BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0556.0005.p
         (106 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0ZAH9.1 C0ZAH9_BREBN Putative uncharacterized protein                148   2e-34
C2YJ51.1 C2YJ51_BACCE Transcriptional regulator                       140   3e-32
Q733D0.1 Q733D0_BACC1 Putative uncharacterized protein                138   2e-31
B7HKQ8.1 B7HKQ8_BACC7 Putative uncharacterized protein                138   2e-31
C3C5W7.1 C3C5W7_BACTU Transcriptional regulator                       138   2e-31

>C0ZAH9.1 C0ZAH9_BREBN Putative uncharacterized protein
          Length = 109

 Score =  148 bits (373), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 87/104 (83%)

Query: 1   MNIQFKKGVLDLCVLALTAREDRYGYELAVAISSKFEVAVGSVYPLLNRLTLEGYFSTYL 60
           MN+QFKKGVL+LCVL LTA++DRYGYEL  +IS KF ++ G+VYPLL RLT EG+F+TYL
Sbjct: 1   MNVQFKKGVLELCVLVLTAKQDRYGYELVASISEKFHISEGTVYPLLRRLTQEGFFTTYL 60

Query: 61  RESREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLIKEGV 104
            ES+EGPPRKYY+LT  G+ ++ +LILEWR F   V+++I+EG+
Sbjct: 61  AESQEGPPRKYYQLTNRGRQYMNDLILEWRIFNRGVNEIIEEGL 104


>C2YJ51.1 C2YJ51_BACCE Transcriptional regulator
          Length = 107

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 80/105 (76%), Gaps = 1/105 (0%)

Query: 1   MNIQFKKGVLDLCVLALTAREDRYGYELAVAISSKFEVAVGSVYPLLNRLTLEGYFSTYL 60
           MN+QFKKGVL+LCVLAL  R+D YGYEL   IS+KF ++ GSVYPLL RLT EGYF TYL
Sbjct: 1   MNVQFKKGVLELCVLALVKRKDSYGYELVQQISNKFLISEGSVYPLLRRLTKEGYFQTYL 60

Query: 61  RESREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLIKEGVE 105
           +ES EGPPRKYY+LT  G+ H   L+ EWR F   V ++I EGVE
Sbjct: 61  KESTEGPPRKYYQLTEQGETHFHLLVTEWRDFAKGVQEII-EGVE 104


>Q733D0.1 Q733D0_BACC1 Putative uncharacterized protein
          Length = 107

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 80/105 (76%), Gaps = 1/105 (0%)

Query: 1   MNIQFKKGVLDLCVLALTAREDRYGYELAVAISSKFEVAVGSVYPLLNRLTLEGYFSTYL 60
           MN+QFKKGVL+LCVLAL  R+D YGYEL   IS+KF ++ GSVYPLL RLT EGYF TYL
Sbjct: 1   MNVQFKKGVLELCVLALVKRKDCYGYELVQQISNKFLISEGSVYPLLRRLTKEGYFQTYL 60

Query: 61  RESREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLIKEGVE 105
           +ES EGPPRKYY+LT  G+  L  L+ EWR F   V ++I EGVE
Sbjct: 61  KESTEGPPRKYYQLTEQGETQLNVLVTEWRDFAKGVQEII-EGVE 104


>B7HKQ8.1 B7HKQ8_BACC7 Putative uncharacterized protein
          Length = 107

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 80/105 (76%), Gaps = 1/105 (0%)

Query: 1   MNIQFKKGVLDLCVLALTAREDRYGYELAVAISSKFEVAVGSVYPLLNRLTLEGYFSTYL 60
           MN+QFKKGVL+LCVLAL  R+D YGYEL   IS+KF ++ GSVYPLL RLT EGYF TYL
Sbjct: 1   MNVQFKKGVLELCVLALVKRKDCYGYELVQQISNKFLISEGSVYPLLRRLTKEGYFQTYL 60

Query: 61  RESREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLIKEGVE 105
           +ES EGPPRKYY+LT  G+  L  L+ EWR F   V ++I EGVE
Sbjct: 61  KESTEGPPRKYYQLTEQGETQLNLLVTEWRDFAKGVQEII-EGVE 104


>C3C5W7.1 C3C5W7_BACTU Transcriptional regulator
          Length = 107

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 80/105 (76%), Gaps = 1/105 (0%)

Query: 1   MNIQFKKGVLDLCVLALTAREDRYGYELAVAISSKFEVAVGSVYPLLNRLTLEGYFSTYL 60
           MN+QFKKGVL+LCVLAL  R+D YGYEL   IS+KF ++ GSVYPLL RLT EGYF TYL
Sbjct: 1   MNVQFKKGVLELCVLALVKRKDCYGYELVQQISNKFLISEGSVYPLLRRLTKEGYFQTYL 60

Query: 61  RESREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLIKEGVE 105
           +ES EGPPRKYY+LT  G+  L  L+ EWR F   V ++I EGVE
Sbjct: 61  KESTEGPPRKYYQLTEQGETQLNLLVTEWRDFAKGVQEII-EGVE 104


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 608,406,791
Number of extensions: 21183041
Number of successful extensions: 45158
Number of sequences better than 1.0e-05: 1007
Number of HSP's gapped: 44658
Number of HSP's successfully gapped: 1007
Length of query: 106
Length of database: 3,060,696,203
Length adjustment: 74
Effective length of query: 32
Effective length of database: 2,363,541,093
Effective search space: 75633314976
Effective search space used: 75633314976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)