BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0006.p (185 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0GCQ3.1 C0GCQ3_9FIRM Putative uncharacterized protein 88 3e-16 C0ZAI0.1 C0ZAI0_BREBN Putative uncharacterized protein 77 5e-13 A4IK36.1 A4IK36_GEOTN Putative uncharacterized protein 77 6e-13 B4BR75.1 B4BR75_9BACI Putative uncharacterized protein 77 6e-13 A9VPX7.1 A9VPX7_BACWK Putative uncharacterized protein 77 7e-13 >C0GCQ3.1 C0GCQ3_9FIRM Putative uncharacterized protein Length = 191 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%) Query: 1 MTQEQFLTQLRELMNPIPEPLRSEWIFDYEEHFRQAVEEGLREEQITEELGDPRQLAKEM 60 M + +F+T L + + I R E IFDYEEHFR + +G EE+I LGDPR +A++ Sbjct: 1 MNKHEFMTTLNKALAGIATQDRDEIIFDYEEHFRIGLSDGKTEEEIAASLGDPRAIARQF 60 Query: 61 VLAYRVNQAESSNGRLAPVSRVVFAMXXXXXXXXXXXXAPYIMLLAVLLVCWTSAAA--- 117 Y V+QAE ++ ++ + R V A P+I +LAVL + + +A Sbjct: 61 NADYHVHQAE-TDASVSNIFRAVLATLGLGFFNLVIVLGPFIAMLAVLFAFYVAGSAIIF 119 Query: 118 SGLVALTAIYEGVI-----GDAFTPVQGVFXXXXXXXXXXXXXXFSRWLTMAVSRMTLRY 172 SG+V G I P F + +LT T++Y Sbjct: 120 SGVVVFITTVAGPILPVTNASLVQPAAQFFASIGLICLGLLFIIGNVYLTKFFFIGTVKY 179 Query: 173 LKFNSKVMR 181 L+FN K+++ Sbjct: 180 LQFNLKIIK 188 >C0ZAI0.1 C0ZAI0_BREBN Putative uncharacterized protein Length = 183 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 12/189 (6%) Query: 1 MTQEQFLTQLRELMNPIPEPLRSEWIFDYEEHFRQAVEEGLREEQITEELGDPRQLAKEM 60 MT+ +F+ +L L++ +P+ R + + DY EHF + +G E +I E LG P+ +A+E+ Sbjct: 1 MTRREFMDELNALLSALPDKERLDILADYTEHFLSGMNQGKTEHEIAEGLGSPKLVAREL 60 Query: 61 VLAYRVNQAESSNGRLAPVSRVVFAMXXXXXXXXXXXXAPYIMLLAVLLVCWTSAAASGL 120 + YR++QA+S+ + ++R + A P++ L+ +L+ + AA L Sbjct: 61 LAGYRIDQAQST-ASVGNMTRAIVATISLGFFNLVFVLGPFLGLIGILMGLYAMTAAL-L 118 Query: 121 VALTAIY--EGVIGDA----FTPVQGVFXXXXXXXXXXXXXXFSRWLTMAVSRMTLRYLK 174 VA I+ G+ + F + ++WL R LRYL+ Sbjct: 119 VAPVGIFLDYGIPAPSQERLFLLFSSMVSVGLGGMLAIGLLRLTKWLY----RQFLRYLQ 174 Query: 175 FNSKVMRVK 183 FN K++R K Sbjct: 175 FNVKMIRGK 183 >A4IK36.1 A4IK36_GEOTN Putative uncharacterized protein Length = 186 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 11/189 (5%) Query: 1 MTQEQFLTQLRELMNPIPEPLRSEWIFDYEEHFRQAVEEGLREEQITEELGDPRQLAKEM 60 M ++QFLT L + +P R E I D+EEHF + G EE+I++ LG P+Q+AKE+ Sbjct: 1 MNKQQFLTALETELKKLPHEEREEIIQDFEEHFYIGMANGKSEEEISQSLGSPKQIAKEI 60 Query: 61 VLAYRVNQAESSNGRLAPVSRVVFAMXXXXXXXXXXXXAPYIMLLAVLLVCW---TSAAA 117 R+ + E+S + V R V+A+ P++ LLAV+ V W + A Sbjct: 61 AAVSRIEKIEAS-ATVGNVLRAVWAVIGLGFFNFVTVFGPFLALLAVVFVGWFIGVAFIA 119 Query: 118 SGLVAL-TAIYEGVIGDAFTPVQGVFXXXXXXXXXXXXXXFSRWLTMAVSRMTLRYLKFN 176 S L+ L +AI + D F+ +F ++T ++ + +RYL++N Sbjct: 120 SPLILLVSAINHPGMFDLFS----LFFSIMLCGSGWFIVRGMLYVTKVLTDLLVRYLRYN 175 Query: 177 SKVMRVKGS 185 V VKG Sbjct: 176 --VSLVKGG 182 >B4BR75.1 B4BR75_9BACI Putative uncharacterized protein Length = 186 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 11/189 (5%) Query: 1 MTQEQFLTQLRELMNPIPEPLRSEWIFDYEEHFRQAVEEGLREEQITEELGDPRQLAKEM 60 M ++QFLT L + +P R E I D+EEHF + G EE+I++ LG P+Q+AKE+ Sbjct: 1 MNKQQFLTALETELKKLPHEEREEIIQDFEEHFYIGMANGKSEEEISQSLGSPKQIAKEI 60 Query: 61 VLAYRVNQAESSNGRLAPVSRVVFAMXXXXXXXXXXXXAPYIMLLAVLLVCW---TSAAA 117 R+ + E+S + V R V+A+ P++ LLAV+ V W + A Sbjct: 61 AAVSRIEKIEAS-ATVGNVLRAVWAVIGLGFFNFVTVFGPFLALLAVVFVGWFIGVAFIA 119 Query: 118 SGLVAL-TAIYEGVIGDAFTPVQGVFXXXXXXXXXXXXXXFSRWLTMAVSRMTLRYLKFN 176 S L+ L +AI + D F+ +F ++T ++ + +RYL++N Sbjct: 120 SPLILLVSAINHPGMFDLFS----LFFSIMLCGSGWFIVRGMLYVTKVLTDLLVRYLRYN 175 Query: 177 SKVMRVKGS 185 V VKG Sbjct: 176 --VSLVKGG 182 >A9VPX7.1 A9VPX7_BACWK Putative uncharacterized protein Length = 180 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 13/186 (6%) Query: 1 MTQEQFLTQLRELMNPIPEPLRSEWIFDYEEHFRQAVEEGLREEQITEELGDPRQLAKEM 60 M++EQFL +L + +PE R + +FDYEEHF+ VEEG E +I + LG P+ +AK++ Sbjct: 1 MSKEQFLKELSSHLRKLPEEERQDILFDYEEHFQFGVEEGKTESEIIKGLGSPKVIAKDL 60 Query: 61 VLAYRVNQAESSNGRLAPVSRVVFAMXXXXXXXXXXXXAPYIMLLAVLLVCWTSAAASGL 120 + YR ++ + + + V+R V A P + ++A + W AS + Sbjct: 61 LAMYRFDEMK-KDPSTSNVTRAVMAAVGLSLFNFIIVLGPLVAIIAFIFSFWVGGIASVV 119 Query: 121 VALTAIYEGVIG-----DAFTPVQGVFXXXXXXXXXXXXXXFSRWLTMAVSRMTLRYLKF 175 I + +G D F + V ++W R+ +RY+ + Sbjct: 120 TPFFVIVKVFMGTFIWLDLFVSITFVGVGLLLCIVAYYS---TKWF----KRLCVRYVVW 172 Query: 176 NSKVMR 181 N K+++ Sbjct: 173 NFKMIK 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 837,450,815 Number of extensions: 25832678 Number of successful extensions: 68776 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 68785 Number of HSP's successfully gapped: 141 Length of query: 185 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 58 Effective length of database: 1,864,227,298 Effective search space: 108125183284 Effective search space used: 108125183284 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)