 273 XXXKGFAELPASRQGQAYSRRSRRAGPEKKAVSPLSGXXXXXXXXXXXXXXXXXXXXTPV 332 F ++ + R KK ++ T Sbjct: 262 LVFNRFLTFTKVKE------KVREVEGNKKTIA--------VNEQNHSSFILTSITKTKS 307 Query: 333 VYRFRFMALVKAELGLMLKGSSWLWFAVGAAXXXXXXXXXXDNSFSFFWPLAWIWPLTLW 392 + FR L+KAEL +MLKG + W+ + D S + P+ IWP+ +W Sbjct: 308 ISMFR---LIKAELSIMLKGFTIWWYVIAIGLIAFGLICPVDISKGWL-PIIIIWPIAIW 363 Query: 393 SAMGCREVMHGTHLFLAASPKLIARQLPAIWAAGYIVTAAAGGGILVRLLIEGDMVHALY 452 S M RE +GT + +S + + A W +G IV G++++ ++ D+ Sbjct: 364 SQMMTREKYYGTDQIIISSCSPLYK-FFATWISGVIVGLIISSGLIIQFILIEDIAFLFS 422 Query: 453 WLLGSLFIPTLALVSGVITHSKKLFEVLYMLLWYIGPFNQAPGVNFLG 500 WL G +FIPTLALV GV + + KLFEV+Y+LLWY+GP N P V+FLG Sbjct: 423 WLSGIVFIPTLALVFGVWSRTHKLFEVVYILLWYLGPVNHLPYVDFLG 470 >C3B235.1 C3B235_BACMY Putative uncharacterized protein Length = 506 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 219/468 (46%), Gaps = 26/468 (5%) Query: 40 PPADSNYVTFYLGNYRGVYNSAWVGGTVAVSTTMFLTLVGFFLVKNSIDRDLRTRVGFII 99 P A + Y FYLG RG+YNS W+GG A+++T+F+ L+GF+++++ I D + VG +I Sbjct: 22 PAASAGYEIFYLGGVRGIYNSNWLGGMGAMTSTLFIWLLGFYMLRSQISDDQQLGVGQLI 81 Query: 100 SGTPLKKRHYLLGKALSNFAVLSVIAFLMMVVALLMQLIRGEDMTIHILDIVLPFLIVVF 159 + + + K Y+ K +SNF VL VI + ++ ++MQ IRGED++ + + P +VF Sbjct: 82 AASAISKFQYIFSKTISNFIVLVVIETVFIIAFMVMQFIRGEDLSFQLGGYLYPLFYIVF 141 Query: 160 PQXXXXXXXXXXFESRTLLRGAAGNLIYLALFIATVTISINNGN-----LSTGIISGQMQ 214 P F+ L+G GN+++ L++ +S N GII M Sbjct: 142 PSLLLLAAFTTFFDVFPGLKGVVGNIVFFFLWVLLAIMSFEMSNRYLDVFGLGIIRSDMI 201 Query: 215 NDLKQINPAYDGEFGQGIMF--LDKPLSLFQWHGMHWSGSIVGMQXXXXXXXXXXXXXXX 272 +D + G G G + ++ + F W G+ W I+ Sbjct: 202 HDAMREYEFLRGTNGGGFGYNPVEGKIKTFHWDGLTWDAEILVTSLVWIGMAMLLIWLTS 261 Query: 273 XXXKGFAELPASRQGQAYSRRSRRAGPEKKAVSPLSGXXXXXXXXXXXXXXXXXXXXTPV 332 F ++ + R KK ++ T Sbjct: 262 LVFNRFLTFTKVKE------KVREVEGNKKTIA--------VNEQNHSSFILTSITKTKS 307 Query: 333 VYRFRFMALVKAELGLMLKGSSWLWFAVGAAXXXXXXXXXXDNSFSFFWPLAWIWPLTLW 392 + FR L+KAEL +MLKG + W+ + D S + P+ IWP+ +W Sbjct: 308 ISMFR---LIKAELSIMLKGFTIWWYVIAIGLIAFGLICPVDISKGWL-PIIIIWPIAIW 363 Query: 393 SAMGCREVMHGTHLFLAASPKLIARQLPAIWAAGYIVTAAAGGGILVRLLIEGDMVHALY 452 S M RE +GT + +S + + A W +G IV G++++ ++ D+ Sbjct: 364 SQMMTREKYYGTDQIIISSCSPLYK-FFATWISGVIVGLIISSGLIIQFILIEDISFLFS 422 Query: 453 WLLGSLFIPTLALVSGVITHSKKLFEVLYMLLWYIGPFNQAPGVNFLG 500 WL G +FIPTLALV GV + + KLFEV+Y+LLWY+GP N P V+FLG Sbjct: 423 WLSGIVFIPTLALVFGVWSRTHKLFEVVYILLWYLGPVNHLPYVDFLG 470 >C3BIT7.1 C3BIT7_9BACI Putative uncharacterized protein Length = 506 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 140/473 (29%), Positives = 222/473 (46%), Gaps = 36/473 (7%) Query: 40 PPADSNYVTFYLGNYRGVYNSAWVGGTVAVSTTMFLTLVGFFLVKNSIDRDLRTRVGFII 99 P A + Y FYLG RGVYNS W+GG A+++T+F+ L+GF+++++ I D + VG +I Sbjct: 22 PAASAGYEIFYLGGVRGVYNSNWLGGMGAMTSTLFIWLLGFYMLRSQISDDQQLGVGQLI 81 Query: 100 SGTPLKKRHYLLGKALSNFAVLSVIAFLMMVVALLMQLIRGEDMTIHILDIVLPFLIVVF 159 + +P+ K Y+ K +SNF VL VI + ++ ++MQ IRGED++ + + P +VF Sbjct: 82 AASPISKFQYIFSKTISNFIVLVVIETVFIIAFMVMQFIRGEDLSFQLGGYLYPLFYIVF 141 Query: 160 PQXXXXXXXXXXFESRTLLRGAAGNLIYLALFIATVTISINNGN-----LSTGIISGQMQ 214 P F+ L+G GN+++ L++ +S N GII M Sbjct: 142 PSLLLLAAFTIFFDVFPGLKGVVGNIVFFFLWVLLAIMSFEMSNRYLDVFGLGIIRSDMI 201 Query: 215 ND-------LKQINPAYDGEFGQGIMFLDKPLSLFQWHGMHWSGSIVGMQXXXXXXXXXX 267 +D L++ N G FG ++ + F W G+ W ++ Sbjct: 202 HDAMREYEFLRETN---GGGFGYNP--VEGKIKTFHWDGLTWDAEMLVTSLVWIGMAMLL 256 Query: 268 XXXXXXXXKGFAELPASRQGQAYSRRSRRAGPEKKAVSPLSGXXXXXXXXXXXXXXXXXX 327 F ++ + R KK ++ Sbjct: 257 IWLTSLVFNRFLTFTKVKE------KVREVEGNKKTIA--------VNEQNHNSFIFTSI 302 Query: 328 XXTPVVYRFRFMALVKAELGLMLKGSSWLWFAVGAAXXXXXXXXXXDNSFSFFWPLAWIW 387 T + FR L+KAEL +MLKG + W+ + D S + P+ IW Sbjct: 303 TKTKSISMFR---LIKAELSIMLKGFTIWWYVIAIGLIAFGLICPVDISKGWL-PIIIIW 358 Query: 388 PLTLWSAMGCREVMHGTHLFLAASPKLIARQLPAIWAAGYIVTAAAGGGILVRLLIEGDM 447 P+ +WS M RE +GT + +S + + A W +G IV G++++ ++ D+ Sbjct: 359 PIAIWSQMMTREKYYGTDQIIISSCSPLYK-FFATWISGVIVGLIISSGLIIQFILIEDI 417 Query: 448 VHALYWLLGSLFIPTLALVSGVITHSKKLFEVLYMLLWYIGPFNQAPGVNFLG 500 WL G +FIPTLALV GV + + KLFEV+Y+LLWY+GP N P V+FLG Sbjct: 418 SFLFSWLSGIVFIPTLALVFGVWSRTHKLFEVMYILLWYLGPVNHLPYVDFLG 470 >Q1IMV1.1 Q1IMV1_ACIBL Putative uncharacterized protein Length = 542 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 146/523 (27%), Positives = 225/523 (43%), Gaps = 65/523 (12%) Query: 5 HTIYHLARADFLERTRRYSXXXXXXXXXXXXXXXXPPADSNYVTFYLGNYRGVYNSAWVG 64 H ++ +A+ADF ER RR A + T L RGV+NSAW Sbjct: 4 HKVWAVAKADFKERMRRAPAWMAMIVGGFLCYL----AVTGKATVTLPFARGVWNSAWSA 59 Query: 65 GTVAVSTTMFLTLVGFFLVKNSIDRDLRTRVGFIISGTPLKKRHYLLGKALSNFAVLSVI 124 GT+A +LTLV FF+V+++I RD T G +++ +PL YLLGKALSNFAV+ I Sbjct: 60 GTMATLAANYLTLVCFFVVRSAIQRDEETGAGRLVAASPLSNYAYLLGKALSNFAVVLSI 119 Query: 125 AFLMMVVALLMQLIRGEDMTIHILDIVLPFLIVVFPQXXXXXXXXXXFESRTLLRGAAGN 184 + ++ A ++Q + E + + + PFL + P FE L+ GN Sbjct: 120 GSIFLLAAPVLQWVHHEGYPFNPWEFINPFLYMTVPSAALVAAVAVFFECHPWLKRGIGN 179 Query: 185 LIYLALFIATVTISINNGNLSTGIIS--GQMQNDLKQINPAYDGEFGQGIMFLDKPL--- 239 +IY+ L++ ++ S G T + G M++ QGI+ ++ L Sbjct: 180 VIYIFLWVESLRESAEYGRAWTDAVGFYGFMES-------GRAAALAQGIVLKERGLNIG 232 Query: 240 -------SLFQWHGMHWSGSIVGMQXXXXXXXXXXXXXXXXXXKGFA---------ELPA 283 ++F WHG ++G V ++ K F +PA Sbjct: 233 HAQYDHWNIFTWHGFQFTGQQVLLRLEWFAVAAVLVFAATYFFKRFNPDAKAALRFPVPA 292 Query: 284 SRQGQAYSRRSRRAGPEKKAVSPLSGXXXXXXXXXXXXXXXXXXXXTPVVYRFRFMALVK 343 + + S + E +S + G +V + RF +V+ Sbjct: 293 FLKRKKKEETSGKWETEIARLSAIGG----------------------MVGKGRFFGIVR 330 Query: 344 AELGLMLKG-SSWLWFAVGAAXXXXXXXXXXDNS-----FSFFWPLAWIWPLTLWSAMGC 397 AEL L+LK +++F +G A D +F WI P+ +WS MG Sbjct: 331 AELKLLLKSIPKFVYFLLGFANFLALMPHEKDGPTGPGVLAFL----WIVPVIVWSNMGA 386 Query: 398 REVMHGTHLFLAASPKLIARQLPAIWAAGYIVTAAAGGGILVRLLIEGDMVHALYWLLGS 457 RE + ++P RQLP W AG+++ G+ VR LI D H WL G+ Sbjct: 387 REQAPHARPLIFSAPHSCLRQLPVEWVAGFVIALGISFGVAVRDLIARDWQHLATWLAGA 446 Query: 458 LFIPTLALVSGVITHSKKLFEVLYMLLWYIGPFNQAPGVNFLG 500 FI +LAL G + +LF+ LY WY+ N AP ++F G Sbjct: 447 AFIASLALACGTWSRGTRLFQGLYCGWWYLA-MNNAPNMDFTG 488 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.141 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,838,124,596 Number of extensions: 104975328 Number of successful extensions: 359907 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 359876 Number of HSP's successfully gapped: 30 Length of query: 560 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 419 Effective length of database: 1,732,333,088 Effective search space: 725847563872 Effective search space used: 725847563872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 134 (56.2 bits)