BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0004.p (511 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4KYK6.1 C4KYK6_EXISA Methyl-accepting chemotaxis sensory transd... 102 9e-20 B1YFV6.1 B1YFV6_EXIS2 Methyl-accepting chemotaxis sensory transd... 100 4e-19 B1I000.1 B1I000_LYSSC Methyl-accepting chemotaxis protein 96 7e-18 A3I7W9.1 A3I7W9_9BACI TlpA 92 1e-16 Q65NE7.1 Q65NE7_BACLD TlpA 91 3e-16 >C4KYK6.1 C4KYK6_EXISA Methyl-accepting chemotaxis sensory transducer Length = 569 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 138/278 (49%), Gaps = 14/278 (5%) Query: 9 MRHLKVRHKMLLLVTVFIIMLIGTGAVGIITTKQMATGSGKSYSQNLQPMYLITEIRGNN 68 M++L + K +L+++F++ L+ + + +MA K Y + L P+ I ++R +N Sbjct: 1 MKNLSMSKKFTVLISLFVVTLVMISMLSHMLIGRMADAGEKIYEERLIPIRAIGQLRTDN 60 Query: 69 RAIESLLLESLITKNDGKSQEHTAAIGEYININNELITQLK----AISFSNKDVSNKINE 124 RAIES LLE ++T +++E I E + T LK +IS N ++ ++I + Sbjct: 61 RAIESHLLELMLTTESARNEELQKNIEER---RESMATDLKVFNDSISTENPELISRIEK 117 Query: 125 YLSLLPDYRAQRDSIVQLAGKKLKNEGYQIFSGSVFSKSREIMVSLLEDTAKLLVQ---D 181 Y D ++Q A + Y+ + ++ R I ++L+E +++ Q D Sbjct: 118 LNEETNAYLESIDVVLQPALRNENESAYRQYG----TELRPIRLALVETAKEVMDQLNAD 173 Query: 182 ARNNNETNQQDAQRXXXXXXXXXXXXXXXXXXXXXXXXRMITKPLKELQVLMKDAESGNL 241 A ++T + D +R R++ P+KEL VLM A G+L Sbjct: 174 AETASDTMRSDRERAVLIFWGLVILGATLSIGLGVYITRLVVGPVKELNVLMSRAGEGDL 233 Query: 242 TASAAYSSRDETGQLHRSFNAMIQSLKTMMQGVSESTG 279 T ++ Y+SRDE G L +SFN M +SL+ ++ GV+ + G Sbjct: 234 TVNSTYTSRDEIGALAQSFNQMKESLRELIGGVTSTAG 271 >B1YFV6.1 B1YFV6_EXIS2 Methyl-accepting chemotaxis sensory transducer Length = 568 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 1/259 (0%) Query: 9 MRHLKVRHKMLLLVTVFIIMLIGTGAVGIITTKQMATGSGKSYSQNLQPMYLITEIRGNN 68 M++L VR K+ LL+ I+ +I + G+ QM+ S Y +NL P+ + +IR + Sbjct: 1 MKNLSVRKKIQLLIATAIVAMILLASAGLYFLNQMSNASQAMYKENLIPVQEVAQIRIDT 60 Query: 69 RAIESLLLESLITKNDGKSQEHTAAIGEYININNELITQLKAISFSNKDVSNKINEYLSL 128 RA++S L+E ++TK+ + +E A I + + + + S K ++ Sbjct: 61 RALDSFLVEMMLTKDPARIEELGAQIDQRQAQIRSSLNKFERTSVPTKQSEKQVENLKDS 120 Query: 129 LPDYRAQRDSIVQLAGKKLKNEGYQIFSGSVFSKSREIMVSLLEDTAKLLVQDARNNNET 188 + Y +I L + K +GY+ +S S K+R+ + + + + + +++ N Sbjct: 121 VLAYDNGLSTIQDLVTQGDKEQGYRFYSES-LEKTRDEVANTAKSLMMSMTKQSKDINAL 179 Query: 189 NQQDAQRXXXXXXXXXXXXXXXXXXXXXXXXRMITKPLKELQVLMKDAESGNLTASAAYS 248 NQQ+ Q R+ITKP++ LQ MK + G+LT Y Sbjct: 180 NQQEKQTAFYIMLGIFLLALLLFAGLALYITRLITKPIRSLQGWMKQSGEGDLTVRGDYV 239 Query: 249 SRDETGQLHRSFNAMIQSL 267 S+DE GQL SFN M + L Sbjct: 240 SKDELGQLTTSFNTMTEQL 258 >B1I000.1 B1I000_LYSSC Methyl-accepting chemotaxis protein Length = 556 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 136/269 (50%), Gaps = 16/269 (5%) Query: 9 MRHLKVRHKMLLLVTVFIIMLIGTGAVGIITTKQMATGSGKSYSQNLQPMYLITEIRGNN 68 R +KV+ K+L+L+ V ++ + G + ++M+ + +SY Q L P+ + E+ + Sbjct: 4 FRFIKVKDKLLVLMIVCVLSNVLLGVFSVDYLRKMSWHASESYKQGLVPIGWLNELEESQ 63 Query: 69 RAIESLLLESLITKNDGKSQEHTAAIGEYININNELITQLKAISFSNKDVSNKINEYLSL 128 R ++ I +DG + +A + + ++ + LK +K +S++IN+Y SL Sbjct: 64 RQLD------FIVDSDGDYKRMSAILKDV----DKPLDHLKGQEI-DKKMSHQINKYKSL 112 Query: 129 LPDYRAQRDSIVQLAGKKLKNEGYQIFSGSVFSKSREIMVSLLEDTAKLLVQDARNNNET 188 L R + + QL ++E + +S + S+EI +LLE+T LVQ A++ ++ Sbjct: 113 LGKQREKIEGYQQLK----QSEQEKFYSQTFLPISQEIH-TLLEETQNYLVQRAKDQQQS 167 Query: 189 NQQDAQRXXXXXXXXXXXXXXXXXXXXXXXXRMITKPLKELQVLMKDAESGNLTASAAYS 248 Q+D Q + + P ++L+ L+K AE GN TA+A+Y Sbjct: 168 YQEDVQFGYWLLGGVCLTVVMLVIIIGFIATKAVNVPTRQLKSLLKQAEQGNFTANASYV 227 Query: 249 SRDETGQLHRSFNAMIQSLKTMMQGVSES 277 + DE G++ S+N M+ +K ++ V++S Sbjct: 228 AHDELGEVVLSYNQMVTEVKRLLHTVTDS 256 >A3I7W9.1 A3I7W9_9BACI TlpA Length = 563 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 136/269 (50%), Gaps = 16/269 (5%) Query: 9 MRHLKVRHKMLLLVTVFIIMLIGTGAVGIITTKQMATGSGKSYSQNLQPMYLITEIRGNN 68 R +KV+ K+L+L+ V ++ + G + ++M+ + +SY Q L P+ + E+ + Sbjct: 11 FRFIKVKDKLLVLMIVCVLSNVLLGVFSVDYLRKMSWHASESYKQGLVPIGWLNELEESQ 70 Query: 69 RAIESLLLESLITKNDGKSQEHTAAIGEYININNELITQLKAISFSNKDVSNKINEYLSL 128 R ++ I +DG ++ + + ++ + LK+ +K +S++IN+Y SL Sbjct: 71 RQLD------FIVDSDGNYTGMSSILKDV----DKPLDHLKSQEI-DKKMSHQINKYKSL 119 Query: 129 LPDYRAQRDSIVQLAGKKLKNEGYQIFSGSVFSKSREIMVSLLEDTAKLLVQDARNNNET 188 L R + QL ++E + +S + S+EI +LLE+T LVQ A++ ++ Sbjct: 120 LGKQRELIEGYQQLT----QSEQEKFYSQTFLPISQEIH-TLLEETQNYLVQRAKDQQQS 174 Query: 189 NQQDAQRXXXXXXXXXXXXXXXXXXXXXXXXRMITKPLKELQVLMKDAESGNLTASAAYS 248 Q+D Q + + P ++L+ L+K AE G+ TA+A+Y Sbjct: 175 YQEDVQFGYWLLGGVCLTVVMLVIIIGFIATKAVNVPTRQLKSLLKQAEQGDFTANASYV 234 Query: 249 SRDETGQLHRSFNAMIQSLKTMMQGVSES 277 + DE G++ S+N M+ +K+++ V++S Sbjct: 235 AHDELGEVVLSYNQMVTEVKSLLHTVTDS 263 >Q65NE7.1 Q65NE7_BACLD TlpA Length = 572 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 130/274 (47%), Gaps = 10/274 (3%) Query: 9 MRHLKVRHKMLLLVTVFIIMLIGTGAVGIITTKQMATGSGKSYSQNLQPMYLITEIRGNN 68 +R++K+R K+ +++ + + L G G+ +++ GS Y L P L ++ NN Sbjct: 4 LRNIKIRSKLFVIIIISALALSIVGIQGVGGLSKLSKGSEMIYQDQLIPNQLFARLKANN 63 Query: 69 RAIESLLLESLITKNDGKSQEHTAAIGEYININNELITQLKAISFSNKDVSNKINEYLSL 128 +++ E ++TK+ +++ I E NN L+ ++ + + +VS K Y S Sbjct: 64 LDLDTYKFELMVTKDSDRNETLQKNIKEKNEENNTLMEKIDQLKLMD-NVSEK---YESF 119 Query: 129 LPDYRAQRDSIVQLAGKKLKNEGYQIFSGSVFSKS----REIMVSLLEDTAKLLVQDARN 184 +Y+ +D Q+ +KNE + + V+ K RE + L+ED L +A+ Sbjct: 120 KSEYKKLQDISSQMLSLAVKNENDKAYD--VYLKEMEPQRETVNQLIEDIQTLNADNAKT 177 Query: 185 NNETNQQDAQRXXXXXXXXXXXXXXXXXXXXXXXXRMITKPLKELQVLMKDAESGNLTAS 244 + + ++A R+ITKP+K++Q L + E G+ T Sbjct: 178 IYQRDSKEAGSIITLLIIVIAASLVLSISIGLLMTRLITKPIKDIQALFAETEQGDFTVK 237 Query: 245 AAYSSRDETGQLHRSFNAMIQSLKTMMQGVSEST 278 Y S+DE G L SFN M+ ++++++ V E++ Sbjct: 238 GTYQSKDELGLLTASFNKMVAGVRSIIETVGETS 271 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.126 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,917,332,893 Number of extensions: 59784278 Number of successful extensions: 203520 Number of sequences better than 1.0e-05: 405 Number of HSP's gapped: 204267 Number of HSP's successfully gapped: 451 Length of query: 511 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 371 Effective length of database: 1,741,754,103 Effective search space: 646190772213 Effective search space used: 646190772213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)