BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0008.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2WFD3.1 C2WFD3_BACCE ABC transporter MppX 315 3e-84 Q1IMV2.1 Q1IMV2_ACIBL ABC transporter, ATPase subunit 312 2e-83 C3AK70.1 C3AK70_BACMY ABC transporter MppX 312 3e-83 C3B234.1 C3B234_BACMY ABC transporter MppX 311 5e-83 C1VC34.1 C1VC34_9EURY ABC-type multidrug transport system, ATPas... 288 3e-76 >C2WFD3.1 C2WFD3_BACCE ABC transporter MppX Length = 296 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 158/287 (55%), Positives = 198/287 (68%), Gaps = 1/287 (0%) Query: 2 LVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTWN 61 L+IE V KRY ++D + PNGAGKSTLMRILATI QPT G V WN Sbjct: 3 LIIEHVQKRYGGKVV-LQDCSLHVKPGVLGLLGPNGAGKSTLMRILATIEQPTNGSVMWN 61 Query: 62 GRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANRRIDELLELLN 121 G ++ P LR LGYLPQDFGVYPN+ AVEFL+Y+AA+KGL + + +RI+ELLE LN Sbjct: 62 GENIQKKPKLLRSQLGYLPQDFGVYPNMNAVEFLEYIAAMKGLAMNSSKKRINELLEALN 121 Query: 122 LNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLSQG 181 L RKR +G YSGGM+QR+GIAQALLNDPK+LIVDEPTVGLDPEER+RFRNLL+ LS Sbjct: 122 LTNDRKRLLGSYSGGMRQRVGIAQALLNDPKLLIVDEPTVGLDPEERIRFRNLLSTLSTD 181 Query: 182 RIILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQEARS 241 RII+ STHIV+DIE++A I +L+K +LA P QLLK EGKVW VIP ++L + Sbjct: 182 RIIILSTHIVTDIESSATNIALLSKGNVLAHMKPEQLLKRVEGKVWEEVIPASELHHVQK 241 Query: 242 KWLISGSVRIGEGVRVRMVAGEXXXXXXXXXXXXLEDAYLFLRSGLG 288 K+++SG+V +G+ R+++ LEDAYL+ S G Sbjct: 242 KYIVSGAVHRPDGIHARIISVHAPSKAARMIPASLEDAYLYYVSAKG 288 >Q1IMV2.1 Q1IMV2_ACIBL ABC transporter, ATPase subunit Length = 297 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 156/285 (54%), Positives = 198/285 (69%), Gaps = 4/285 (1%) Query: 2 LVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTWN 61 L +E V KRY ++D + PNGAGKSTLM ILATI+ P+ GRV W+ Sbjct: 3 LTVENVSKRYGNGVQALRDFSLELGPGVLGLLGPNGAGKSTLMSILATITLPSAGRVLWD 62 Query: 62 ----GRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANRRIDELL 117 D AAHP+ LR VLG+LPQDFGVYPNL+A+E+L+Y+AA+KG+DG A RI+ELL Sbjct: 63 DGKTSVDTAAHPNVLRNVLGFLPQDFGVYPNLSALEYLEYLAAIKGIDGKTAKSRIEELL 122 Query: 118 ELLNLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLAD 177 L+NL A+ RK+GGYSGGM+QR+GIAQALLNDPK+LIVDEPT GLDPEER+RFRNLL++ Sbjct: 123 TLVNLQSAKTRKLGGYSGGMRQRVGIAQALLNDPKLLIVDEPTAGLDPEERVRFRNLLSE 182 Query: 178 LSQGRIILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQ 237 LS RI++ STHIVSD+E TADRI ++A +L+ P QLL +G+VW V+P + L Sbjct: 183 LSHDRIVILSTHIVSDVELTADRIALVAAGQLITCQSPDQLLNSLDGRVWECVVPPDMLA 242 Query: 238 EARSKWLISGSVRIGEGVRVRMVAGEXXXXXXXXXXXXLEDAYLF 282 + +S SG VR +GV VR+V+ E LEDAYL Sbjct: 243 QFKSHHACSGMVRRQDGVHVRVVSDEKPWHNAESEPAVLEDAYLH 287 >C3AK70.1 C3AK70_BACMY ABC transporter MppX Length = 296 Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 154/287 (53%), Positives = 197/287 (68%), Gaps = 1/287 (0%) Query: 2 LVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTWN 61 L+I+ V K+Y + + D + PNGAGKSTLMR+LATI QPT G V W+ Sbjct: 3 LIIDHVTKKYGEKI-ALNDCSLHLKSGVLGLLGPNGAGKSTLMRMLATIEQPTNGSVIWD 61 Query: 62 GRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANRRIDELLELLN 121 G ++ P LR LGYLPQDFGVYPN+ AVEFL+Y+AA+KGL S + +RI+ELLE LN Sbjct: 62 GENIQKKPKLLRSELGYLPQDFGVYPNMNAVEFLEYIAAMKGLSMSSSKKRINELLEALN 121 Query: 122 LNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLSQG 181 L RKR +GGYSGGM+QR+GIAQALLNDPK+LIVDEPTVGLDPEER+RFRNLL+ LS Sbjct: 122 LMNDRKRLLGGYSGGMRQRVGIAQALLNDPKLLIVDEPTVGLDPEERIRFRNLLSSLSTD 181 Query: 182 RIILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQEARS 241 RI++ STHIV+DIE+ A I +L+K +LA P QLLK EGKVW VIP ++L + Sbjct: 182 RIVILSTHIVTDIESIATDIALLSKGNVLAHMRPEQLLKHVEGKVWEWVIPASELHHVQK 241 Query: 242 KWLISGSVRIGEGVRVRMVAGEXXXXXXXXXXXXLEDAYLFLRSGLG 288 K+++S ++ +G+ R+V+ LEDAYL+ S G Sbjct: 242 KYIVSSAIHRSDGIHARIVSSNAPSAKAHIIAASLEDAYLYYVSSKG 288 >C3B234.1 C3B234_BACMY ABC transporter MppX Length = 296 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 154/287 (53%), Positives = 197/287 (68%), Gaps = 1/287 (0%) Query: 2 LVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTWN 61 L+I+ V K+Y + + D + PNGAGKSTLMR+LATI QPT G V W+ Sbjct: 3 LIIDHVTKKYGEKI-ALNDCSLHLKPGVLGLLGPNGAGKSTLMRMLATIEQPTNGSVIWD 61 Query: 62 GRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANRRIDELLELLN 121 G ++ P LR LGYLPQDFGVYPN+ AVEFL+Y+AA+KGL S + +RI+ELLE LN Sbjct: 62 GENIQKKPKLLRSELGYLPQDFGVYPNMNAVEFLEYIAAMKGLSMSSSKKRINELLEALN 121 Query: 122 LNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLSQG 181 L RKR +GGYSGGM+QR+GIAQALLNDPK+LIVDEPTVGLDPEER+RFRNLL+ LS Sbjct: 122 LMNDRKRLLGGYSGGMRQRVGIAQALLNDPKLLIVDEPTVGLDPEERIRFRNLLSSLSTD 181 Query: 182 RIILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQEARS 241 RI++ STHIV+DIE+ A I +L+K +LA P QLLK EGKVW VIP ++L + Sbjct: 182 RIVILSTHIVTDIESIATDIALLSKGNVLAHMRPEQLLKHVEGKVWEWVIPASELHHVQK 241 Query: 242 KWLISGSVRIGEGVRVRMVAGEXXXXXXXXXXXXLEDAYLFLRSGLG 288 K+++S ++ +G+ R+V+ LEDAYL+ S G Sbjct: 242 KYIVSSAIHRSDGIHARIVSSNAPSAKAHIIAASLEDAYLYYVSSKG 288 >C1VC34.1 C1VC34_9EURY ABC-type multidrug transport system, ATPase component Length = 291 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 138/281 (49%), Positives = 191/281 (67%) Query: 2 LVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTWN 61 L I+ +GKRY ++ WG+++I+ PNGAGKS+LMR++ T+ +PT+G + WN Sbjct: 3 LSIQNLGKRYTEDVWGVRNIDLELDTGVHGLLGPNGAGKSSLMRMITTVMEPTKGSIRWN 62 Query: 62 GRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANRRIDELLELLN 121 G D+ P +R VLGYLPQDFGVYP+LT EFL+Y+ A++ +D RIDEL+ L N Sbjct: 63 GTDVLDSPGTIRSVLGYLPQDFGVYPDLTLEEFLEYVGALRSVDSKTVAARIDELIALTN 122 Query: 122 LNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLSQG 181 L AR RK+ +SGGM+QR GIAQALLNDP +L+VDEPTVGLDPEER+RFRN+++DLS Sbjct: 123 LEQARDRKLKTFSGGMRQRAGIAQALLNDPGLLVVDEPTVGLDPEERVRFRNIISDLSSD 182 Query: 182 RIILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPENQLQEARS 241 R+++ STHIV DIEATA+ I +L LL P L+K +GKV++ ++ L + RS Sbjct: 183 RVVILSTHIVPDIEATANTIALLDDGELLTHTDPESLIKTVKGKVYTYTTDQSNLDKIRS 242 Query: 242 KWLISGSVRIGEGVRVRMVAGEXXXXXXXXXXXXLEDAYLF 282 +ISG+V +G+ +R++A E LEDAYL+ Sbjct: 243 DQIISGTVSRSDGIELRVIAEEPPHENARVVPPTLEDAYLW 283 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,566,875,534 Number of extensions: 60289416 Number of successful extensions: 450726 Number of sequences better than 1.0e-05: 87370 Number of HSP's gapped: 350669 Number of HSP's successfully gapped: 92424 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)