BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0007.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5K2.1 B3K5K2_9BACI Putative uncharacterized protein 152 5e-35 Q2B3F5.1 Q2B3F5_9BACI Putative uncharacterized protein 119 5e-25 A6CLP3.1 A6CLP3_9BACI Putative uncharacterized protein 111 1e-22 C2W3C1.1 C2W3C1_BACCE Putative uncharacterized protein 99 7e-19 C3BF32.1 C3BF32_9BACI Putative uncharacterized protein 84 1e-14 >B3K5K2.1 B3K5K2_9BACI Putative uncharacterized protein Length = 321 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 95/322 (29%), Positives = 175/322 (54%), Gaps = 13/322 (4%) Query: 1 MKKWIITAVVLFVVGLIGVTATMWNEG-------GFSLGSVEVNQEQAVAADGVKDVVLS 53 MKK T ++ VG++ + TM GFS + ++N+EQ AD +D+ + Sbjct: 1 MKKR--TGYLIVAVGVLLLIFTMNPRNIFSDIQFGFSFDTKKINEEQTHDADIYRDLTVK 58 Query: 54 LNSINVTMVKGTANEIKASLAGRVSKKMVESTKLNLIREGDTVKIGVDSNR-WTVGFSVF 112 SI++ +V G ++IK L+G+ S K + KL + GD++ +GV+ + +G S+ Sbjct: 59 TGSIDIHVVPGATDQIKVRLSGKASSKYADQVKLKVEPNGDSMTVGVEEDHGINLGISIM 118 Query: 113 DVQVRVELPQQQYESFVFNSGTGDMNIAGVSARSVRVEADSGTVKLEGMKAGKISLELGS 172 D+Q+ VELP++ +E+ SG+G++ I + V V+A SG V ++ + AG++++ GS Sbjct: 119 DLQLTVELPEKNWETAKIESGSGNIEIESILGDEVTVKAGSGNVNVQQVNAGELAMHTGS 178 Query: 173 GDIEVNNVAADTLELNGDSTDVFLGKLAAQKVKLKTGGGNIRMKDVEAELELEADTGEVE 232 G+IEV + A+++ L S ++ A+++ + G GN+ + D EA L+ + +G + Sbjct: 179 GNIEVEEIEAESVALQSGSGEISADGYRAEQLSFQNGSGNVELSDGEAALQGKTGSGNIR 238 Query: 233 AEMTDITHPINITTGSGEVILNTAERPSSAAIRFSHGSGELHNQWEGTAQTTAHEGDDIV 292 + + H ++ TGSG V ++ A+ P+S + + SGE + + +G E + Sbjct: 239 VDAERLVHDADLRTGSGNVSIDLAQEPTSLEVDYQGSSGEGNIRLDGMRYEVKDEDKGRL 298 Query: 293 ---FGDGSVAVNVKTGSGDLTL 311 G G V + V+TGSG+ L Sbjct: 299 KGTLGSGDVLLKVRTGSGNFKL 320 >Q2B3F5.1 Q2B3F5_9BACI Putative uncharacterized protein Length = 317 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 91/317 (28%), Positives = 166/317 (52%), Gaps = 7/317 (2%) Query: 1 MKKWIITAVVLFVVGLIGVTATMWNEGGFSLGSVEVNQEQAVAADGVKDVVLSLNSINVT 60 MKK + VVLF++G+ G T+ GG + +VE+NQ + + AD ++ + ++ S +V Sbjct: 1 MKKMVAGLVVLFLIGVGGSAITLSASGGLNFNTVEINQSETIKADSIQHISVNSASTDVV 60 Query: 61 MVK-GTANEIKASLAGRVSKKMVESTKLNLIREGDTVKIGVD-SNRWTVGFSVF-DVQVR 117 + + G+ +IK +L G+VSKK+ + KL + + T+ + +D N + +G + DV++ Sbjct: 61 IREAGSEKDIKVALTGKVSKKLKDDYKLKVSEDDGTLNVDLDVKNMFRMGVVIIRDVKIE 120 Query: 118 VELPQQQYESFVFNSGTGDMNIAGVSARSVRVEADSGTVKLEGMKAG-KISLELGSGDIE 176 + LP+++YE +GD+ + ++ E SG V L+ M+AG ++ +++ SGD+ Sbjct: 121 MLLPKKEYEELAVQVLSGDIKAENIQSKDSIFETKSGDVALKRMEAGGQMEIQVASGDVR 180 Query: 177 VNNVAADTLELNGDSTDVFLGKLAAQKVKLKTGGGNIRMKDVEAELELEADTGEVEAEMT 236 V + A L+ S D+ + AA+ L T G+I++ ++ ++ + +G++ Sbjct: 181 VEDSKAKELKFKAASGDMQIDGSAAESADLYTASGDIKISELSGDIAAKITSGDLNISND 240 Query: 237 DITHPINITTGSGEVILNTAERPSSAAIRFSHGSGELHNQWEGTAQTTAHEGDDIV--FG 294 + I T SG+V ++ E PS + F SGE + Q + E D I+ G Sbjct: 241 QLAASITAETASGDVNISFKEEPSDMMVDFKATSGEGNVQLDRFLFEEKEE-DRILGKIG 299 Query: 295 DGSVAVNVKTGSGDLTL 311 G V V T SGD L Sbjct: 300 SGEHVVKVHTASGDFNL 316 >A6CLP3.1 A6CLP3_9BACI Putative uncharacterized protein Length = 292 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 140/282 (49%), Gaps = 5/282 (1%) Query: 35 EVNQEQAVAADGVKDVVLSLNSINVTMVKGTANEIKASLAGRVSKKMVESTKLNLIREGD 94 E+++ + + V ++ +S +S V + GTA+EI A L G +S K+ ++ + + ++G+ Sbjct: 10 EIHERKTIRGAEVDNINISTSSTEVEIFPGTADEITAELKGEISSKLKDNVDMTVTKQGE 69 Query: 95 TVKIGVDSNR---WTVGFSVFDVQVRVELPQQQYESFVFNSGTGDMNIAGVSARSVRVEA 151 ++ I V + + GF V D+++ VE+P++ YE + +G + + + V A Sbjct: 70 SLDIEVKVEQESGFRFGFDVIDLKLSVEVPEKLYEEISVETSSGSIMAKELEGKKVSFRA 129 Query: 152 DSGTVKLEGMKAG-KISLELGSGDIEVNNVAADTLELNGDSTDVFLGKLAAQKVKLKTGG 210 SG V+ +KA + + SG I++N + A + S + L KLAA+ + K Sbjct: 130 SSGEVEASRIKAHTEFKSKANSGGIQLNGIEAKEIHTKTSSGSMLLQKLAAEDIHAKASS 189 Query: 211 GNIRMKDVEAELELEADTGEVEAEMTDITHPINITTGSGEVILNTAERPSSAAIRFSHGS 270 G I +K L E+ +G V+ ++T I+ SG+V+L+ + P S I FS S Sbjct: 190 GRIIVKKWIGNLTAESSSGGVDLHAPEMTGNIDAEASSGDVMLHFDQGPDSFVIDFSGSS 249 Query: 271 GELHNQWEGT-AQTTAHEGDDIVFGDGSVAVNVKTGSGDLTL 311 GE H +G Q + GDG + VKT SGD Sbjct: 250 GEAHMDIKGVDYQEKSEHRISGKAGDGKYKIRVKTSSGDFDF 291 >C2W3C1.1 C2W3C1_BACCE Putative uncharacterized protein Length = 297 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 86/317 (27%), Positives = 151/317 (47%), Gaps = 27/317 (8%) Query: 1 MKKWIITAVVLFVVGLIGVTA-TMWNEGGFSLGSVEVNQEQAVAADGVKDVVLSLNSINV 59 MKK + A+ L V+G IGV A T++ G + E+++++ VA + + ++ + ++ +V Sbjct: 1 MKKLALIALSLLVIGSIGVGAMTVF---GVAFNKTEIHKKETVAVEKIDEIEIKTSAADV 57 Query: 60 TMVKGTANEIKASLAGRVSKKMVESTKLNLIREGDTVKIGVDSNRWTVGFSV---FDVQV 116 +V + +I+ L G +SK++V+ K + E + + + NR ++G + +V++ Sbjct: 58 EIVAVDSKDIEVLLDGDISKELVDKYKFEVKEESNRLNVKFSKNRDSIGLGIGTTAEVKL 117 Query: 117 RVELPQQQYESFVFNSGTGDMNIAGVSARSVRVEADSGTVKLEGMKA-GKISLELGSGDI 175 +V++PQ+ YE+ + +GD G+ ++ ++ SG V L K GK+++E SG I Sbjct: 118 QVKVPQKSYENVKVTTSSGDFVAKGIETKTAELKTSSGDVSLLHAKINGKLTVETSSGAI 177 Query: 176 EVNNVAADTLELNGDSTDVFLGKLAAQKVKLKTGGGNIRMKDVEAELELEADTGEVEAEM 235 E + + +L S + + L A+ V T G+I D E+ GEVE Sbjct: 178 ETDKSEVEIAKLETSSGKISVDSLRAKGVVFTTSSGDIEYND-------ESLQGEVEC-- 228 Query: 236 TDITHPINITTGSGEVILNTAERPSSAAIRFSHGSGELHNQWEGTAQTTAHEGDDI-VFG 294 T SG+V + P S + F SG+ G + I V G Sbjct: 229 ---------NTSSGDVRMKFNTPPKSLRVDFEGSSGKADLNINGLLYEEKTKRKLIGVKG 279 Query: 295 DGSVAVNVKTGSGDLTL 311 G V VKT SGD L Sbjct: 280 TGENKVKVKTSSGDFKL 296 >C3BF32.1 C3BF32_9BACI Putative uncharacterized protein Length = 297 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/317 (24%), Positives = 149/317 (47%), Gaps = 27/317 (8%) Query: 1 MKKWIITAVVLFVVGLIGVTA-TMWNEGGFSLGSVEVNQEQAVAADGVKDVVLSLNSINV 59 MKK ++ A+ L V+G IGV A T++ G + E+++++ VA + + ++ + ++ +V Sbjct: 1 MKKIVLIALSLLVIGGIGVGAMTVF---GVAFNKTEIHKKETVAVEKIDEIEIKTSAADV 57 Query: 60 TMVKGTANEIKASLAGRVSKKMVESTKLNLIREGDTVKIGVDSNRWTVGFSV---FDVQV 116 ++ + +I+ L G +SK++V+ K ++ +E + + I N+ VG+ + DV + Sbjct: 58 EIITVDSKDIEVLLDGEISKELVDEYKFDVKKENNRLNIKFSKNQNYVGWGIGTAADVNL 117 Query: 117 RVELPQQQYESFVFNSGTGDMNIAGVSARSVRVEADSGTVKLEGMKAG-KISLELGSGDI 175 +V++P++ Y++ + +GD + + + SG V L K K++ + SG I Sbjct: 118 QVKVPKKIYDTVKVTTSSGDFVAKEIETKVAEINTSSGDVSLSHSKVNEKLTAKTSSGKI 177 Query: 176 EVNNVAADTLELNGDSTDVFLGKLAAQKVKLKTGGGNIRMKDVEAELELEADTGEVEAEM 235 + + + +LN S + + L ++++ T G+I D + GEVE Sbjct: 178 KTDKSEIEVAKLNTRSGKIRVEGLHSKELAANTSSGDIEYND-------RSLRGEVEC-- 228 Query: 236 TDITHPINITTGSGEVILNTAERPSSAAIRFSHGSGELHNQWEGTAQTTAHEGDDI-VFG 294 T SG+V + P S + F SG+ G + + V G Sbjct: 229 ---------NTSSGDVKMQFDTFPESLRVEFDGSSGKADINVAGLLYEEKSKNQLVGVKG 279 Query: 295 DGSVAVNVKTGSGDLTL 311 G V VKT SGD L Sbjct: 280 TGENKVKVKTSSGDFKL 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.130 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,780,816,232 Number of extensions: 73236479 Number of successful extensions: 183413 Number of sequences better than 1.0e-05: 216 Number of HSP's gapped: 182917 Number of HSP's successfully gapped: 221 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)